| __del__(self) | CellMLToNektar.pycml.cellml_model | |
| __init__(self) | CellMLToNektar.pycml.cellml_model | |
| _add_component(self, comp, special=False) | CellMLToNektar.pycml.cellml_model | private |
| _add_sorted_assignment(self, a) | CellMLToNektar.pycml.cellml_model | private |
| _add_units_obj(self, units) | CellMLToNektar.pycml.cellml_model | private |
| _add_variable(self, var, varname, compname) | CellMLToNektar.pycml.cellml_model | private |
| _build_units_dictionary(self) | CellMLToNektar.pycml.cellml_model | private |
| _check_assigned_vars(self, assignments, xml_context=False) | CellMLToNektar.pycml.cellml_model | private |
| _check_cellml_subset(self, math_elts, root=True) | CellMLToNektar.pycml.cellml_model | private |
| _check_connection_units(self, check_for_units_conversions=False) | CellMLToNektar.pycml.cellml_model | private |
| _check_dimensional_consistency(self, assignment_exprs, xml_context=False, warn_on_units_errors=False, check_for_units_conversions=False) | CellMLToNektar.pycml.cellml_model | private |
| _check_maths_name_references(self, expr, xml_context=False) | CellMLToNektar.pycml.cellml_model | private |
| _check_unit_cycles(self, unit) | CellMLToNektar.pycml.cellml_model | private |
| _check_variable_mappings(self) | CellMLToNektar.pycml.cellml_model | private |
| _check_variable_units_exist(self) | CellMLToNektar.pycml.cellml_model | private |
| _classify_variables(self, assignment_exprs, xml_context=False) | CellMLToNektar.pycml.cellml_model | private |
| _cml_assignments | CellMLToNektar.pycml.cellml_model | private |
| _cml_components | CellMLToNektar.pycml.cellml_model | private |
| _cml_conversions_needed | CellMLToNektar.pycml.cellml_model | private |
| _cml_sorting_variables_stack | CellMLToNektar.pycml.cellml_model | private |
| _cml_standard_units | CellMLToNektar.pycml.cellml_model | private |
| _cml_units | CellMLToNektar.pycml.cellml_model | private |
| _cml_units_map | CellMLToNektar.pycml.cellml_model | private |
| _cml_validation_errors | CellMLToNektar.pycml.cellml_model | private |
| _cml_validation_warnings | CellMLToNektar.pycml.cellml_model | private |
| _cml_variables | CellMLToNektar.pycml.cellml_model | private |
| _del_component(self, comp) | CellMLToNektar.pycml.cellml_model | private |
| _del_variable(self, varname, compname) | CellMLToNektar.pycml.cellml_model | private |
| _get_units_obj(self, units) | CellMLToNektar.pycml.cellml_model | private |
| _is_new_units_obj(self, units) | CellMLToNektar.pycml.cellml_model | private |
| _order_variables(self, assignment_exprs, xml_context=False) | CellMLToNektar.pycml.cellml_model | private |
| _remove_assignment(self, a) | CellMLToNektar.pycml.cellml_model | private |
| _report_exception(self, e, show_xml_context) | CellMLToNektar.pycml.cellml_model | private |
| _validate_component_hierarchies(self) | CellMLToNektar.pycml.cellml_model | private |
| _validate_connection(self, conn) | CellMLToNektar.pycml.cellml_model | private |
| add_units(self, name, units) | CellMLToNektar.pycml.cellml_model | |
| add_units_conversions(self) | CellMLToNektar.pycml.cellml_model | |
| apply_xpath_1 | CellMLToNektar.pycml.cellml_model | static |
| apply_xpath_2 | CellMLToNektar.pycml.cellml_model | static |
| build_component_hierarchy(self, relationship, namespace=None, name=None, rels=None) | CellMLToNektar.pycml.cellml_model | |
| build_name_dictionaries(self, rebuild=False) | CellMLToNektar.pycml.cellml_model | |
| calculate_extended_dependencies(self, nodes, prune=[], prune_deps=[], state_vars_depend_on_odes=False, state_vars_examined=set()) | CellMLToNektar.pycml.cellml_model | |
| clean_up(self) | CellMLToNektar.pycml.cellml_model | |
| clear_assignments(self) | CellMLToNektar.pycml.cellml_model | |
| do_binding_time_analysis(self) | CellMLToNektar.pycml.cellml_model | |
| find_free_vars(self) | CellMLToNektar.pycml.cellml_model | |
| find_state_vars(self) | CellMLToNektar.pycml.cellml_model | |
| get_all_units(self) | CellMLToNektar.pycml.cellml_model | |
| get_all_variables(self) | CellMLToNektar.pycml.cellml_model | |
| get_assignments(self) | CellMLToNektar.pycml.cellml_model | |
| get_component_by_name(self, compname) | CellMLToNektar.pycml.cellml_model | |
| get_config(self, config_attr=None) | CellMLToNektar.pycml.cellml_model | |
| get_option(self, option_name) | CellMLToNektar.pycml.cellml_model | |
| get_standard_units(self) | CellMLToNektar.pycml.cellml_model | |
| get_units_by_name(self, uname) | CellMLToNektar.pycml.cellml_model | |
| get_validation_errors(self) | CellMLToNektar.pycml.cellml_model | |
| get_validation_warnings(self) | CellMLToNektar.pycml.cellml_model | |
| get_variable_by_cmeta_id(self, cmeta_id) | CellMLToNektar.pycml.cellml_model | |
| get_variable_by_name(self, compname, varname) | CellMLToNektar.pycml.cellml_model | |
| get_variable_by_oxmeta_name(self, name, throw=True) | CellMLToNektar.pycml.cellml_model | |
| get_variables_by_ontology_term(self, term) | CellMLToNektar.pycml.cellml_model | |
| has_units(self, units) | CellMLToNektar.pycml.cellml_model | |
| is_self_excitatory(self) | CellMLToNektar.pycml.cellml_model | |
| math_xpath_1 | CellMLToNektar.pycml.cellml_model | static |
| math_xpath_2 | CellMLToNektar.pycml.cellml_model | static |
| search_for_assignments(self, comp=None) | CellMLToNektar.pycml.cellml_model | |
| topological_sort(self, node) | CellMLToNektar.pycml.cellml_model | |
| validate(self, xml_context=False, invalid_if_warnings=False, warn_on_units_errors=False, check_for_units_conversions=False, assume_valid=False, **ignored_kwargs) | CellMLToNektar.pycml.cellml_model | |
| validation_error(self, errmsg, level=logging.ERROR) | CellMLToNektar.pycml.cellml_model | |
| validation_warning(self, errmsg, level=logging.WARNING) | CellMLToNektar.pycml.cellml_model | |
| xml(self, stream=None, writer=None, **wargs) | CellMLToNektar.pycml.cellml_model | |
