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Nektar::Bidomain Member List

This is the complete list of members for Nektar::Bidomain, including all inherited members.

AdvectionNonConservativeForm(const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wk=NullNekDouble1DArray)Nektar::SolverUtils::EquationSystem
as()Nektar::SolverUtils::EquationSysteminline
Bidomain(const LibUtilities::SessionReaderSharedPtr &pSession)Nektar::Bidomainprotected
CheckForRestartTime(NekDouble &time)Nektar::SolverUtils::UnsteadySystemprotected
Checkpoint_BaseFlow(const int n)Nektar::SolverUtils::EquationSystem
Checkpoint_Output(const int n)Nektar::SolverUtils::EquationSystem
Checkpoint_Output(const int n, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)Nektar::SolverUtils::EquationSystem
classNameNektar::Bidomainstatic
CopyFromPhysField(const int i, Array< OneD, NekDouble > &output)Nektar::SolverUtils::EquationSysteminline
CopyToPhysField(const int i, Array< OneD, NekDouble > &output)Nektar::SolverUtils::EquationSysteminline
create(const LibUtilities::SessionReaderSharedPtr &pSession)Nektar::Bidomaininlinestatic
DescribeFunction(std::string pFieldName, const std::string &pFunctionName, const int domain)Nektar::SolverUtils::EquationSystem
DoImplicitSolve(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, NekDouble time, NekDouble lambda)Nektar::Bidomainprotected
DoInitialise()Nektar::SolverUtils::EquationSysteminline
DoOdeRhs(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)Nektar::Bidomainprotected
DoSolve()Nektar::SolverUtils::EquationSysteminline
eHomogeneous1D enum valueNektar::SolverUtils::EquationSystemprotected
eHomogeneous2D enum valueNektar::SolverUtils::EquationSystemprotected
eHomogeneous3D enum valueNektar::SolverUtils::EquationSystemprotected
eNotHomogeneous enum valueNektar::SolverUtils::EquationSystemprotected
EquationSystem(const LibUtilities::SessionReaderSharedPtr &pSession)Nektar::SolverUtils::EquationSystemprotected
ErrorExtraPoints(unsigned int field)Nektar::SolverUtils::EquationSystem
EvaluateExactSolution(int field, Array< OneD, NekDouble > &outfield, const NekDouble time)Nektar::SolverUtils::EquationSysteminline
EvaluateFunction(Array< OneD, Array< OneD, NekDouble > > &pArray, std::string pFunctionName, const NekDouble pTime=0.0, const int domain=0)Nektar::SolverUtils::EquationSystem
EvaluateFunction(std::vector< std::string > pFieldNames, Array< OneD, Array< OneD, NekDouble > > &pFields, const std::string &pName, const NekDouble &pTime=0.0, const int domain=0)Nektar::SolverUtils::EquationSystem
EvaluateFunction(std::vector< std::string > pFieldNames, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const std::string &pName, const NekDouble &pTime=0.0, const int domain=0)Nektar::SolverUtils::EquationSystem
EvaluateFunction(std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)Nektar::SolverUtils::EquationSystem
FwdTransFields()Nektar::SolverUtils::EquationSystem
GetCheckpointNumber()Nektar::SolverUtils::EquationSysteminline
GetCheckpointSteps()Nektar::SolverUtils::EquationSysteminline
GetCoeff_Offset(int n)Nektar::SolverUtils::EquationSysteminline
GetExpSize()Nektar::SolverUtils::EquationSysteminline
GetFinalTime()Nektar::SolverUtils::EquationSysteminline
GetFluxVector(const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)Nektar::SolverUtils::EquationSysteminline
GetFluxVector(const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &fluxX, Array< OneD, Array< OneD, NekDouble > > &fluxY)Nektar::SolverUtils::EquationSysteminline
GetFluxVector(const int i, const int j, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)Nektar::SolverUtils::EquationSysteminline
GetNcoeffs()Nektar::SolverUtils::EquationSysteminline
GetNcoeffs(const int eid)Nektar::SolverUtils::EquationSysteminline
GetNpoints()Nektar::SolverUtils::EquationSysteminline
GetNumElmVelocity()Nektar::SolverUtils::EquationSysteminline
GetNumExpModes()Nektar::SolverUtils::EquationSysteminline
GetNumExpModesPerExp()Nektar::SolverUtils::EquationSysteminline
GetNvariables()Nektar::SolverUtils::EquationSysteminline
GetPhys_Offset(int n)Nektar::SolverUtils::EquationSysteminline
GetPressure()Nektar::SolverUtils::EquationSysteminline
GetSession()Nektar::SolverUtils::EquationSysteminline
GetSessionName()Nektar::SolverUtils::EquationSysteminline
GetSteps()Nektar::SolverUtils::EquationSysteminline
GetTimeStep(const Array< OneD, const Array< OneD, NekDouble > > &inarray)Nektar::SolverUtils::UnsteadySystem
Nektar::SolverUtils::EquationSystem::GetTimeStep()Nektar::SolverUtils::EquationSysteminline
GetTotPoints()Nektar::SolverUtils::EquationSysteminline
GetTotPoints(int n)Nektar::SolverUtils::EquationSysteminline
GetTraceNpoints()Nektar::SolverUtils::EquationSysteminline
GetTraceTotPoints()Nektar::SolverUtils::EquationSysteminline
GetVariable(unsigned int i)Nektar::SolverUtils::EquationSysteminline
HomogeneousType enum nameNektar::SolverUtils::EquationSystemprotected
ImportFld(const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)Nektar::SolverUtils::EquationSystem
ImportFld(const std::string &infile, std::vector< std::string > &fieldStr, Array< OneD, Array< OneD, NekDouble > > &coeffs)Nektar::SolverUtils::EquationSystem
ImportFld(const std::string &infile, MultiRegions::ExpListSharedPtr &pField, std::string &pFieldName)Nektar::SolverUtils::EquationSystem
ImportFldBase(std::string pInfile, SpatialDomains::MeshGraphSharedPtr pGraph)Nektar::SolverUtils::EquationSystemprotected
ImportFldToMultiDomains(const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const int ndomains)Nektar::SolverUtils::EquationSystem
InitialiseBaseFlow(Array< OneD, Array< OneD, NekDouble > > &base)Nektar::SolverUtils::EquationSystem
InitObject()Nektar::SolverUtils::EquationSysteminline
L2Error(unsigned int field, const Array< OneD, NekDouble > &exactsoln, bool Normalised=false)Nektar::SolverUtils::EquationSysteminline
L2Error(unsigned int field, bool Normalised=false)Nektar::SolverUtils::EquationSysteminline
LinfError(unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)Nektar::SolverUtils::EquationSysteminline
m_baseNektar::SolverUtils::EquationSystemprotected
m_boundaryConditionsNektar::SolverUtils::EquationSystemprotected
m_capMembraneNektar::Bidomainprivate
m_cellNektar::Bidomainprivate
m_cflSafetyFactorNektar::SolverUtils::UnsteadySystem
m_checkIfSystemSingularNektar::SolverUtils::EquationSystemprotected
m_checkstepsNektar::SolverUtils::EquationSystemprotected
m_checktimeNektar::SolverUtils::EquationSystemprotected
m_chiNektar::Bidomainprivate
m_commNektar::SolverUtils::EquationSystemprotected
m_derivedfieldsNektar::SolverUtils::EquationSystemprotected
m_epsilonNektar::SolverUtils::UnsteadySystemprotected
m_expdimNektar::SolverUtils::EquationSystemprotected
m_explicitAdvectionNektar::SolverUtils::UnsteadySystemprotected
m_explicitDiffusionNektar::SolverUtils::UnsteadySystemprotected
m_explicitReactionNektar::SolverUtils::UnsteadySystemprotected
m_fieldMetaDataMapNektar::SolverUtils::EquationSystemprotected
m_fieldsNektar::SolverUtils::EquationSystemprotected
m_filtersNektar::SolverUtils::UnsteadySystemprotected
m_fintimeNektar::SolverUtils::EquationSystemprotected
m_fldNektar::SolverUtils::EquationSystemprotected
m_gradtanNektar::SolverUtils::EquationSystemprotected
m_graphNektar::SolverUtils::EquationSystemprotected
m_halfModeNektar::SolverUtils::EquationSystemprotected
m_HomoDirecNektar::SolverUtils::EquationSystemprotected
m_homogen_dealiasingNektar::SolverUtils::EquationSystemprotected
m_HomogeneousTypeNektar::SolverUtils::EquationSystemprotected
m_homoInitialFwdNektar::SolverUtils::UnsteadySystemprotected
m_infostepsNektar::SolverUtils::UnsteadySystemprotected
m_initialStepNektar::SolverUtils::EquationSystemprotected
m_interpIndsNektar::SolverUtils::EquationSystemprotected
m_interpWeightsNektar::SolverUtils::EquationSystemprotected
m_intSchemeNektar::SolverUtils::UnsteadySystemprotected
m_intSolnNektar::SolverUtils::UnsteadySystemprotected
m_intVariablesNektar::SolverUtils::UnsteadySystemprotected
m_lambdaNektar::SolverUtils::EquationSystemprotected
m_LhomXNektar::SolverUtils::EquationSystemprotected
m_LhomYNektar::SolverUtils::EquationSystemprotected
m_LhomZNektar::SolverUtils::EquationSystemprotected
m_loadedFieldsNektar::SolverUtils::EquationSystemprotected
m_multipleModesNektar::SolverUtils::EquationSystemprotected
m_nchkNektar::SolverUtils::EquationSystemprotected
m_npointsXNektar::SolverUtils::EquationSystemprotected
m_npointsYNektar::SolverUtils::EquationSystemprotected
m_npointsZNektar::SolverUtils::EquationSystemprotected
m_NumQuadPointsErrorNektar::SolverUtils::EquationSystemprotected
m_odeNektar::SolverUtils::UnsteadySystemprotected
m_projectionTypeNektar::SolverUtils::EquationSystemprotected
m_sessionNektar::SolverUtils::EquationSystemprotected
m_sessionNameNektar::SolverUtils::EquationSystemprotected
m_sigmaexNektar::Bidomainprivate
m_sigmaeyNektar::Bidomainprivate
m_sigmaezNektar::Bidomainprivate
m_sigmaixNektar::Bidomainprivate
m_sigmaiyNektar::Bidomainprivate
m_sigmaizNektar::Bidomainprivate
m_singleModeNektar::SolverUtils::EquationSystemprotected
m_spacedimNektar::SolverUtils::EquationSystemprotected
m_specHP_dealiasingNektar::SolverUtils::EquationSystemprotected
m_stepsNektar::SolverUtils::EquationSystemprotected
m_stimDurationNektar::Bidomainprivate
m_tanbasisNektar::SolverUtils::EquationSystemprotected
m_timeNektar::SolverUtils::EquationSystemprotected
m_timestepNektar::SolverUtils::EquationSystemprotected
m_traceNormalsNektar::SolverUtils::EquationSystemprotected
m_useFFTNektar::SolverUtils::EquationSystemprotected
m_vardiffiNektar::Bidomainprivate
m_vardiffieNektar::Bidomainprivate
MaxTimeStepEstimator()Nektar::SolverUtils::UnsteadySystemprotected
MemoryManager< Bidomain > classNektar::Bidomainfriend
nocase_cmp(const std::string &s1, const std::string &s2)Nektar::SolverUtils::EquationSysteminlineprotected
NoCaseStringCompare(const std::string &s1, const std::string &s2)Nektar::SolverUtils::EquationSystem
NumericalFlux(Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)Nektar::SolverUtils::EquationSysteminline
NumericalFlux(Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)Nektar::SolverUtils::EquationSysteminline
NumFluxforScalar(const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)Nektar::SolverUtils::EquationSysteminline
NumFluxforVector(const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)Nektar::SolverUtils::EquationSysteminline
Output()Nektar::SolverUtils::EquationSysteminline
PrintSummary(std::ostream &out)Nektar::SolverUtils::EquationSysteminline
ResetSessionName(std::string newname)Nektar::SolverUtils::EquationSysteminline
ScanForHistoryPoints()Nektar::SolverUtils::EquationSystem
SessionSummary(SummaryList &vSummary)Nektar::SolverUtils::EquationSystem
SetBoundaryConditions(NekDouble time)Nektar::SolverUtils::EquationSystem
SetCheckpointNumber(int num)Nektar::SolverUtils::EquationSysteminline
SetCheckpointSteps(int num)Nektar::SolverUtils::EquationSysteminline
SetInitialConditions(NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)Nektar::SolverUtils::EquationSysteminline
SetInitialStep(const int step)Nektar::SolverUtils::EquationSysteminline
SetLambda(NekDouble lambda)Nektar::SolverUtils::EquationSysteminline
SetModifiedBasis(const bool modbasis)Nektar::SolverUtils::EquationSysteminline
SetSteps(const int steps)Nektar::SolverUtils::EquationSysteminline
SetTime(const NekDouble time)Nektar::SolverUtils::EquationSysteminline
SetUpBaseFields(SpatialDomains::MeshGraphSharedPtr &mesh)Nektar::SolverUtils::EquationSystemprotected
SetUpTraceNormals(void)Nektar::SolverUtils::EquationSystem
SVVVarDiffCoeff(const Array< OneD, Array< OneD, NekDouble > > vel, StdRegions::VarCoeffMap &varCoeffMap)Nektar::SolverUtils::UnsteadySystemprotected
tmp1Nektar::Bidomainprivate
tmp2Nektar::Bidomainprivate
tmp3Nektar::Bidomainprivate
TransCoeffToPhys()Nektar::SolverUtils::EquationSysteminline
TransPhysToCoeff()Nektar::SolverUtils::EquationSysteminline
UnsteadySystem(const LibUtilities::SessionReaderSharedPtr &pSession)Nektar::SolverUtils::UnsteadySystemprotected
UpdateFieldMetaDataMap()Nektar::SolverUtils::EquationSysteminline
UpdateFields()Nektar::SolverUtils::EquationSysteminline
v_AppendOutput1D(Array< OneD, Array< OneD, NekDouble > > &solution1D)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_DoInitialise()Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_DoSolve()Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_EvaluateExactSolution(unsigned int field, Array< OneD, NekDouble > &outfield, const NekDouble time)Nektar::SolverUtils::EquationSystemprotectedvirtual
v_ExtraFldOutput(std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)Nektar::SolverUtils::EquationSystemprotectedvirtual
v_GenerateSummary(SummaryList &s)Nektar::Bidomainprotectedvirtual
v_GetPressure(void)Nektar::SolverUtils::EquationSystemprotectedvirtual
v_GetTimeStep(const Array< OneD, const Array< OneD, NekDouble > > &inarray)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_InitObject()Nektar::Bidomainprotectedvirtual
v_L2Error(unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false)Nektar::SolverUtils::EquationSystemprotectedvirtual
v_LinfError(unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)Nektar::SolverUtils::EquationSystemprotectedvirtual
v_NegatedOp()Nektar::SolverUtils::EquationSystemvirtual
v_NumericalFlux(Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_NumericalFlux(Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_NumFluxforScalar(const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_NumFluxforVector(const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_Output(void)Nektar::SolverUtils::EquationSystemprotectedvirtual
v_PostIntegrate(int step)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_PreIntegrate(int step)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_SetInitialConditions(NekDouble initialtime, bool dumpInitialConditions, const int domain)Nektar::Bidomainprotectedvirtual
v_SteadyStateCheck(int step)Nektar::SolverUtils::UnsteadySystemprotectedvirtual
v_TransCoeffToPhys()Nektar::SolverUtils::EquationSystemprotectedvirtual
v_TransPhysToCoeff()Nektar::SolverUtils::EquationSystemprotectedvirtual
WeakAdvectionDivergenceForm(const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)Nektar::SolverUtils::EquationSystem
WeakAdvectionGreensDivergenceForm(const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)Nektar::SolverUtils::EquationSystem
WeakAdvectionNonConservativeForm(const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, bool UseContCoeffs=false)Nektar::SolverUtils::EquationSystem
WeakDGAdvection(const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false, int nvariables=0)Nektar::SolverUtils::EquationSystem
WeakDGDiffusion(const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false)Nektar::SolverUtils::EquationSystem
WriteFld(const std::string &outname)Nektar::SolverUtils::EquationSystem
WriteFld(const std::string &outname, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)Nektar::SolverUtils::EquationSystem
WriteHistoryData(std::ostream &out)Nektar::SolverUtils::EquationSystem
ZeroPhysFields()Nektar::SolverUtils::EquationSystem
~Bidomain()Nektar::Bidomainvirtual
~EquationSystem()Nektar::SolverUtils::EquationSystemvirtual
~UnsteadySystem()Nektar::SolverUtils::UnsteadySystemvirtual
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