#include <ProtocolS1.h>

Inheritance diagram for Nektar::ProtocolS1:

Collaboration diagram for Nektar::ProtocolS1:

Public Member Functions
	ProtocolS1 (const LibUtilities::SessionReaderSharedPtr &pSession, const TiXmlElement *pXml)
virtual	~ProtocolS1 ()
void	Initialise ()
	Initialise the protocol storage and set initial conditions.
Public Member Functions inherited from Nektar::Protocol
	Protocol (const LibUtilities::SessionReaderSharedPtr &pSession, const TiXmlElement *pXml)
virtual	~Protocol ()
NekDouble	GetAmplitude (const NekDouble time)
	Returns amplitude of stimulus (1 or 0) at given time.
void	GenerateSummary (SolverUtils::SummaryList &s)
	Print a summary of the cell model.

Static Public Member Functions
static ProtocolSharedPtr	create (const LibUtilities::SessionReaderSharedPtr &pSession, const TiXmlElement *pXml)
	Creates an instance of this class.

Static Public Attributes
static std::string	className
	Name of class.

Protected Member Functions
virtual NekDouble	v_GetAmplitude (const NekDouble time)
virtual void	v_GenerateSummary (SolverUtils::SummaryList &s)
virtual void	v_SetInitialConditions ()

Protected Attributes
NekDouble	m_start
NekDouble	m_dur
NekDouble	m_num_s1
NekDouble	m_s1cyclelength
NekDouble	time1
Protected Attributes inherited from Nektar::Protocol
LibUtilities::SessionReaderSharedPtr	m_session
	Session.

Detailed Description

Protocol base class.

The Stimuli class and derived classes implement a range of stimuli. The stimulus contains input stimuli that can be applied throughout the domain, on specified regions determined by the derived classes of Stimulus, at specified frequencies determined by the derived classes of Protocol.

Definition at line 47 of file ProtocolS1.h.

Constructor & Destructor Documentation

Nektar::ProtocolS1::ProtocolS1	(	const LibUtilities::SessionReaderSharedPtr &	pSession,
		const TiXmlElement *	pXml
	)

Protocol base class constructor.

Definition at line 60 of file ProtocolS1.cpp.

References m_dur, m_num_s1, m_s1cyclelength, Nektar::Protocol::m_session, and m_start.

            : Protocol(pSession, pXml)
    {
        m_session = pSession;
        
        if (!pXml)
        {
            return;
        }
        
        // Declare temporary XML element pointer
        const TiXmlElement *pXmlparameter; 
        
        // Read each variable, extract text and convert to floating-point
        pXmlparameter = pXml->FirstChildElement("START");
        m_start = atof(pXmlparameter->GetText());
        
        pXmlparameter = pXml->FirstChildElement("DURATION");
        m_dur = atof(pXmlparameter->GetText());
        
        pXmlparameter = pXml->FirstChildElement("S1CYCLELENGTH");
        m_s1cyclelength = atof(pXmlparameter->GetText());
        pXmlparameter = pXml->FirstChildElement("NUM_S1");
        m_num_s1 = atof(pXmlparameter->GetText());
    }

virtual Nektar::ProtocolS1::~ProtocolS1 ( )

inlinevirtual

Definition at line 65 of file ProtocolS1.h.

{}

Member Function Documentation

static ProtocolSharedPtr Nektar::ProtocolS1::create	(	const LibUtilities::SessionReaderSharedPtr &	pSession,
		const TiXmlElement *	pXml
	)

inlinestatic

Creates an instance of this class.

Definition at line 51 of file ProtocolS1.h.

        {
            return MemoryManager<ProtocolS1>
            ::AllocateSharedPtr(pSession, pXml);
        }

void Nektar::ProtocolS1::Initialise ( )

Initialise the protocol storage and set initial conditions.

Initialise the protocol. Allocate workspace and variable storage.

Reimplemented from Nektar::Protocol.

Definition at line 93 of file ProtocolS1.cpp.

    {
        
    }

void Nektar::ProtocolS1::v_GenerateSummary ( SolverUtils::SummaryList & s )

protectedvirtual

Implements Nektar::Protocol.

Definition at line 121 of file ProtocolS1.cpp.

    {
        
    }

NekDouble Nektar::ProtocolS1::v_GetAmplitude ( const NekDouble time )

protectedvirtual

Implements Nektar::Protocol.

Definition at line 102 of file ProtocolS1.cpp.

References m_dur, m_num_s1, m_s1cyclelength, m_start, and time1.

    {
        time1 = time - floor((time-m_start)/m_s1cyclelength)*m_s1cyclelength 
                     - m_start;
        if( (time1 > 0) && 
            (m_s1cyclelength * (m_num_s1) + m_start) && 
            (time1  < m_dur) )
        {
            return 1.0;
        }
        return 0.0;
    }

void Nektar::ProtocolS1::v_SetInitialConditions ( )

protectedvirtual

Definition at line 130 of file ProtocolS1.cpp.

    {
        
    }

Member Data Documentation

std::string Nektar::ProtocolS1::className

static

Initial value:

 GetProtocolFactory().RegisterCreatorFunction(
                                                   "ProtocolS1",
                                                   ProtocolS1::create,
                                                   "S1 stimulus protocol.")

Name of class.

Definition at line 60 of file ProtocolS1.h.

NekDouble Nektar::ProtocolS1::m_dur

protected

Definition at line 72 of file ProtocolS1.h.

Referenced by ProtocolS1(), and v_GetAmplitude().

NekDouble Nektar::ProtocolS1::m_num_s1

protected

Definition at line 73 of file ProtocolS1.h.

Referenced by ProtocolS1(), and v_GetAmplitude().

NekDouble Nektar::ProtocolS1::m_s1cyclelength

protected