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Nektar::MultiRegions::DisContField2D Class Reference

#include <DisContField2D.h>

Inheritance diagram for Nektar::MultiRegions::DisContField2D:
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Public Member Functions

 DisContField2D ()
 Default constructor. More...
 
 DisContField2D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &graph2D, const std::string &variable, const bool SetUpJustDG=true, const bool DeclareCoeffPhysArrays=true)
 Constructs a global discontinuous field based on an input mesh with boundary conditions. More...
 
 DisContField2D (const DisContField2D &In, const SpatialDomains::MeshGraphSharedPtr &graph2D, const std::string &variable, const bool SetUpJustDG=false, const bool DeclareCoeffPhysArrays=true)
 
 DisContField2D (const DisContField2D &In, const bool DeclareCoeffPhysArrays=true)
 
virtual ~DisContField2D ()
 Default destructor. More...
 
GlobalLinSysSharedPtr GetGlobalBndLinSys (const GlobalLinSysKey &mkey)
 
NekDouble L2_DGDeriv (const int dir, const Array< OneD, const NekDouble > &soln)
 Calculate the $ L^2 $ error of the $ Q_{\rm dir} $ derivative using the consistent DG evaluation of $ Q_{\rm dir} $. More...
 
void EvaluateHDGPostProcessing (Array< OneD, NekDouble > &outarray)
 Evaluate HDG post-processing to increase polynomial order of solution. More...
 
virtual ExpListSharedPtrv_GetTrace ()
 
- Public Member Functions inherited from Nektar::MultiRegions::ExpList2D
 ExpList2D ()
 Default constructor. More...
 
 ExpList2D (const ExpList2D &In, const bool DeclareCoeffPhysArrays=true)
 Copy constructor. More...
 
 ExpList2D (const ExpList2D &In, const std::vector< unsigned int > &eIDs, const bool DeclareCoeffPhysArrays=true)
 Constructor copying only elements defined in eIds. More...
 
 ExpList2D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &graph2D, const bool DelcareCoeffPhysArrays=true, const std::string &var="DefaultVar")
 Sets up a list of local expansions based on an input mesh. More...
 
 ExpList2D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::ExpansionMap &expansions, const bool DeclareCoeffPhysArrays=true)
 Sets up a list of local expansions based on an expansion Map. More...
 
 ExpList2D (const LibUtilities::SessionReaderSharedPtr &pSession, const LibUtilities::BasisKey &TriBa, const LibUtilities::BasisKey &TriBb, const LibUtilities::BasisKey &QuadBa, const LibUtilities::BasisKey &QuadBb, const SpatialDomains::MeshGraphSharedPtr &graph2D, const LibUtilities::PointsType TriNb=LibUtilities::SIZE_PointsType)
 Sets up a list of local expansions based on an input mesh and separately defined basiskeys. More...
 
 ExpList2D (const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, const ExpListSharedPtr > &bndConstraint, const Array< OneD, const SpatialDomains::BoundaryConditionShPtr > &bndCond, const LocalRegions::ExpansionVector &locexp, const SpatialDomains::MeshGraphSharedPtr &graph3D, const PeriodicMap &periodicFaces, const bool DeclareCoeffPhysArrays=true, const std::string variable="DefaultVar")
 
 ExpList2D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::CompositeMap &domain, const SpatialDomains::MeshGraphSharedPtr &graph3D, const std::string variable="DefaultVar")
 Specialised constructor for Neumann boundary conditions in DisContField3D and ContField3D. More...
 
virtual ~ExpList2D ()
 Destructor. More...
 
- Public Member Functions inherited from Nektar::MultiRegions::ExpList
 ExpList ()
 The default constructor. More...
 
 ExpList (const LibUtilities::SessionReaderSharedPtr &pSession)
 The default constructor. More...
 
 ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph)
 The default constructor. More...
 
 ExpList (const ExpList &in, const std::vector< unsigned int > &eIDs, const bool DeclareCoeffPhysArrays=true)
 Constructor copying only elements defined in eIds. More...
 
 ExpList (const ExpList &in, const bool DeclareCoeffPhysArrays=true)
 The copy constructor. More...
 
virtual ~ExpList ()
 The default destructor. More...
 
int GetNcoeffs (void) const
 Returns the total number of local degrees of freedom $N_{\mathrm{eof}}=\sum_{e=1}^{{N_{\mathrm{el}}}}N^{e}_m$. More...
 
int GetNcoeffs (const int eid) const
 Returns the total number of local degrees of freedom for element eid. More...
 
ExpansionType GetExpType (void)
 Returns the type of the expansion. More...
 
void SetExpType (ExpansionType Type)
 Returns the type of the expansion. More...
 
int EvalBasisNumModesMax (void) const
 Evaulates the maximum number of modes in the elemental basis order over all elements. More...
 
const Array< OneD, int > EvalBasisNumModesMaxPerExp (void) const
 Returns the vector of the number of modes in the elemental basis order over all elements. More...
 
int GetTotPoints (void) const
 Returns the total number of quadrature points m_npoints $=Q_{\mathrm{tot}}$. More...
 
int GetTotPoints (const int eid) const
 Returns the total number of quadrature points for eid's element $=Q_{\mathrm{tot}}$. More...
 
int GetNpoints (void) const
 Returns the total number of quadrature points m_npoints $=Q_{\mathrm{tot}}$. More...
 
int Get1DScaledTotPoints (const NekDouble scale) const
 Returns the total number of qudature points scaled by the factor scale on each 1D direction. More...
 
void SetWaveSpace (const bool wavespace)
 Sets the wave space to the one of the possible configuration true or false. More...
 
void SetModifiedBasis (const bool modbasis)
 Set Modified Basis for the stability analysis. More...
 
void SetPhys (int i, NekDouble val)
 Set the i th value of m_phys to value val. More...
 
bool GetWaveSpace (void) const
 This function returns the third direction expansion condition, which can be in wave space (coefficient) or not It is stored in the variable m_WaveSpace. More...
 
void SetPhys (const Array< OneD, const NekDouble > &inarray)
 Fills the array m_phys. More...
 
void SetPhysArray (Array< OneD, NekDouble > &inarray)
 Sets the array m_phys. More...
 
void SetPhysState (const bool physState)
 This function manually sets whether the array of physical values $\boldsymbol{u}_l$ (implemented as m_phys) is filled or not. More...
 
bool GetPhysState (void) const
 This function indicates whether the array of physical values $\boldsymbol{u}_l$ (implemented as m_phys) is filled or not. More...
 
NekDouble PhysIntegral (void)
 This function integrates a function $f(\boldsymbol{x})$ over the domain consisting of all the elements of the expansion. More...
 
NekDouble PhysIntegral (const Array< OneD, const NekDouble > &inarray)
 This function integrates a function $f(\boldsymbol{x})$ over the domain consisting of all the elements of the expansion. More...
 
void IProductWRTBase_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function calculates the inner product of a function $f(\boldsymbol{x})$ with respect to all {local} expansion modes $\phi_n^e(\boldsymbol{x})$. More...
 
void IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 
void IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function calculates the inner product of a function $f(\boldsymbol{x})$ with respect to the derivative (in direction. More...
 
void IProductWRTDerivBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray)
 This function calculates the inner product of a function $f(\boldsymbol{x})$ with respect to the derivative (in direction. More...
 
void FwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function elementally evaluates the forward transformation of a function $u(\boldsymbol{x})$ onto the global spectral/hp expansion. More...
 
void FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 
void MultiplyByElmtInvMass (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function elementally mulplies the coefficient space of Sin my the elemental inverse of the mass matrix. More...
 
void MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 
void SmoothField (Array< OneD, NekDouble > &field)
 Smooth a field across elements. More...
 
void HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const FlagList &flags, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff=StdRegions::NullVarCoeffMap, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
 Solve helmholtz problem. More...
 
void LinearAdvectionDiffusionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
 Solve Advection Diffusion Reaction. More...
 
void LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
 Solve Advection Diffusion Reaction. More...
 
void FwdTrans_BndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void BwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function elementally evaluates the backward transformation of the global spectral/hp element expansion. More...
 
void BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 
void GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1=NullNekDouble1DArray, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray)
 This function calculates the coordinates of all the elemental quadrature points $\boldsymbol{x}_i$. More...
 
void HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)
 
void HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)
 
void DealiasedProd (const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 
void GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID)
 
void NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID)
 
void NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray)
 
void ApplyGeomInfo ()
 Apply geometry information to each expansion. More...
 
void Reset ()
 Reset geometry information and reset matrices. More...
 
void WriteTecplotHeader (std::ostream &outfile, std::string var="")
 
void WriteTecplotZone (std::ostream &outfile, int expansion=-1)
 
void WriteTecplotField (std::ostream &outfile, int expansion=-1)
 
void WriteTecplotConnectivity (std::ostream &outfile, int expansion=-1)
 
void WriteVtkHeader (std::ostream &outfile)
 
void WriteVtkFooter (std::ostream &outfile)
 
void WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip=0)
 
void WriteVtkPieceFooter (std::ostream &outfile, int expansion)
 
void WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var="v")
 
int GetCoordim (int eid)
 This function returns the dimension of the coordinates of the element eid. More...
 
void SetCoeff (int i, NekDouble val)
 Set the i th coefficiient in m_coeffs to value val. More...
 
void SetCoeffs (int i, NekDouble val)
 Set the i th coefficiient in m_coeffs to value val. More...
 
void SetCoeffsArray (Array< OneD, NekDouble > &inarray)
 Set the m_coeffs array to inarray. More...
 
const Array< OneD, const
NekDouble > & 
GetCoeffs () const
 This function returns (a reference to) the array $\boldsymbol{\hat{u}}_l$ (implemented as m_coeffs) containing all local expansion coefficients. More...
 
void ImposeDirichletConditions (Array< OneD, NekDouble > &outarray)
 Impose Dirichlet Boundary Conditions onto Array. More...
 
void FillBndCondFromField (void)
 Fill Bnd Condition expansion from the values stored in expansion. More...
 
void LocalToGlobal (void)
 Put the coefficients into global ordering using m_coeffs. More...
 
void GlobalToLocal (void)
 Put the coefficients into local ordering and place in m_coeffs. More...
 
NekDouble GetCoeff (int i)
 Get the i th value (coefficient) of m_coeffs. More...
 
NekDouble GetCoeffs (int i)
 Get the i th value (coefficient) of m_coeffs. More...
 
const Array< OneD, const
NekDouble > & 
GetPhys () const
 This function returns (a reference to) the array $\boldsymbol{u}_l$ (implemented as m_phys) containing the function $u^{\delta}(\boldsymbol{x})$ evaluated at the quadrature points. More...
 
NekDouble Linf (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
 This function calculates the $L_\infty$ error of the global spectral/hp element approximation. More...
 
NekDouble L2 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
 This function calculates the $L_2$ error with respect to soln of the global spectral/hp element approximation. More...
 
NekDouble H1 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
 Calculates the $H^1$ error of the global spectral/hp element approximation. More...
 
NekDouble Integral (const Array< OneD, const NekDouble > &inarray)
 
Array< OneD, const NekDoubleHomogeneousEnergy (void)
 This function calculates the energy associated with each one of the modesof a 3D homogeneous nD expansion. More...
 
void SetHomo1DSpecVanVisc (Array< OneD, NekDouble > visc)
 This function sets the Spectral Vanishing Viscosity in homogeneous1D expansion. More...
 
Array< OneD, const unsigned int > GetZIDs (void)
 This function returns a vector containing the wave numbers in z-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More...
 
LibUtilities::TranspositionSharedPtr GetTransposition (void)
 This function returns the transposition class associaed with the homogeneous expansion. More...
 
NekDouble GetHomoLen (void)
 This function returns the Width of homogeneous direction associaed with the homogeneous expansion. More...
 
Array< OneD, const unsigned int > GetYIDs (void)
 This function returns a vector containing the wave numbers in y-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More...
 
void PhysInterp1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function interpolates the physical space points in inarray to outarray using the same points defined in the expansion but where the number of points are rescaled by 1DScale. More...
 
void PhysGalerkinProjection1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function Galerkin projects the physical space points in inarray to outarray where inarray is assumed to be defined in the expansion but where the number of points are rescaled by 1DScale. More...
 
int GetExpSize (void)
 This function returns the number of elements in the expansion. More...
 
int GetNumElmts (void)
 This function returns the number of elements in the expansion which may be different for a homogeoenous extended expansionp. More...
 
const boost::shared_ptr
< LocalRegions::ExpansionVector
GetExp () const
 This function returns the vector of elements in the expansion. More...
 
LocalRegions::ExpansionSharedPtrGetExp (int n) const
 This function returns (a shared pointer to) the local elemental expansion of the $n^{\mathrm{th}}$ element. More...
 
LocalRegions::ExpansionSharedPtrGetExp (const Array< OneD, const NekDouble > &gloCoord)
 This function returns (a shared pointer to) the local elemental expansion containing the arbitrary point given by gloCoord. More...
 
int GetExpIndex (const Array< OneD, const NekDouble > &gloCoord, NekDouble tol=0.0, bool returnNearestElmt=false)
 
int GetExpIndex (const Array< OneD, const NekDouble > &gloCoords, Array< OneD, NekDouble > &locCoords, NekDouble tol=0.0, bool returnNearestElmt=false)
 
int GetCoeff_Offset (int n) const
 Get the start offset position for a global list of m_coeffs correspoinding to element n. More...
 
int GetPhys_Offset (int n) const
 Get the start offset position for a global list of m_phys correspoinding to element n. More...
 
int GetOffset_Elmt_Id (int n) const
 Get the element id associated with the n th consecutive block of data in m_phys and m_coeffs. More...
 
Array< OneD, NekDouble > & UpdateCoeffs ()
 This function returns (a reference to) the array $\boldsymbol{\hat{u}}_l$ (implemented as m_coeffs) containing all local expansion coefficients. More...
 
Array< OneD, NekDouble > & UpdatePhys ()
 This function returns (a reference to) the array $\boldsymbol{u}_l$ (implemented as m_phys) containing the function $u^{\delta}(\boldsymbol{x})$ evaluated at the quadrature points. More...
 
void PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)
 
void PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray)
 This function discretely evaluates the derivative of a function $f(\boldsymbol{x})$ on the domain consisting of all elements of the expansion. More...
 
void PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)
 
const Array< OneD, const
boost::shared_ptr< ExpList > > & 
GetBndCondExpansions ()
 
boost::shared_ptr< ExpList > & UpdateBndCondExpansion (int i)
 
void Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)
 
void Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)
 
boost::shared_ptr< ExpList > & GetTrace ()
 
boost::shared_ptr
< AssemblyMapDG > & 
GetTraceMap (void)
 
const Array< OneD, const int > & GetTraceBndMap (void)
 
void GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals)
 
void AddTraceIntegral (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray)
 
void AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray)
 
void AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray)
 
void GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)
 
void GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)
 
const std::vector< bool > & GetLeftAdjacentFaces (void) const
 
void ExtractTracePhys (Array< OneD, NekDouble > &outarray)
 
void ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
const Array< OneD, const
SpatialDomains::BoundaryConditionShPtr > & 
GetBndConditions ()
 
Array< OneD,
SpatialDomains::BoundaryConditionShPtr > & 
UpdateBndConditions ()
 
void EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble=NekConstants::kNekUnsetDouble, const NekDouble=NekConstants::kNekUnsetDouble)
 
void GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 This function calculates the result of the multiplication of a matrix of type specified by mkey with a vector given by inarray. More...
 
void GeneralMatrixOp_IterPerExp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void SetUpPhysNormals ()
 
void GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)
 
void GetBndElmtExpansion (int i, boost::shared_ptr< ExpList > &result)
 
void ExtractElmtToBndPhys (int i, Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary)
 
void ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt)
 
void GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals)
 
void GeneralGetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef, int NumHomoDir=0, Array< OneD, LibUtilities::BasisSharedPtr > &HomoBasis=LibUtilities::NullBasisSharedPtr1DArray, std::vector< NekDouble > &HomoLen=LibUtilities::NullNekDoubleVector, bool homoStrips=false, std::vector< unsigned int > &HomoSIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoZIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoYIDs=LibUtilities::NullUnsignedIntVector)
 
const
NekOptimize::GlobalOptParamSharedPtr
GetGlobalOptParam (void)
 
std::map< int,
RobinBCInfoSharedPtr
GetRobinBCInfo ()
 
void GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces=NullPeriodicMap)
 
std::vector
< LibUtilities::FieldDefinitionsSharedPtr
GetFieldDefinitions ()
 
void GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef)
 
void AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata)
 Append the element data listed in elements fielddef->m_ElementIDs onto fielddata. More...
 
void AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs)
 Append the data in coeffs listed in elements fielddef->m_ElementIDs onto fielddata. More...
 
void ExtractElmtDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs)
 Extract the data in fielddata into the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More...
 
void ExtractCoeffsToCoeffs (const boost::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs)
 Extract the data from fromField using fromExpList the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More...
 
void ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs)
 Extract the data in fielddata into the coeffs. More...
 
boost::shared_ptr< ExpListGetSharedThisPtr ()
 Returns a shared pointer to the current object. More...
 
boost::shared_ptr
< LibUtilities::SessionReader
GetSession ()
 Returns the session object. More...
 
boost::shared_ptr
< LibUtilities::Comm
GetComm ()
 Returns the comm object. More...
 
SpatialDomains::MeshGraphSharedPtr GetGraph ()
 
LibUtilities::BasisSharedPtr GetHomogeneousBasis (void)
 
boost::shared_ptr< ExpList > & GetPlane (int n)
 
void CreateCollections (Collections::ImplementationType ImpType=Collections::eNoImpType)
 Construct collections of elements containing a single element type and polynomial order from the list of expansions. More...
 
void ClearGlobalLinSysManager (void)
 

Protected Member Functions

const Array< OneD, const
LibUtilities::BasisSharedPtr > & 
GetBase () const
 This function gets the shared point to basis. More...
 
LibUtilities::BasisType GetBasisType (const int dir) const
 This function returns the type of basis used in the dir direction. More...
 
void SetUpDG (const std::string="DefaultVar")
 Set up all DG member variables and maps. More...
 
bool SameTypeOfBoundaryConditions (const DisContField2D &In)
 
void GenerateBoundaryConditionExpansion (const SpatialDomains::MeshGraphSharedPtr &graph2D, const SpatialDomains::BoundaryConditions &bcs, const std::string &variable, const bool DeclareCoeffPhysArrays=true)
 This function discretises the boundary conditions by setting up a list of one-dimensional boundary expansions. More...
 
void FindPeriodicEdges (const SpatialDomains::BoundaryConditions &bcs, const std::string &variable)
 Determine the periodic edges and vertices for the given graph. More...
 
bool IsLeftAdjacentEdge (const int n, const int e)
 
virtual void v_GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)
 This method extracts the "forward" and "backward" trace data from the array field and puts the data into output vectors Fwd and Bwd. More...
 
virtual void v_GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)
 
virtual void v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray)
 
virtual void v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray)
 Add trace contributions into elemental coefficient spaces. More...
 
virtual void v_AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray)
 Add trace contributions into elemental coefficient spaces. More...
 
virtual void v_ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This method extracts the trace (edges in 2D) from the field inarray and puts the values in outarray. More...
 
virtual void v_ExtractTracePhys (Array< OneD, NekDouble > &outarray)
 
virtual void v_FillBndCondFromField ()
 
virtual void v_HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const FlagList &flags, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff, const Array< OneD, const NekDouble > &dirForcing)
 
virtual void v_GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 Calculates the result of the multiplication of a global matrix of type specified by mkey with a vector given by inarray. More...
 
virtual void v_GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)
 Set up a list of element IDs and edge IDs that link to the boundary conditions. More...
 
virtual void v_GetBndElmtExpansion (int i, boost::shared_ptr< ExpList > &result)
 
virtual void v_Reset ()
 Reset this field, so that geometry information can be updated. More...
 
virtual void v_GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces)
 Obtain a copy of the periodic edges and vertices for this field. More...
 
virtual AssemblyMapDGSharedPtrv_GetTraceMap ()
 
virtual const Array< OneD,
const
MultiRegions::ExpListSharedPtr > & 
v_GetBndCondExpansions ()
 
virtual const Array< OneD,
const
SpatialDomains::BoundaryConditionShPtr > & 
v_GetBndConditions ()
 
virtual
MultiRegions::ExpListSharedPtr
v_UpdateBndCondExpansion (int i)
 
virtual Array< OneD,
SpatialDomains::BoundaryConditionShPtr > & 
v_UpdateBndConditions ()
 
virtual void v_EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble x2_in=NekConstants::kNekUnsetDouble, const NekDouble x3_in=NekConstants::kNekUnsetDouble)
 
virtual std::map< int,
RobinBCInfoSharedPtr
v_GetRobinBCInfo ()
 Search through the edge expansions and identify which ones have Robin/Mixed type boundary conditions. More...
 
- Protected Member Functions inherited from Nektar::MultiRegions::ExpList2D
void v_Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)
 Upwind the Fwd and Bwd states based on the one- dimensional normal velocity field given by Vn. More...
 
void v_GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals)
 For each local element, copy the normals stored in the element list into the array normals. More...
 
- Protected Member Functions inherited from Nektar::MultiRegions::ExpList
boost::shared_ptr< DNekMatGenGlobalMatrixFull (const GlobalLinSysKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap)
 
const DNekScalBlkMatSharedPtr GenBlockMatrix (const GlobalMatrixKey &gkey)
 This function assembles the block diagonal matrix of local matrices of the type mtype. More...
 
const DNekScalBlkMatSharedPtrGetBlockMatrix (const GlobalMatrixKey &gkey)
 
void MultiplyByBlockMatrix (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
boost::shared_ptr< GlobalMatrixGenGlobalMatrix (const GlobalMatrixKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap)
 Generates a global matrix from the given key and map. More...
 
void GlobalEigenSystem (const boost::shared_ptr< DNekMat > &Gmat, Array< OneD, NekDouble > &EigValsReal, Array< OneD, NekDouble > &EigValsImag, Array< OneD, NekDouble > &EigVecs=NullNekDouble1DArray)
 
boost::shared_ptr< GlobalLinSysGenGlobalLinSys (const GlobalLinSysKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap)
 This operation constructs the global linear system of type mkey. More...
 
boost::shared_ptr< GlobalLinSysGenGlobalBndLinSys (const GlobalLinSysKey &mkey, const AssemblyMapSharedPtr &locToGloMap)
 Generate a GlobalLinSys from information provided by the key "mkey" and the mapping provided in LocToGloBaseMap. More...
 
void ReadGlobalOptimizationParameters ()
 
virtual int v_GetNumElmts (void)
 
virtual void v_Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)
 
virtual const Array< OneD,
const int > & 
v_GetTraceBndMap ()
 
virtual const std::vector< bool > & v_GetLeftAdjacentFaces (void) const
 
virtual void v_MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)
 
virtual void v_LinearAdvectionDiffusionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
 
virtual void v_LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
 
virtual void v_ImposeDirichletConditions (Array< OneD, NekDouble > &outarray)
 
virtual void v_LocalToGlobal (void)
 
virtual void v_GlobalToLocal (void)
 
virtual void v_BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)
 
virtual void v_BwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
virtual void v_FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)
 
virtual void v_FwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
virtual void v_SmoothField (Array< OneD, NekDouble > &field)
 
virtual void v_IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)
 
virtual void v_IProductWRTBase_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
virtual void v_GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray)
 
virtual void v_PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2)
 
virtual void v_PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)
 
virtual void v_PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)
 
virtual void v_HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)
 
virtual void v_HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)
 
virtual void v_DealiasedProd (const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
 
virtual void v_GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID)
 
virtual void v_NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID)
 
virtual void v_NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray)
 
virtual void v_ExtractElmtToBndPhys (int i, Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary)
 
virtual void v_ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt)
 
virtual void v_GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals)
 
virtual std::vector
< LibUtilities::FieldDefinitionsSharedPtr
v_GetFieldDefinitions (void)
 
virtual void v_GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef)
 
virtual void v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata)
 
virtual void v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs)
 
virtual void v_ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs)
 Extract data from raw field data into expansion list. More...
 
virtual void v_ExtractCoeffsToCoeffs (const boost::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs)
 
virtual void v_WriteTecplotHeader (std::ostream &outfile, std::string var="")
 
virtual void v_WriteTecplotZone (std::ostream &outfile, int expansion)
 
virtual void v_WriteTecplotField (std::ostream &outfile, int expansion)
 
virtual void v_WriteTecplotConnectivity (std::ostream &outfile, int expansion)
 
virtual void v_WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var)
 
virtual NekDouble v_L2 (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
 
virtual NekDouble v_Integral (const Array< OneD, const NekDouble > &inarray)
 
virtual Array< OneD, const
NekDouble
v_HomogeneousEnergy (void)
 
virtual
LibUtilities::TranspositionSharedPtr 
v_GetTransposition (void)
 
virtual NekDouble v_GetHomoLen (void)
 
virtual Array< OneD, const
unsigned int > 
v_GetZIDs (void)
 
virtual Array< OneD, const
unsigned int > 
v_GetYIDs (void)
 
virtual void v_ClearGlobalLinSysManager (void)
 
void ExtractFileBCs (const std::string &fileName, const std::string &varName, const boost::shared_ptr< ExpList > locExpList)
 

Protected Attributes

Array< OneD,
LibUtilities::BasisSharedPtr
m_base
 
Array< OneD,
MultiRegions::ExpListSharedPtr
m_bndCondExpansions
 An object which contains the discretised boundary conditions. More...
 
Array< OneD,
SpatialDomains::BoundaryConditionShPtr
m_bndConditions
 An array which contains the information about the boundary condition on the different boundary regions. More...
 
GlobalLinSysMapShPtr m_globalBndMat
 
ExpListSharedPtr m_trace
 
AssemblyMapDGSharedPtr m_traceMap
 
LocTraceToTraceMapSharedPtr m_locTraceToTraceMap
 
Array< OneD, Array< OneD,
unsigned int > > 
m_mapEdgeToElmn
 
Array< OneD, Array< OneD,
unsigned int > > 
m_signEdgeToElmn
 
Array< OneD,
StdRegions::Orientation
m_edgedir
 
std::set< int > m_boundaryEdges
 A set storing the global IDs of any boundary edges. More...
 
PeriodicMap m_periodicVerts
 A map which identifies groups of periodic vertices. More...
 
PeriodicMap m_periodicEdges
 A map which identifies pairs of periodic edges. More...
 
std::vector< int > m_periodicFwdCopy
 A vector indicating degress of freedom which need to be copied from forwards to backwards space in case of a periodic boundary condition. More...
 
std::vector< int > m_periodicBwdCopy
 
std::vector< bool > m_leftAdjacentEdges
 
- Protected Attributes inherited from Nektar::MultiRegions::ExpList
LibUtilities::CommSharedPtr m_comm
 Communicator. More...
 
LibUtilities::SessionReaderSharedPtr m_session
 Session. More...
 
SpatialDomains::MeshGraphSharedPtr m_graph
 Mesh associated with this expansion list. More...
 
int m_ncoeffs
 The total number of local degrees of freedom. m_ncoeffs $=N_{\mathrm{eof}}=\sum_{e=1}^{{N_{\mathrm{el}}}}N^{e}_l$. More...
 
int m_npoints
 
Array< OneD, NekDoublem_coeffs
 Concatenation of all local expansion coefficients. More...
 
Array< OneD, NekDoublem_phys
 The global expansion evaluated at the quadrature points. More...
 
bool m_physState
 The state of the array m_phys. More...
 
boost::shared_ptr
< LocalRegions::ExpansionVector
m_exp
 The list of local expansions. More...
 
Collections::CollectionVector m_collections
 
std::vector< int > m_coll_coeff_offset
 Offset of elemental data into the array m_coeffs. More...
 
std::vector< int > m_coll_phys_offset
 Offset of elemental data into the array m_phys. More...
 
Array< OneD, int > m_coeff_offset
 Offset of elemental data into the array m_coeffs. More...
 
Array< OneD, int > m_phys_offset
 Offset of elemental data into the array m_phys. More...
 
Array< OneD, int > m_offset_elmt_id
 Array containing the element id m_offset_elmt_id[n] that the n^th consecutive block of data in m_coeffs and m_phys is associated, i.e. for an array of constant expansion size and single shape elements m_phys[n*m_npoints] is the data related to m_exp[m_offset_elmt_id[n]];. More...
 
NekOptimize::GlobalOptParamSharedPtr m_globalOptParam
 
BlockMatrixMapShPtr m_blockMat
 
bool m_WaveSpace
 

Additional Inherited Members

- Public Attributes inherited from Nektar::MultiRegions::ExpList
ExpansionType m_expType
 
- Static Protected Member Functions inherited from Nektar::MultiRegions::ExpList
static
SpatialDomains::BoundaryConditionShPtr 
GetBoundaryCondition (const SpatialDomains::BoundaryConditionCollection &collection, unsigned int index, const std::string &variable)
 

Detailed Description

Abstraction of a global discontinuous two-dimensional spectral/hp element expansion which approximates the solution of a set of partial differential equations.

Definition at line 52 of file DisContField2D.h.

Constructor & Destructor Documentation

Nektar::MultiRegions::DisContField2D::DisContField2D ( void  )

Default constructor.

Definition at line 63 of file DisContField2D.cpp.

64  : ExpList2D (),
66  m_bndConditions (),
68  {
69  }
static ExpListSharedPtr NullExpListSharedPtr
Definition: ExpList.h:1395
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
ExpList2D()
Default constructor.
Definition: ExpList2D.cpp:69
Nektar::MultiRegions::DisContField2D::DisContField2D ( const LibUtilities::SessionReaderSharedPtr pSession,
const SpatialDomains::MeshGraphSharedPtr graph2D,
const std::string &  variable,
const bool  SetUpJustDG = true,
const bool  DeclareCoeffPhysArrays = true 
)

Constructs a global discontinuous field based on an input mesh with boundary conditions.

Definition at line 99 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::EvaluateBoundaryConditions(), FindPeriodicEdges(), GenerateBoundaryConditionExpansion(), Nektar::MultiRegions::ExpList::GetBoundaryToElmtMap(), m_bndCondExpansions, Nektar::MultiRegions::ExpList::m_session, SetUpDG(), and Nektar::MultiRegions::ExpList::SetUpPhysNormals().

105  : ExpList2D(pSession, graph2D, DeclareCoeffPhysArrays, variable),
107  m_bndConditions(),
109  m_periodicVerts(),
110  m_periodicEdges(),
113  {
114 
115  if (variable.compare("DefaultVar") != 0) // do not set up BCs if default variable
116  {
117  SpatialDomains::BoundaryConditions bcs(m_session, graph2D);
118  GenerateBoundaryConditionExpansion(graph2D, bcs, variable,
119  DeclareCoeffPhysArrays);
120 
121  if (DeclareCoeffPhysArrays)
122  {
123  EvaluateBoundaryConditions(0.0, variable);
124  }
125 
126  // Find periodic edges for this variable.
127  FindPeriodicEdges(bcs, variable);
128  }
129 
130  if (SetUpJustDG)
131  {
132  SetUpDG(variable);
133  }
134  else
135  {
136  // Set element edges to point to Robin BC edges if required.
137  int i, cnt;
138  Array<OneD, int> ElmtID, EdgeID;
139  GetBoundaryToElmtMap(ElmtID, EdgeID);
140 
141  for(cnt = i = 0; i < m_bndCondExpansions.num_elements(); ++i)
142  {
144  int e;
145  locExpList = m_bndCondExpansions[i];
146 
147  for(e = 0; e < locExpList->GetExpSize(); ++e)
148  {
150  (*m_exp)[ElmtID[cnt+e]]->
151  as<LocalRegions::Expansion2D>();
153  locExpList->GetExp(e)->
154  as<LocalRegions::Expansion1D>();
156  locExpList->GetExp(e)->
157  as<LocalRegions::Expansion> ();
158 
159  exp2d->SetEdgeExp(EdgeID[cnt+e], exp1d);
160  exp1d->SetAdjacentElementExp(EdgeID[cnt+e], exp2d);
161  }
162  cnt += m_bndCondExpansions[i]->GetExpSize();
163  }
164 
165  if(m_session->DefinesSolverInfo("PROJECTION"))
166  {
167  std::string ProjectStr =
168  m_session->GetSolverInfo("PROJECTION");
169  if((ProjectStr == "MixedCGDG") ||
170  (ProjectStr == "Mixed_CG_Discontinuous"))
171  {
172  SetUpDG();
173  }
174  else
175  {
177  }
178  }
179  else
180  {
182  }
183  }
184  }
void FindPeriodicEdges(const SpatialDomains::BoundaryConditions &bcs, const std::string &variable)
Determine the periodic edges and vertices for the given graph.
static ExpListSharedPtr NullExpListSharedPtr
Definition: ExpList.h:1395
void EvaluateBoundaryConditions(const NekDouble time=0.0, const std::string varName="", const NekDouble=NekConstants::kNekUnsetDouble, const NekDouble=NekConstants::kNekUnsetDouble)
Definition: ExpList.h:2091
std::vector< int > m_periodicFwdCopy
A vector indicating degress of freedom which need to be copied from forwards to backwards space in ca...
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
PeriodicMap m_periodicVerts
A map which identifies groups of periodic vertices.
void GetBoundaryToElmtMap(Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)
Definition: ExpList.h:2144
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
boost::shared_ptr< ExpList > ExpListSharedPtr
Shared pointer to an ExpList object.
LibUtilities::SessionReaderSharedPtr m_session
Session.
Definition: ExpList.h:910
boost::shared_ptr< Expansion > ExpansionSharedPtr
Definition: Expansion.h:68
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
void SetUpDG(const std::string="DefaultVar")
Set up all DG member variables and maps.
ExpList2D()
Default constructor.
Definition: ExpList2D.cpp:69
void GenerateBoundaryConditionExpansion(const SpatialDomains::MeshGraphSharedPtr &graph2D, const SpatialDomains::BoundaryConditions &bcs, const std::string &variable, const bool DeclareCoeffPhysArrays=true)
This function discretises the boundary conditions by setting up a list of one-dimensional boundary ex...
boost::shared_ptr< Expansion1D > Expansion1DSharedPtr
Definition: Expansion1D.h:53
boost::shared_ptr< Expansion2D > Expansion2DSharedPtr
Definition: Expansion1D.h:49
Nektar::MultiRegions::DisContField2D::DisContField2D ( const DisContField2D In,
const SpatialDomains::MeshGraphSharedPtr graph2D,
const std::string &  variable,
const bool  SetUpJustDG = false,
const bool  DeclareCoeffPhysArrays = true 
)

Definition at line 191 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::EvaluateBoundaryConditions(), FindPeriodicEdges(), GenerateBoundaryConditionExpansion(), Nektar::MultiRegions::ExpList::GetBoundaryToElmtMap(), m_bndCondExpansions, m_boundaryEdges, m_globalBndMat, m_leftAdjacentEdges, m_locTraceToTraceMap, m_periodicBwdCopy, m_periodicEdges, m_periodicFwdCopy, m_periodicVerts, Nektar::MultiRegions::ExpList::m_session, m_trace, m_traceMap, SameTypeOfBoundaryConditions(), SetUpDG(), and Nektar::MultiRegions::ExpList::SetUpPhysNormals().

197  : ExpList2D(In,DeclareCoeffPhysArrays),
199  {
200  // Set up boundary conditions for this variable.
201  // Do not set up BCs if default variable
202  if(variable.compare("DefaultVar") != 0)
203  {
204  SpatialDomains::BoundaryConditions bcs(m_session, graph2D);
205  GenerateBoundaryConditionExpansion(graph2D, bcs, variable);
206 
207  if (DeclareCoeffPhysArrays)
208  {
209  EvaluateBoundaryConditions(0.0, variable);
210  }
211 
213  {
214  // Find periodic edges for this variable.
215  FindPeriodicEdges(bcs, variable);
216 
217  if(SetUpJustDG)
218  {
219  SetUpDG();
220  }
221  else
222  {
223  // set elmt edges to point to robin bc edges if required
224  int i, cnt = 0;
225  Array<OneD, int> ElmtID,EdgeID;
226  GetBoundaryToElmtMap(ElmtID,EdgeID);
227 
228  for (i = 0; i < m_bndCondExpansions.num_elements(); ++i)
229  {
231 
232  int e;
233  locExpList = m_bndCondExpansions[i];
234 
235  for(e = 0; e < locExpList->GetExpSize(); ++e)
236  {
238  = (*m_exp)[ElmtID[cnt+e]]->
239  as<LocalRegions::Expansion2D>();
241  = locExpList->GetExp(e)->
242  as<LocalRegions::Expansion1D>();
244  = locExpList->GetExp(e)->
245  as<LocalRegions::Expansion> ();
246 
247  exp2d->SetEdgeExp(EdgeID[cnt+e], exp1d);
248  exp1d->SetAdjacentElementExp(EdgeID[cnt+e],
249  exp2d);
250  }
251 
252  cnt += m_bndCondExpansions[i]->GetExpSize();
253  }
254 
255 
256  if (m_session->DefinesSolverInfo("PROJECTION"))
257  {
258  std::string ProjectStr =
259  m_session->GetSolverInfo("PROJECTION");
260 
261  if ((ProjectStr == "MixedCGDG") ||
262  (ProjectStr == "Mixed_CG_Discontinuous"))
263  {
264  SetUpDG();
265  }
266  else
267  {
269  }
270  }
271  else
272  {
274  }
275  }
276  }
277  else
278  {
279  if (SetUpJustDG)
280  {
281  m_globalBndMat = In.m_globalBndMat;
282  m_trace = In.m_trace;
283  m_traceMap = In.m_traceMap;
284  m_locTraceToTraceMap = In.m_locTraceToTraceMap;
285  m_periodicEdges = In.m_periodicEdges;
286  m_periodicVerts = In.m_periodicVerts;
287  m_periodicFwdCopy = In.m_periodicFwdCopy;
288  m_periodicBwdCopy = In.m_periodicBwdCopy;
289  m_boundaryEdges = In.m_boundaryEdges;
290  m_leftAdjacentEdges = In.m_leftAdjacentEdges;
291  }
292  else
293  {
294  m_globalBndMat = In.m_globalBndMat;
295  m_trace = In.m_trace;
296  m_traceMap = In.m_traceMap;
297  m_locTraceToTraceMap = In.m_locTraceToTraceMap;
298  m_periodicEdges = In.m_periodicEdges;
299  m_periodicVerts = In.m_periodicVerts;
300  m_periodicFwdCopy = In.m_periodicFwdCopy;
301  m_periodicBwdCopy = In.m_periodicBwdCopy;
302  m_boundaryEdges = In.m_boundaryEdges;
303  m_leftAdjacentEdges = In.m_leftAdjacentEdges;
304 
305  // set elmt edges to point to robin bc edges if required
306  int i, cnt = 0;
307  Array<OneD, int> ElmtID, EdgeID;
308  GetBoundaryToElmtMap(ElmtID, EdgeID);
309 
310  for (i = 0; i < m_bndCondExpansions.num_elements(); ++i)
311  {
313 
314  int e;
315  locExpList = m_bndCondExpansions[i];
316 
317  for (e = 0; e < locExpList->GetExpSize(); ++e)
318  {
320  = (*m_exp)[ElmtID[cnt+e]]->
321  as<LocalRegions::Expansion2D>();
323  = locExpList->GetExp(e)->
324  as<LocalRegions::Expansion1D>();
326  = locExpList->GetExp(e)->
327  as<LocalRegions::Expansion> ();
328 
329  exp2d->SetEdgeExp(EdgeID[cnt+e], exp1d);
330  exp1d->SetAdjacentElementExp(EdgeID[cnt+e],
331  exp2d);
332  }
333  cnt += m_bndCondExpansions[i]->GetExpSize();
334  }
335 
337  }
338  }
339  }
340  }
void FindPeriodicEdges(const SpatialDomains::BoundaryConditions &bcs, const std::string &variable)
Determine the periodic edges and vertices for the given graph.
static ExpListSharedPtr NullExpListSharedPtr
Definition: ExpList.h:1395
void EvaluateBoundaryConditions(const NekDouble time=0.0, const std::string varName="", const NekDouble=NekConstants::kNekUnsetDouble, const NekDouble=NekConstants::kNekUnsetDouble)
Definition: ExpList.h:2091
std::vector< int > m_periodicFwdCopy
A vector indicating degress of freedom which need to be copied from forwards to backwards space in ca...
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
PeriodicMap m_periodicVerts
A map which identifies groups of periodic vertices.
void GetBoundaryToElmtMap(Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)
Definition: ExpList.h:2144
bool SameTypeOfBoundaryConditions(const DisContField2D &In)
LocTraceToTraceMapSharedPtr m_locTraceToTraceMap
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
std::set< int > m_boundaryEdges
A set storing the global IDs of any boundary edges.
boost::shared_ptr< ExpList > ExpListSharedPtr
Shared pointer to an ExpList object.
LibUtilities::SessionReaderSharedPtr m_session
Session.
Definition: ExpList.h:910
boost::shared_ptr< Expansion > ExpansionSharedPtr
Definition: Expansion.h:68
void SetUpDG(const std::string="DefaultVar")
Set up all DG member variables and maps.
ExpList2D()
Default constructor.
Definition: ExpList2D.cpp:69
void GenerateBoundaryConditionExpansion(const SpatialDomains::MeshGraphSharedPtr &graph2D, const SpatialDomains::BoundaryConditions &bcs, const std::string &variable, const bool DeclareCoeffPhysArrays=true)
This function discretises the boundary conditions by setting up a list of one-dimensional boundary ex...
boost::shared_ptr< Expansion1D > Expansion1DSharedPtr
Definition: Expansion1D.h:53
boost::shared_ptr< Expansion2D > Expansion2DSharedPtr
Definition: Expansion1D.h:49
Nektar::MultiRegions::DisContField2D::DisContField2D ( const DisContField2D In,
const bool  DeclareCoeffPhysArrays = true 
)

Definition at line 71 of file DisContField2D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), and m_trace.

74  : ExpList2D (In,DeclareCoeffPhysArrays),
75  m_bndCondExpansions (In.m_bndCondExpansions),
76  m_bndConditions (In.m_bndConditions),
77  m_globalBndMat (In.m_globalBndMat),
78  m_traceMap (In.m_traceMap),
79  m_locTraceToTraceMap (In.m_locTraceToTraceMap),
80  m_boundaryEdges (In.m_boundaryEdges),
81  m_periodicVerts (In.m_periodicVerts),
82  m_periodicEdges (In.m_periodicEdges),
83  m_periodicFwdCopy (In.m_periodicFwdCopy),
84  m_periodicBwdCopy (In.m_periodicBwdCopy),
85  m_leftAdjacentEdges (In.m_leftAdjacentEdges)
86  {
87  if (In.m_trace)
88  {
90  *boost::dynamic_pointer_cast<ExpList1D>(In.m_trace),
91  DeclareCoeffPhysArrays);
92  }
93  }
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
std::vector< int > m_periodicFwdCopy
A vector indicating degress of freedom which need to be copied from forwards to backwards space in ca...
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
PeriodicMap m_periodicVerts
A map which identifies groups of periodic vertices.
LocTraceToTraceMapSharedPtr m_locTraceToTraceMap
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
std::set< int > m_boundaryEdges
A set storing the global IDs of any boundary edges.
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
ExpList2D()
Default constructor.
Definition: ExpList2D.cpp:69
Nektar::MultiRegions::DisContField2D::~DisContField2D ( )
virtual

Default destructor.

Definition at line 345 of file DisContField2D.cpp.

346  {
347  }

Member Function Documentation

void Nektar::MultiRegions::DisContField2D::EvaluateHDGPostProcessing ( Array< OneD, NekDouble > &  outarray)

Evaluate HDG post-processing to increase polynomial order of solution.

This function takes the solution (assumed to be one order lower) in physical space, and postprocesses at the current polynomial order by solving the system:

\[ \begin{aligned} (\nabla w, \nabla u^*) &= (\nabla w, u), \\ \langle \nabla u^*, 1 \rangle &= \langle \nabla u, 1 \rangle \end{aligned} \]

where $ u $ corresponds with the current solution as stored inside m_coeffs.

Parameters
outarrayThe resulting field $ u^* $.

Definition at line 2085 of file DisContField2D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), ASSERTL0, Nektar::LibUtilities::eGaussLobattoLegendre, Nektar::LibUtilities::eGaussRadauMAlpha1Beta0, Nektar::StdRegions::eInvLaplacianWithUnityMean, Nektar::LibUtilities::eOrtho_A, Nektar::LibUtilities::eOrtho_B, Nektar::LibUtilities::eQuadrilateral, Nektar::LibUtilities::eTriangle, Nektar::eWrapper, Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::NekVector< DataType >::GetPtr(), Nektar::MultiRegions::ExpList::m_coeff_offset, Nektar::MultiRegions::ExpList::m_coeffs, Nektar::MultiRegions::ExpList::m_offset_elmt_id, m_trace, m_traceMap, Vmath::Vadd(), and Vmath::Vcopy().

2087  {
2088  int i,cnt,e,ncoeff_edge;
2089  Array<OneD, NekDouble> force, out_tmp, qrhs, qrhs1;
2090  Array<OneD, Array< OneD, LocalRegions::ExpansionSharedPtr> >
2091  &elmtToTrace = m_traceMap->GetElmtToTrace();
2092 
2093  StdRegions::Orientation edgedir;
2094 
2095  int eid,nq_elmt, nm_elmt;
2096  int LocBndCoeffs = m_traceMap->GetNumLocalBndCoeffs();
2097  Array<OneD, NekDouble> loc_lambda(LocBndCoeffs), edge_lambda;
2098  Array<OneD, NekDouble> tmp_coeffs;
2099  m_traceMap->GlobalToLocalBnd(m_trace->GetCoeffs(),loc_lambda);
2100 
2101  edge_lambda = loc_lambda;
2102 
2103  // Calculate Q using standard DG formulation.
2104  for(i = cnt = 0; i < GetExpSize(); ++i)
2105  {
2106  eid = m_offset_elmt_id[i];
2107 
2108  nq_elmt = (*m_exp)[eid]->GetTotPoints();
2109  nm_elmt = (*m_exp)[eid]->GetNcoeffs();
2110  qrhs = Array<OneD, NekDouble>(nq_elmt);
2111  qrhs1 = Array<OneD, NekDouble>(nq_elmt);
2112  force = Array<OneD, NekDouble>(2*nm_elmt);
2113  out_tmp = force + nm_elmt;
2115 
2116  int num_points0 = (*m_exp)[eid]->GetBasis(0)->GetNumPoints();
2117  int num_points1 = (*m_exp)[eid]->GetBasis(1)->GetNumPoints();
2118  int num_modes0 = (*m_exp)[eid]->GetBasis(0)->GetNumModes();
2119  int num_modes1 = (*m_exp)[eid]->GetBasis(1)->GetNumModes();
2120 
2121  // Probably a better way of setting up lambda than this. Note
2122  // cannot use PutCoeffsInToElmts since lambda space is mapped
2123  // during the solve.
2124  int nEdges = (*m_exp)[i]->GetNedges();
2125  Array<OneD, Array<OneD, NekDouble> > edgeCoeffs(nEdges);
2126 
2127  for(e = 0; e < (*m_exp)[eid]->GetNedges(); ++e)
2128  {
2129  edgedir = (*m_exp)[eid]->GetEorient(e);
2130  ncoeff_edge = elmtToTrace[eid][e]->GetNcoeffs();
2131  edgeCoeffs[e] = Array<OneD, NekDouble>(ncoeff_edge);
2132  Vmath::Vcopy(ncoeff_edge, edge_lambda, 1, edgeCoeffs[e], 1);
2133  elmtToTrace[eid][e]->SetCoeffsToOrientation(
2134  edgedir, edgeCoeffs[e], edgeCoeffs[e]);
2135  edge_lambda = edge_lambda + ncoeff_edge;
2136  }
2137 
2138  //creating orthogonal expansion (checking if we have quads or triangles)
2139  LibUtilities::ShapeType shape = (*m_exp)[eid]->DetShapeType();
2140  switch(shape)
2141  {
2143  {
2144  const LibUtilities::PointsKey PkeyQ1(num_points0,LibUtilities::eGaussLobattoLegendre);
2145  const LibUtilities::PointsKey PkeyQ2(num_points1,LibUtilities::eGaussLobattoLegendre);
2146  LibUtilities::BasisKey BkeyQ1(LibUtilities::eOrtho_A, num_modes0, PkeyQ1);
2147  LibUtilities::BasisKey BkeyQ2(LibUtilities::eOrtho_A, num_modes1, PkeyQ2);
2148  SpatialDomains::QuadGeomSharedPtr qGeom = boost::dynamic_pointer_cast<SpatialDomains::QuadGeom>((*m_exp)[eid]->GetGeom());
2149  ppExp = MemoryManager<LocalRegions::QuadExp>::AllocateSharedPtr(BkeyQ1, BkeyQ2, qGeom);
2150  }
2151  break;
2153  {
2154  const LibUtilities::PointsKey PkeyT1(num_points0,LibUtilities::eGaussLobattoLegendre);
2155  const LibUtilities::PointsKey PkeyT2(num_points1,LibUtilities::eGaussRadauMAlpha1Beta0);
2156  LibUtilities::BasisKey BkeyT1(LibUtilities::eOrtho_A, num_modes0, PkeyT1);
2157  LibUtilities::BasisKey BkeyT2(LibUtilities::eOrtho_B, num_modes1, PkeyT2);
2158  SpatialDomains::TriGeomSharedPtr tGeom = boost::dynamic_pointer_cast<SpatialDomains::TriGeom>((*m_exp)[eid]->GetGeom());
2159  ppExp = MemoryManager<LocalRegions::TriExp>::AllocateSharedPtr(BkeyT1, BkeyT2, tGeom);
2160  }
2161  break;
2162  default:
2163  ASSERTL0(false, "Wrong shape type, HDG postprocessing is not implemented");
2164  };
2165 
2166 
2167  //DGDeriv
2168  // (d/dx w, d/dx q_0)
2169  (*m_exp)[eid]->DGDeriv(
2170  0,tmp_coeffs = m_coeffs + m_coeff_offset[eid],
2171  elmtToTrace[eid], edgeCoeffs, out_tmp);
2172  (*m_exp)[eid]->BwdTrans(out_tmp,qrhs);
2173  //(*m_exp)[eid]->IProductWRTDerivBase(0,qrhs,force);
2174  ppExp->IProductWRTDerivBase(0,qrhs,force);
2175 
2176 
2177  // + (d/dy w, d/dy q_1)
2178  (*m_exp)[eid]->DGDeriv(
2179  1,tmp_coeffs = m_coeffs + m_coeff_offset[eid],
2180  elmtToTrace[eid], edgeCoeffs, out_tmp);
2181 
2182  (*m_exp)[eid]->BwdTrans(out_tmp,qrhs);
2183  //(*m_exp)[eid]->IProductWRTDerivBase(1,qrhs,out_tmp);
2184  ppExp->IProductWRTDerivBase(1,qrhs,out_tmp);
2185 
2186  Vmath::Vadd(nm_elmt,force,1,out_tmp,1,force,1);
2187 
2188  // determine force[0] = (1,u)
2189  (*m_exp)[eid]->BwdTrans(
2190  tmp_coeffs = m_coeffs + m_coeff_offset[eid],qrhs);
2191  force[0] = (*m_exp)[eid]->Integral(qrhs);
2192 
2193  // multiply by inverse Laplacian matrix
2194  // get matrix inverse
2195  LocalRegions::MatrixKey lapkey(StdRegions::eInvLaplacianWithUnityMean, ppExp->DetShapeType(), *ppExp);
2196  DNekScalMatSharedPtr lapsys = ppExp->GetLocMatrix(lapkey);
2197 
2198  NekVector<NekDouble> in (nm_elmt,force,eWrapper);
2199  NekVector<NekDouble> out(nm_elmt);
2200 
2201  out = (*lapsys)*in;
2202 
2203  // Transforming back to modified basis
2204  Array<OneD, NekDouble> work(nq_elmt);
2205  ppExp->BwdTrans(out.GetPtr(), work);
2206  (*m_exp)[eid]->FwdTrans(work, tmp_coeffs = outarray + m_coeff_offset[eid]);
2207  }
2208  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
boost::shared_ptr< QuadGeom > QuadGeomSharedPtr
Definition: QuadGeom.h:54
Array< OneD, NekDouble > m_coeffs
Concatenation of all local expansion coefficients.
Definition: ExpList.h:939
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
boost::shared_ptr< DNekScalMat > DNekScalMatSharedPtr
Gauss Radau pinned at x=-1, .
Definition: PointsType.h:57
Principle Orthogonal Functions .
Definition: BasisType.h:47
Array< OneD, int > m_coeff_offset
Offset of elemental data into the array m_coeffs.
Definition: ExpList.h:988
Array< OneD, int > m_offset_elmt_id
Array containing the element id m_offset_elmt_id[n] that the n^th consecutive block of data in m_coef...
Definition: ExpList.h:999
Principle Orthogonal Functions .
Definition: BasisType.h:46
boost::shared_ptr< Expansion > ExpansionSharedPtr
Definition: Expansion.h:68
boost::shared_ptr< TriGeom > TriGeomSharedPtr
Definition: TriGeom.h:58
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1047
1D Gauss-Lobatto-Legendre quadrature points
Definition: PointsType.h:50
void Vadd(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Add vector z = x+y.
Definition: Vmath.cpp:285
void Nektar::MultiRegions::DisContField2D::FindPeriodicEdges ( const SpatialDomains::BoundaryConditions bcs,
const std::string &  variable 
)
protected

Determine the periodic edges and vertices for the given graph.

Note that much of this routine is the same as the three-dimensional version, which therefore has much better documentation.

Parameters
bcsInformation about the boundary conditions.
variableSpecifies the field.
See also
DisContField3D::FindPeriodicFaces

Definition at line 706 of file DisContField2D.cpp.

References ASSERTL0, Nektar::StdRegions::eBackwards, Nektar::StdRegions::eForwards, Nektar::StdRegions::eNoOrientation, Nektar::SpatialDomains::ePeriodic, Nektar::MultiRegions::ExpList::GetBoundaryCondition(), Nektar::SpatialDomains::BoundaryConditions::GetBoundaryConditions(), Nektar::SpatialDomains::BoundaryConditions::GetBoundaryRegions(), Nektar::iterator, Nektar::MultiRegions::ExpList::m_graph, m_periodicEdges, m_periodicVerts, Nektar::MultiRegions::ExpList::m_session, Nektar::LibUtilities::ReduceSum, and Vmath::Vsum().

Referenced by DisContField2D().

709  {
711  = bcs.GetBoundaryRegions();
713  = bcs.GetBoundaryConditions();
715  = boost::dynamic_pointer_cast<
716  SpatialDomains::MeshGraph2D>(m_graph);
717  SpatialDomains::BoundaryRegionCollection::const_iterator it;
718 
720  m_session->GetComm()->GetRowComm();
722  m_session->GetCompositeOrdering();
723  LibUtilities::BndRegionOrdering bndRegOrder =
724  m_session->GetBndRegionOrdering();
726  m_graph->GetComposites();
727 
728  // Unique collection of pairs of periodic composites (i.e. if
729  // composites 1 and 2 are periodic then this map will contain either
730  // the pair (1,2) or (2,1) but not both).
731  map<int,int> perComps;
732  map<int,vector<int> > allVerts;
733  set<int> locVerts;
734  map<int,StdRegions::Orientation> allEdges;
735 
736  int region1ID, region2ID, i, j, k, cnt;
738 
739  // Set up a set of all local verts and edges.
740  for(i = 0; i < (*m_exp).size(); ++i)
741  {
742  for(j = 0; j < (*m_exp)[i]->GetNverts(); ++j)
743  {
744  int id = (*m_exp)[i]->GetGeom()->GetVid(j);
745  locVerts.insert(id);
746  }
747  }
748 
749  // Construct list of all periodic pairs local to this process.
750  for (it = bregions.begin(); it != bregions.end(); ++it)
751  {
752  locBCond = GetBoundaryCondition(
753  bconditions, it->first, variable);
754 
755  if (locBCond->GetBoundaryConditionType()
757  {
758  continue;
759  }
760 
761  // Identify periodic boundary region IDs.
762  region1ID = it->first;
763  region2ID = boost::static_pointer_cast<
764  SpatialDomains::PeriodicBoundaryCondition>(
765  locBCond)->m_connectedBoundaryRegion;
766 
767  // From this identify composites. Note that in serial this will
768  // be an empty map.
769  int cId1, cId2;
770  if (vComm->GetSize() == 1)
771  {
772  cId1 = it->second->begin()->first;
773  cId2 = bregions.find(region2ID)->second->begin()->first;
774  }
775  else
776  {
777  cId1 = bndRegOrder.find(region1ID)->second[0];
778  cId2 = bndRegOrder.find(region2ID)->second[0];
779  }
780 
781  ASSERTL0(it->second->size() == 1,
782  "Boundary region "+boost::lexical_cast<string>(
783  region1ID)+" should only contain 1 composite.");
784 
785  // Construct set containing all periodic edges on this process
786  SpatialDomains::Composite c = it->second->begin()->second;
787 
788  vector<unsigned int> tmpOrder;
789 
790  for (i = 0; i < c->size(); ++i)
791  {
793  boost::dynamic_pointer_cast<
794  SpatialDomains::SegGeom>((*c)[i]);
795  ASSERTL0(segGeom, "Unable to cast to shared ptr");
796 
798  graph2D->GetElementsFromEdge(segGeom);
799  ASSERTL0(elmt->size() == 1,
800  "The periodic boundaries belong to "
801  "more than one element of the mesh");
802 
804  boost::dynamic_pointer_cast<SpatialDomains::Geometry2D>(
805  (*elmt)[0]->m_Element);
806 
807  allEdges[(*c)[i]->GetGlobalID()] =
808  geom->GetEorient((*elmt)[0]->m_EdgeIndx);
809 
810  // In serial mesh partitioning will not have occurred so
811  // need to fill composite ordering map manually.
812  if (vComm->GetSize() == 1)
813  {
814  tmpOrder.push_back((*c)[i]->GetGlobalID());
815  }
816 
817  vector<int> vertList(2);
818  vertList[0] = segGeom->GetVid(0);
819  vertList[1] = segGeom->GetVid(1);
820  allVerts[(*c)[i]->GetGlobalID()] = vertList;
821  }
822 
823  if (vComm->GetSize() == 1)
824  {
825  compOrder[it->second->begin()->first] = tmpOrder;
826  }
827 
828  // See if we already have either region1 or region2 stored in
829  // perComps map.
830  if (perComps.count(cId1) == 0)
831  {
832  if (perComps.count(cId2) == 0)
833  {
834  perComps[cId1] = cId2;
835  }
836  else
837  {
838  std::stringstream ss;
839  ss << "Boundary region " << cId2 << " should be "
840  << "periodic with " << perComps[cId2] << " but "
841  << "found " << cId1 << " instead!";
842  ASSERTL0(perComps[cId2] == cId1, ss.str());
843  }
844  }
845  else
846  {
847  std::stringstream ss;
848  ss << "Boundary region " << cId1 << " should be "
849  << "periodic with " << perComps[cId1] << " but "
850  << "found " << cId2 << " instead!";
851  ASSERTL0(perComps[cId1] == cId1, ss.str());
852  }
853  }
854 
855  // Process local edge list to obtain relative edge orientations.
856  int n = vComm->GetSize();
857  int p = vComm->GetRank();
858  int totEdges;
859  Array<OneD, int> edgecounts(n,0);
860  Array<OneD, int> edgeoffset(n,0);
861  Array<OneD, int> vertoffset(n,0);
862 
863  edgecounts[p] = allEdges.size();
864  vComm->AllReduce(edgecounts, LibUtilities::ReduceSum);
865 
866  edgeoffset[0] = 0;
867  for (i = 1; i < n; ++i)
868  {
869  edgeoffset[i] = edgeoffset[i-1] + edgecounts[i-1];
870  }
871 
872  totEdges = Vmath::Vsum(n, edgecounts, 1);
873  Array<OneD, int> edgeIds (totEdges, 0);
874  Array<OneD, int> edgeOrient(totEdges, 0);
875  Array<OneD, int> edgeVerts (totEdges, 0);
876 
878 
879  for (i = 0, sIt = allEdges.begin(); sIt != allEdges.end(); ++sIt)
880  {
881  edgeIds [edgeoffset[p] + i ] = sIt->first;
882  edgeOrient[edgeoffset[p] + i ] = sIt->second;
883  edgeVerts [edgeoffset[p] + i++] = allVerts[sIt->first].size();
884  }
885 
886  vComm->AllReduce(edgeIds, LibUtilities::ReduceSum);
887  vComm->AllReduce(edgeOrient, LibUtilities::ReduceSum);
888  vComm->AllReduce(edgeVerts, LibUtilities::ReduceSum);
889 
890  // Calculate number of vertices on each processor.
891  Array<OneD, int> procVerts(n,0);
892  int nTotVerts;
893 
894  // Note if there are no periodic edges at all calling Vsum will
895  // cause a segfault.
896  if (totEdges > 0)
897  {
898  nTotVerts = Vmath::Vsum(totEdges, edgeVerts, 1);
899  }
900  else
901  {
902  nTotVerts = 0;
903  }
904 
905  for (i = 0; i < n; ++i)
906  {
907  if (edgecounts[i] > 0)
908  {
909  procVerts[i] = Vmath::Vsum(
910  edgecounts[i], edgeVerts + edgeoffset[i], 1);
911  }
912  else
913  {
914  procVerts[i] = 0;
915  }
916  }
917  vertoffset[0] = 0;
918 
919  for (i = 1; i < n; ++i)
920  {
921  vertoffset[i] = vertoffset[i-1] + procVerts[i-1];
922  }
923 
924  Array<OneD, int> vertIds(nTotVerts, 0);
925  for (i = 0, sIt = allEdges.begin(); sIt != allEdges.end(); ++sIt)
926  {
927  for (j = 0; j < allVerts[sIt->first].size(); ++j)
928  {
929  vertIds[vertoffset[p] + i++] = allVerts[sIt->first][j];
930  }
931  }
932 
933  vComm->AllReduce(vertIds, LibUtilities::ReduceSum);
934 
935  // For simplicity's sake create a map of edge id -> orientation.
936  map<int, StdRegions::Orientation> orientMap;
937  map<int, vector<int> > vertMap;
938 
939  for (cnt = i = 0; i < totEdges; ++i)
940  {
941  ASSERTL0(orientMap.count(edgeIds[i]) == 0,
942  "Already found edge in orientation map!");
943  orientMap[edgeIds[i]] = (StdRegions::Orientation)edgeOrient[i];
944 
945  vector<int> verts(edgeVerts[i]);
946 
947  for (j = 0; j < edgeVerts[i]; ++j)
948  {
949  verts[j] = vertIds[cnt++];
950  }
951  vertMap[edgeIds[i]] = verts;
952  }
953 
954  // Go through list of composites and figure out which edges are
955  // parallel from original ordering in session file. This includes
956  // composites which are not necessarily on this process.
957  map<int,int>::iterator cIt, pIt;
958  map<int,int>::const_iterator oIt;
959 
960  map<int,int> allCompPairs;
961 
962  // Store temporary map of periodic vertices which will hold all
963  // periodic vertices on the entire mesh so that doubly periodic
964  // vertices can be counted properly across partitions. Local
965  // vertices are copied into m_periodicVerts at the end of the
966  // function.
967  PeriodicMap periodicVerts;
968 
969  for (cIt = perComps.begin(); cIt != perComps.end(); ++cIt)
970  {
972  const int id1 = cIt->first;
973  const int id2 = cIt->second;
974  std::string id1s = boost::lexical_cast<string>(id1);
975  std::string id2s = boost::lexical_cast<string>(id2);
976 
977  if (compMap.count(id1) > 0)
978  {
979  c[0] = compMap[id1];
980  }
981 
982  if (compMap.count(id2) > 0)
983  {
984  c[1] = compMap[id2];
985  }
986 
987  ASSERTL0(c[0] || c[1],
988  "Both composites not found on this process!");
989 
990  // Loop over composite ordering to construct list of all
991  // periodic edges regardless of whether they are on this
992  // process.
993  map<int,int> compPairs;
994 
995  ASSERTL0(compOrder.count(id1) > 0,
996  "Unable to find composite "+id1s+" in order map.");
997  ASSERTL0(compOrder.count(id2) > 0,
998  "Unable to find composite "+id2s+" in order map.");
999  ASSERTL0(compOrder[id1].size() == compOrder[id2].size(),
1000  "Periodic composites "+id1s+" and "+id2s+
1001  " should have the same number of elements.");
1002  ASSERTL0(compOrder[id1].size() > 0,
1003  "Periodic composites "+id1s+" and "+id2s+
1004  " are empty!");
1005 
1006  // TODO: Add more checks.
1007  for (i = 0; i < compOrder[id1].size(); ++i)
1008  {
1009  int eId1 = compOrder[id1][i];
1010  int eId2 = compOrder[id2][i];
1011 
1012  ASSERTL0(compPairs.count(eId1) == 0,
1013  "Already paired.");
1014 
1015  if (compPairs.count(eId2) != 0)
1016  {
1017  ASSERTL0(compPairs[eId2] == eId1, "Pairing incorrect");
1018  }
1019  compPairs[eId1] = eId2;
1020  }
1021 
1022  // Construct set of all edges that we have locally on this
1023  // processor.
1024  set<int> locEdges;
1025  set<int>::iterator sIt;
1026  for (i = 0; i < 2; ++i)
1027  {
1028  if (!c[i])
1029  {
1030  continue;
1031  }
1032 
1033  if (c[i]->size() > 0)
1034  {
1035  for (j = 0; j < c[i]->size(); ++j)
1036  {
1037  locEdges.insert(c[i]->at(j)->GetGlobalID());
1038  }
1039  }
1040  }
1041 
1042  // Loop over all edges in the geometry composite.
1043  for (pIt = compPairs.begin(); pIt != compPairs.end(); ++pIt)
1044  {
1045  int ids [2] = {pIt->first, pIt->second};
1046  bool local[2] = {locEdges.count(pIt->first) > 0,
1047  locEdges.count(pIt->second) > 0};
1048 
1049  ASSERTL0(orientMap.count(ids[0]) > 0 &&
1050  orientMap.count(ids[1]) > 0,
1051  "Unable to find edge in orientation map.");
1052 
1053  allCompPairs[pIt->first ] = pIt->second;
1054  allCompPairs[pIt->second] = pIt->first;
1055 
1056  for (i = 0; i < 2; ++i)
1057  {
1058  if (!local[i])
1059  {
1060  continue;
1061  }
1062 
1063  int other = (i+1) % 2;
1064 
1066  orientMap[ids[i]] == orientMap[ids[other]] ?
1069 
1070  PeriodicEntity ent(ids [other], o,
1071  local[other]);
1072  m_periodicEdges[ids[i]].push_back(ent);
1073  }
1074 
1075  for (i = 0; i < 2; ++i)
1076  {
1077  int other = (i+1) % 2;
1078 
1080  orientMap[ids[i]] == orientMap[ids[other]] ?
1083 
1084  // Determine periodic vertices.
1085  vector<int> perVerts1 = vertMap[ids[i]];
1086  vector<int> perVerts2 = vertMap[ids[other]];
1087 
1088  map<int, pair<int, bool> > tmpMap;
1089  map<int, pair<int, bool> >::iterator mIt;
1090  if (o == StdRegions::eForwards)
1091  {
1092  tmpMap[perVerts1[0]] = make_pair(
1093  perVerts2[0], locVerts.count(perVerts2[0]) > 0);
1094  tmpMap[perVerts1[1]] = make_pair(
1095  perVerts2[1], locVerts.count(perVerts2[1]) > 0);
1096  }
1097  else
1098  {
1099  tmpMap[perVerts1[0]] = make_pair(
1100  perVerts2[1], locVerts.count(perVerts2[1]) > 0);
1101  tmpMap[perVerts1[1]] = make_pair(
1102  perVerts2[0], locVerts.count(perVerts2[0]) > 0);
1103  }
1104 
1105  for (mIt = tmpMap.begin(); mIt != tmpMap.end(); ++mIt)
1106  {
1107  // See if this vertex has been recorded already.
1108  PeriodicEntity ent2(mIt->second.first,
1110  mIt->second.second);
1111  PeriodicMap::iterator perIt = periodicVerts.find(
1112  mIt->first);
1113 
1114  if (perIt == periodicVerts.end())
1115  {
1116  periodicVerts[mIt->first].push_back(ent2);
1117  perIt = periodicVerts.find(mIt->first);
1118  }
1119  else
1120  {
1121  bool doAdd = true;
1122  for (j = 0; j < perIt->second.size(); ++j)
1123  {
1124  if (perIt->second[j].id == mIt->second.first)
1125  {
1126  doAdd = false;
1127  break;
1128  }
1129  }
1130 
1131  if (doAdd)
1132  {
1133  perIt->second.push_back(ent2);
1134  }
1135  }
1136  }
1137  }
1138  }
1139  }
1140 
1141  Array<OneD, int> pairSizes(n, 0);
1142  pairSizes[p] = allCompPairs.size();
1143  vComm->AllReduce(pairSizes, LibUtilities::ReduceSum);
1144 
1145  int totPairSizes = Vmath::Vsum(n, pairSizes, 1);
1146 
1147  Array<OneD, int> pairOffsets(n, 0);
1148  pairOffsets[0] = 0;
1149 
1150  for (i = 1; i < n; ++i)
1151  {
1152  pairOffsets[i] = pairOffsets[i-1] + pairSizes[i-1];
1153  }
1154 
1155  Array<OneD, int> first (totPairSizes, 0);
1156  Array<OneD, int> second(totPairSizes, 0);
1157 
1158  cnt = pairOffsets[p];
1159 
1160  for (pIt = allCompPairs.begin(); pIt != allCompPairs.end(); ++pIt)
1161  {
1162  first [cnt ] = pIt->first;
1163  second[cnt++] = pIt->second;
1164  }
1165 
1166  vComm->AllReduce(first, LibUtilities::ReduceSum);
1167  vComm->AllReduce(second, LibUtilities::ReduceSum);
1168 
1169  allCompPairs.clear();
1170 
1171  for(cnt = 0; cnt < totPairSizes; ++cnt)
1172  {
1173  allCompPairs[first[cnt]] = second[cnt];
1174  }
1175 
1176  // Search for periodic vertices and edges which are not in
1177  // a periodic composite but lie in this process. First, loop
1178  // over all information we have from other processors.
1179  for (cnt = i = 0; i < totEdges; ++i)
1180  {
1181  int edgeId = edgeIds[i];
1182 
1183  ASSERTL0(allCompPairs.count(edgeId) > 0,
1184  "Unable to find matching periodic edge.");
1185 
1186  int perEdgeId = allCompPairs[edgeId];
1187 
1188  for (j = 0; j < edgeVerts[i]; ++j, ++cnt)
1189  {
1190  int vId = vertIds[cnt];
1191 
1192  PeriodicMap::iterator perId = periodicVerts.find(vId);
1193 
1194  if (perId == periodicVerts.end())
1195  {
1196  // This vertex is not included in the map. Figure
1197  // out which vertex it is supposed to be periodic
1198  // with. perEdgeId is the edge ID which is periodic with
1199  // edgeId. The logic is much the same as the loop above.
1200  int perVertexId =
1201  orientMap[edgeId] == orientMap[perEdgeId] ?
1202  vertMap[perEdgeId][(j+1)%2] : vertMap[perEdgeId][j];
1203 
1204  PeriodicEntity ent(perVertexId,
1206  locVerts.count(perVertexId) > 0);
1207 
1208  periodicVerts[vId].push_back(ent);
1209  }
1210  }
1211  }
1212 
1213  // Loop over all periodic vertices to complete connectivity
1214  // information.
1215  PeriodicMap::iterator perIt, perIt2;
1216  for (perIt = periodicVerts.begin();
1217  perIt != periodicVerts.end(); ++perIt)
1218  {
1219  // Loop over associated vertices.
1220  for (i = 0; i < perIt->second.size(); ++i)
1221  {
1222  perIt2 = periodicVerts.find(perIt->second[i].id);
1223  ASSERTL0(perIt2 != periodicVerts.end(),
1224  "Couldn't find periodic vertex.");
1225 
1226  for (j = 0; j < perIt2->second.size(); ++j)
1227  {
1228  if (perIt2->second[j].id == perIt->first)
1229  {
1230  continue;
1231  }
1232 
1233  bool doAdd = true;
1234  for (k = 0; k < perIt->second.size(); ++k)
1235  {
1236  if (perIt2->second[j].id == perIt->second[k].id)
1237  {
1238  doAdd = false;
1239  break;
1240  }
1241  }
1242 
1243  if (doAdd)
1244  {
1245  perIt->second.push_back(perIt2->second[j]);
1246  }
1247  }
1248  }
1249  }
1250 
1251  // Do one final loop over periodic vertices to remove non-local
1252  // vertices from map.
1253  for (perIt = periodicVerts.begin();
1254  perIt != periodicVerts.end(); ++perIt)
1255  {
1256  if (locVerts.count(perIt->first) > 0)
1257  {
1258  m_periodicVerts.insert(*perIt);
1259  }
1260  }
1261  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
std::map< int, std::vector< unsigned int > > BndRegionOrdering
Definition: MeshPartition.h:54
PeriodicMap m_periodicVerts
A map which identifies groups of periodic vertices.
std::map< int, std::vector< unsigned int > > CompositeOrdering
Definition: MeshPartition.h:53
boost::shared_ptr< MeshGraph2D > MeshGraph2DSharedPtr
Definition: MeshGraph2D.h:238
boost::shared_ptr< Comm > CommSharedPtr
Pointer to a Communicator object.
Definition: Comm.h:53
boost::shared_ptr< SegGeom > SegGeomSharedPtr
Definition: Geometry2D.h:60
std::map< int, BoundaryRegionShPtr > BoundaryRegionCollection
Definition: Conditions.h:206
SpatialDomains::MeshGraphSharedPtr m_graph
Mesh associated with this expansion list.
Definition: ExpList.h:913
LibUtilities::SessionReaderSharedPtr m_session
Session.
Definition: ExpList.h:910
std::map< int, BoundaryConditionMapShPtr > BoundaryConditionCollection
Definition: Conditions.h:215
boost::shared_ptr< GeometryVector > Composite
Definition: MeshGraph.h:114
std::map< int, std::vector< PeriodicEntity > > PeriodicMap
std::map< int, Composite > CompositeMap
Definition: MeshGraph.h:115
boost::shared_ptr< Geometry2D > Geometry2DSharedPtr
Definition: Geometry2D.h:59
boost::shared_ptr< ElementEdgeVector > ElementEdgeVectorSharedPtr
Definition: MeshGraph.h:134
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
static SpatialDomains::BoundaryConditionShPtr GetBoundaryCondition(const SpatialDomains::BoundaryConditionCollection &collection, unsigned int index, const std::string &variable)
Definition: ExpList.cpp:2860
boost::shared_ptr< BoundaryConditionBase > BoundaryConditionShPtr
Definition: Conditions.h:208
T Vsum(int n, const T *x, const int incx)
Subtract return sum(x)
Definition: Vmath.cpp:723
struct Nektar::MultiRegions::_PeriodicEntity PeriodicEntity
void Nektar::MultiRegions::DisContField2D::GenerateBoundaryConditionExpansion ( const SpatialDomains::MeshGraphSharedPtr graph2D,
const SpatialDomains::BoundaryConditions bcs,
const std::string &  variable,
const bool  DeclareCoeffPhysArrays = true 
)
protected

This function discretises the boundary conditions by setting up a list of one-dimensional boundary expansions.

According to their boundary region, the separate segmental boundary expansions are bundled together in an object of the class MultiRegions::ExpList1D.

Parameters
graph2DA mesh, containing information about the domain and the spectral/hp element expansion.
bcsAn entity containing information about the boundaries and boundary conditions.
variableAn optional parameter to indicate for which variable the boundary conditions should be discretised.

Definition at line 629 of file DisContField2D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::SpatialDomains::eDirichlet, Nektar::SpatialDomains::ePeriodic, Nektar::MultiRegions::ExpList::GetBoundaryCondition(), Nektar::SpatialDomains::BoundaryConditions::GetBoundaryConditions(), Nektar::SpatialDomains::BoundaryConditions::GetBoundaryRegions(), m_bndCondExpansions, m_bndConditions, Nektar::MultiRegions::ExpList::m_session, and Nektar::MultiRegions::ExpList::SetUpPhysNormals().

Referenced by DisContField2D().

634  {
635  int cnt = 0;
639  bcs.GetBoundaryRegions();
640  const SpatialDomains::BoundaryConditionCollection &bconditions =
641  bcs.GetBoundaryConditions();
642  SpatialDomains::BoundaryRegionCollection::const_iterator it;
643 
644  // count the number of non-periodic boundary regions
645  for (it = bregions.begin(); it != bregions.end(); ++it)
646  {
647  bc = GetBoundaryCondition(bconditions, it->first, variable);
648 
649  if (bc->GetBoundaryConditionType() != SpatialDomains::ePeriodic)
650  {
651  cnt++;
652  }
653  }
654 
656  Array<OneD, MultiRegions::ExpListSharedPtr>(cnt);
657  m_bndConditions =
658  Array<OneD, SpatialDomains::BoundaryConditionShPtr>(cnt);
659 
660  cnt = 0;
661 
662  // list non-periodic boundaries
663  for (it = bregions.begin(); it != bregions.end(); ++it)
664  {
665  bc = GetBoundaryCondition(bconditions, it->first, variable);
666 
667  if (bc->GetBoundaryConditionType() != SpatialDomains::ePeriodic)
668  {
670  ::AllocateSharedPtr(m_session, *(it->second), graph2D,
671  DeclareCoeffPhysArrays, variable);
672 
673  m_bndCondExpansions[cnt] = locExpList;
674  m_bndConditions[cnt] = bc;
675 
676 
677  std::string type = m_bndConditions[cnt]->GetUserDefined();
678 
679  // Set up normals on non-Dirichlet boundary
680  // conditions. Second two conditions ideally
681  // should be in local solver setup (when made into factory)
682  if((bc->GetBoundaryConditionType() !=
684  boost::iequals(type,"I") ||
685  boost::iequals(type,"CalcBC"))
686  {
688  }
689 
690  cnt++;
691  }
692  }
693  }
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
boost::shared_ptr< ExpList1D > ExpList1DSharedPtr
Shared pointer to an ExpList1D object.
Definition: ExpList1D.h:50
std::map< int, BoundaryRegionShPtr > BoundaryRegionCollection
Definition: Conditions.h:206
LibUtilities::SessionReaderSharedPtr m_session
Session.
Definition: ExpList.h:910
std::map< int, BoundaryConditionMapShPtr > BoundaryConditionCollection
Definition: Conditions.h:215
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
static SpatialDomains::BoundaryConditionShPtr GetBoundaryCondition(const SpatialDomains::BoundaryConditionCollection &collection, unsigned int index, const std::string &variable)
Definition: ExpList.cpp:2860
boost::shared_ptr< BoundaryConditionBase > BoundaryConditionShPtr
Definition: Conditions.h:208
const Array<OneD, const LibUtilities::BasisSharedPtr>& Nektar::MultiRegions::DisContField2D::GetBase ( ) const
inlineprotected

This function gets the shared point to basis.

Returns
returns the shared pointer to the bases

Definition at line 106 of file DisContField2D.h.

107  {
108  return(m_base);
109  }
Array< OneD, LibUtilities::BasisSharedPtr > m_base
LibUtilities::BasisType Nektar::MultiRegions::DisContField2D::GetBasisType ( const int  dir) const
inlineprotected

This function returns the type of basis used in the dir direction.

The different types of bases implemented in the code are defined in the LibUtilities::BasisType enumeration list. As a result, the function will return one of the types of this enumeration list.

Parameters
dirthe direction
Returns
returns the type of basis used in the dir direction

Definition at line 121 of file DisContField2D.h.

References ASSERTL1.

122  {
123  ASSERTL1(dir < m_base.num_elements(), "dir is larger than m_numbases");
124  return(m_base[dir]->GetBasisType());
125  }
LibUtilities::BasisType GetBasisType(const int dir) const
This function returns the type of basis used in the dir direction.
Array< OneD, LibUtilities::BasisSharedPtr > m_base
#define ASSERTL1(condition, msg)
Assert Level 1 – Debugging which is used whether in FULLDEBUG or DEBUG compilation mode...
Definition: ErrorUtil.hpp:191
GlobalLinSysSharedPtr Nektar::MultiRegions::DisContField2D::GetGlobalBndLinSys ( const GlobalLinSysKey mkey)

Definition at line 349 of file DisContField2D.cpp.

References ASSERTL0, ASSERTL1, Nektar::StdRegions::eHybridDGHelmBndLam, Nektar::MultiRegions::ExpList::GenGlobalBndLinSys(), Nektar::MultiRegions::GlobalLinSysKey::GetGlobalSysSolnType(), Nektar::MultiRegions::GlobalMatrixKey::GetMatrixType(), Nektar::iterator, m_globalBndMat, and m_traceMap.

Referenced by v_HelmSolve().

351  {
352  ASSERTL0(mkey.GetMatrixType() == StdRegions::eHybridDGHelmBndLam,
353  "Routine currently only tested for HybridDGHelmholtz");
354  ASSERTL1(mkey.GetGlobalSysSolnType() ==
355  m_traceMap->GetGlobalSysSolnType(),
356  "The local to global map is not set up for the requested "
357  "solution type");
358 
359  GlobalLinSysSharedPtr glo_matrix;
360  GlobalLinSysMap::iterator matrixIter = m_globalBndMat->find(mkey);
361 
362  if(matrixIter == m_globalBndMat->end())
363  {
364  glo_matrix = GenGlobalBndLinSys(mkey,m_traceMap);
365  (*m_globalBndMat)[mkey] = glo_matrix;
366  }
367  else
368  {
369  glo_matrix = matrixIter->second;
370  }
371 
372  return glo_matrix;
373  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
boost::shared_ptr< GlobalLinSys > GenGlobalBndLinSys(const GlobalLinSysKey &mkey, const AssemblyMapSharedPtr &locToGloMap)
Generate a GlobalLinSys from information provided by the key "mkey" and the mapping provided in LocTo...
Definition: ExpList.cpp:1194
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
boost::shared_ptr< GlobalLinSys > GlobalLinSysSharedPtr
Pointer to a GlobalLinSys object.
Definition: GlobalLinSys.h:52
#define ASSERTL1(condition, msg)
Assert Level 1 – Debugging which is used whether in FULLDEBUG or DEBUG compilation mode...
Definition: ErrorUtil.hpp:191
bool Nektar::MultiRegions::DisContField2D::IsLeftAdjacentEdge ( const int  n,
const int  e 
)
protected

Definition at line 1263 of file DisContField2D.cpp.

References ASSERTL2, Nektar::iterator, m_boundaryEdges, Nektar::MultiRegions::ExpList::m_exp, m_periodicEdges, m_trace, and m_traceMap.

Referenced by SetUpDG(), and v_AddFwdBwdTraceIntegral().

1264  {
1265  set<int>::iterator it;
1267  m_traceMap->GetElmtToTrace()[n][e]->
1268  as<LocalRegions::Expansion1D>();
1269 
1270 
1271  bool fwd = true;
1272  if (traceEl->GetLeftAdjacentElementEdge () == -1 ||
1273  traceEl->GetRightAdjacentElementEdge() == -1)
1274  {
1275  // Boundary edge (1 connected element). Do nothing in
1276  // serial.
1277  it = m_boundaryEdges.find(traceEl->GetElmtId());
1278 
1279  // If the edge does not have a boundary condition set on
1280  // it, then assume it is a partition edge.
1281  if (it == m_boundaryEdges.end())
1282  {
1283  int traceGeomId = traceEl->GetGeom1D()->GetGlobalID();
1285  traceGeomId);
1286 
1287  if (pIt != m_periodicEdges.end() && !pIt->second[0].isLocal)
1288  {
1289  fwd = traceGeomId == min(traceGeomId,pIt->second[0].id);
1290  }
1291  else
1292  {
1293  int offset = m_trace->GetPhys_Offset(traceEl->GetElmtId());
1294 
1295  fwd = m_traceMap->
1296  GetTraceToUniversalMapUnique(offset) >= 0;
1297  }
1298  }
1299  }
1300  else if (traceEl->GetLeftAdjacentElementEdge () != -1 &&
1301  traceEl->GetRightAdjacentElementEdge() != -1)
1302  {
1303  // Non-boundary edge (2 connected elements).
1304  fwd = dynamic_cast<Nektar::StdRegions::StdExpansion*>
1305  (traceEl->GetLeftAdjacentElementExp().get()) ==
1306  (*m_exp)[n].get();
1307  }
1308  else
1309  {
1310  ASSERTL2(false, "Unconnected trace element!");
1311  }
1312 
1313  return fwd;
1314  }
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
The base class for all shapes.
Definition: StdExpansion.h:69
boost::shared_ptr< LocalRegions::ExpansionVector > m_exp
The list of local expansions.
Definition: ExpList.h:977
std::set< int > m_boundaryEdges
A set storing the global IDs of any boundary edges.
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
#define ASSERTL2(condition, msg)
Assert Level 2 – Debugging which is used FULLDEBUG compilation mode. This level assert is designed t...
Definition: ErrorUtil.hpp:213
boost::shared_ptr< Expansion1D > Expansion1DSharedPtr
Definition: Expansion1D.h:53
NekDouble Nektar::MultiRegions::DisContField2D::L2_DGDeriv ( const int  dir,
const Array< OneD, const NekDouble > &  soln 
)

Calculate the $ L^2 $ error of the $ Q_{\rm dir} $ derivative using the consistent DG evaluation of $ Q_{\rm dir} $.

The solution provided is of the primative variation at the quadrature points and the derivative is compared to the discrete derivative at these points, which is likely to be undesirable unless using a much higher number of quadrature points than the polynomial order used to evaluate $ Q_{\rm dir} $.

Definition at line 1800 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::BwdTrans(), Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::MultiRegions::ExpList::L2(), Nektar::MultiRegions::ExpList::m_coeff_offset, Nektar::MultiRegions::ExpList::m_coeffs, Nektar::MultiRegions::ExpList::m_ncoeffs, Nektar::MultiRegions::ExpList::m_npoints, Nektar::MultiRegions::ExpList::m_offset_elmt_id, Nektar::MultiRegions::ExpList::m_phys, m_trace, m_traceMap, Vmath::Vcopy(), and Vmath::Vsub().

1803  {
1804  int i,e,ncoeff_edge;
1805  Array<OneD, const NekDouble> tmp_coeffs;
1806  Array<OneD, NekDouble> out_d(m_ncoeffs), out_tmp;
1807 
1808  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
1809  &elmtToTrace = m_traceMap->GetElmtToTrace();
1810 
1811  StdRegions::Orientation edgedir;
1812 
1813  int eid,cnt;
1814  int LocBndCoeffs = m_traceMap->GetNumLocalBndCoeffs();
1815  Array<OneD, NekDouble> loc_lambda(LocBndCoeffs), edge_lambda;
1816  m_traceMap->GlobalToLocalBnd(m_trace->GetCoeffs(),loc_lambda);
1817 
1818  edge_lambda = loc_lambda;
1819 
1820  // Calculate Q using standard DG formulation.
1821  for(i = cnt = 0; i < GetExpSize(); ++i)
1822  {
1823  eid = m_offset_elmt_id[i];
1824 
1825  // Probably a better way of setting up lambda than this.
1826  // Note cannot use PutCoeffsInToElmts since lambda space
1827  // is mapped during the solve.
1828  int nEdges = (*m_exp)[i]->GetNedges();
1829  Array<OneD, Array<OneD, NekDouble> > edgeCoeffs(nEdges);
1830 
1831  for(e = 0; e < nEdges; ++e)
1832  {
1833  edgedir = (*m_exp)[eid]->GetEorient(e);
1834  ncoeff_edge = elmtToTrace[eid][e]->GetNcoeffs();
1835  edgeCoeffs[e] = Array<OneD, NekDouble>(ncoeff_edge);
1836  Vmath::Vcopy(ncoeff_edge, edge_lambda, 1, edgeCoeffs[e], 1);
1837  elmtToTrace[eid][e]->SetCoeffsToOrientation(
1838  edgedir, edgeCoeffs[e], edgeCoeffs[e]);
1839  edge_lambda = edge_lambda + ncoeff_edge;
1840  }
1841 
1842  (*m_exp)[eid]->DGDeriv(dir,
1843  tmp_coeffs=m_coeffs+m_coeff_offset[eid],
1844  elmtToTrace[eid],
1845  edgeCoeffs,
1846  out_tmp = out_d+cnt);
1847  cnt += (*m_exp)[eid]->GetNcoeffs();
1848  }
1849 
1850  BwdTrans(out_d,m_phys);
1851  Vmath::Vsub(m_npoints,m_phys,1,soln,1,m_phys,1);
1852  return L2(m_phys);
1853  }
void BwdTrans(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
Definition: ExpList.h:1609
Array< OneD, NekDouble > m_phys
The global expansion evaluated at the quadrature points.
Definition: ExpList.h:956
Array< OneD, NekDouble > m_coeffs
Concatenation of all local expansion coefficients.
Definition: ExpList.h:939
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
Array< OneD, int > m_coeff_offset
Offset of elemental data into the array m_coeffs.
Definition: ExpList.h:988
int m_ncoeffs
The total number of local degrees of freedom. m_ncoeffs .
Definition: ExpList.h:917
Array< OneD, int > m_offset_elmt_id
Array containing the element id m_offset_elmt_id[n] that the n^th consecutive block of data in m_coef...
Definition: ExpList.h:999
void Vsub(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Subtract vector z = x-y.
Definition: Vmath.cpp:329
NekDouble L2(const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
This function calculates the error with respect to soln of the global spectral/hp element approximat...
Definition: ExpList.h:477
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1047
bool Nektar::MultiRegions::DisContField2D::SameTypeOfBoundaryConditions ( const DisContField2D In)
protected

For each boundary region, checks that the types and number of boundary expansions in that region match.

Parameters
InContField2D to compare with.
Returns
True if boundary conditions match.

Definition at line 584 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::GetExpSize(), m_bndCondExpansions, m_bndConditions, Nektar::MultiRegions::ExpList::m_comm, and Nektar::LibUtilities::ReduceMin.

Referenced by Nektar::MultiRegions::ContField2D::ContField2D(), and DisContField2D().

586  {
587  int i;
588  bool returnval = true;
589 
590  for(i = 0; i < m_bndConditions.num_elements(); ++i)
591  {
592 
593  // check to see if boundary condition type is the same
594  // and there are the same number of boundary
595  // conditions in the boundary definition.
596  if((m_bndConditions[i]->GetBoundaryConditionType()
597  != In.m_bndConditions[i]->GetBoundaryConditionType())||
599  != In.m_bndCondExpansions[i]->GetExpSize()))
600  {
601  returnval = false;
602  break;
603  }
604  }
605 
606  // Compare with all other processes. Return true only if all
607  // processes report having the same boundary conditions.
608  int vSame = (returnval?1:0);
609  m_comm->GetRowComm()->AllReduce(vSame, LibUtilities::ReduceMin);
610 
611  return (vSame == 1);
612  }
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
LibUtilities::CommSharedPtr m_comm
Communicator.
Definition: ExpList.h:907
void Nektar::MultiRegions::DisContField2D::SetUpDG ( const std::string  variable = "DefaultVar")
protected

Set up all DG member variables and maps.

Definition at line 378 of file DisContField2D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), ASSERTL1, Nektar::StdRegions::eForwards, Nektar::SpatialDomains::ePeriodic, Nektar::MultiRegions::_PeriodicEntity::id, IsLeftAdjacentEdge(), Nektar::MultiRegions::_PeriodicEntity::isLocal, Nektar::iterator, m_bndCondExpansions, m_bndConditions, m_boundaryEdges, Nektar::MultiRegions::ExpList::m_exp, m_globalBndMat, Nektar::MultiRegions::ExpList::m_graph, m_leftAdjacentEdges, m_locTraceToTraceMap, m_periodicBwdCopy, m_periodicEdges, m_periodicFwdCopy, Nektar::MultiRegions::ExpList::m_session, m_trace, m_traceMap, Nektar::MultiRegions::NullExpListSharedPtr, Nektar::MultiRegions::_PeriodicEntity::orient, and Nektar::MultiRegions::ExpList::SetUpPhysNormals().

Referenced by DisContField2D(), and v_GetTrace().

379  {
380  // Check for multiple calls
382  {
383  return;
384  }
385 
386  ExpList1DSharedPtr trace;
388  boost::dynamic_pointer_cast<SpatialDomains::MeshGraph2D>(
389  m_graph);
390 
391  // Set up matrix map
394 
395  // Set up trace space
398  graph2D, m_periodicEdges);
399 
400  m_trace = boost::dynamic_pointer_cast<ExpList>(trace);
402  AllocateSharedPtr(m_session, graph2D, trace, *this,
405  variable);
406 
407  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
408  &elmtToTrace = m_traceMap->GetElmtToTrace();
409 
410  // Scatter trace segments to 2D elements. For each element,
411  // we find the trace segment associated to each edge. The
412  // element then retains a pointer to the trace space segments,
413  // to ensure uniqueness of normals when retrieving from two
414  //adjoining elements which do not lie in a plane.
415  for (int i = 0; i < m_exp->size(); ++i)
416  {
417  for (int j = 0; j < (*m_exp)[i]->GetNedges(); ++j)
418  {
420  (*m_exp)[i]->as<LocalRegions::Expansion2D>();
422  elmtToTrace[i][j]->as<LocalRegions::Expansion1D>();
423  LocalRegions::ExpansionSharedPtr exp = elmtToTrace[i][j];;
424  exp2d->SetEdgeExp (j, exp1d);
425  exp1d->SetAdjacentElementExp(j, exp2d);
426  }
427  }
428 
429  // Set up physical normals
431 
432  // Set up information for parallel and periodic problems.
433  for (int i = 0; i < m_trace->GetExpSize(); ++i)
434  {
436  m_trace->GetExp(i)->as<LocalRegions::Expansion1D>();
437 
438  int offset = m_trace->GetPhys_Offset(i);
439  int traceGeomId = traceEl->GetGeom1D()->GetGlobalID();
440  PeriodicMap::iterator pIt = m_periodicEdges.find(traceGeomId);
441 
442  if (pIt != m_periodicEdges.end() && !pIt->second[0].isLocal)
443  {
444  if (traceGeomId != min(pIt->second[0].id, traceGeomId))
445  {
446  traceEl->GetLeftAdjacentElementExp()->NegateEdgeNormal(
447  traceEl->GetLeftAdjacentElementEdge());
448  }
449  }
450  else if (m_traceMap->GetTraceToUniversalMapUnique(offset) < 0)
451  {
452  traceEl->GetLeftAdjacentElementExp()->NegateEdgeNormal(
453  traceEl->GetLeftAdjacentElementEdge());
454  }
455  }
456 
457  int cnt, n, e;
458 
459  // Identify boundary edges
460  for (cnt = 0, n = 0; n < m_bndCondExpansions.num_elements(); ++n)
461  {
462  if (m_bndConditions[n]->GetBoundaryConditionType() !=
464  {
465  for (e = 0; e < m_bndCondExpansions[n]->GetExpSize(); ++e)
466  {
467  m_boundaryEdges.insert(
468  m_traceMap->GetBndCondTraceToGlobalTraceMap(cnt+e));
469  }
470  }
471  cnt += m_bndCondExpansions[n]->GetExpSize();
472  }
473 
474  // Set up information for periodic boundary conditions.
475  boost::unordered_map<int,pair<int,int> > perEdgeToExpMap;
476  boost::unordered_map<int,pair<int,int> >::iterator it2;
477  for (cnt = n = 0; n < m_exp->size(); ++n)
478  {
479  for (e = 0; e < (*m_exp)[n]->GetNedges(); ++e, ++cnt)
480  {
482  (*m_exp)[n]->GetGeom()->GetEid(e));
483 
484  if (it != m_periodicEdges.end())
485  {
486  perEdgeToExpMap[it->first] = make_pair(n, e);
487  }
488  }
489  }
490 
491  // Set up left-adjacent edge list.
492  m_leftAdjacentEdges.resize(cnt);
493  cnt = 0;
494  for (int i = 0; i < m_exp->size(); ++i)
495  {
496  for (int j = 0; j < (*m_exp)[i]->GetNedges(); ++j, ++cnt)
497  {
499  }
500  }
501 
502  // Set up mapping to copy Fwd of periodic bcs to Bwd of other edge.
503  cnt = 0;
504  for (int n = 0; n < m_exp->size(); ++n)
505  {
506  for (int e = 0; e < (*m_exp)[n]->GetNedges(); ++e, ++cnt)
507  {
508  int edgeGeomId = (*m_exp)[n]->GetGeom()->GetEid(e);
509  int offset = m_trace->GetPhys_Offset(
510  elmtToTrace[n][e]->GetElmtId());
511 
512  // Check to see if this face is periodic.
513  PeriodicMap::iterator it = m_periodicEdges.find(edgeGeomId);
514 
515  if (it != m_periodicEdges.end())
516  {
517  const PeriodicEntity &ent = it->second[0];
518  it2 = perEdgeToExpMap.find(ent.id);
519 
520  if (it2 == perEdgeToExpMap.end())
521  {
522  if (m_session->GetComm()->
523  GetRowComm()->GetSize() > 1 && !ent.isLocal)
524  {
525  continue;
526  }
527  else
528  {
529  ASSERTL1(false, "Periodic edge not found!");
530  }
531  }
532 
534  "Periodic edge in non-forward space?");
535 
536  int offset2 = m_trace->GetPhys_Offset(
537  elmtToTrace[it2->second.first][it2->second.second]->
538  GetElmtId());
539 
540  // Calculate relative orientations between edges to
541  // calculate copying map.
542  int nquad = elmtToTrace[n][e]->GetNumPoints(0);
543 
544  vector<int> tmpBwd(nquad);
545  vector<int> tmpFwd(nquad);
546 
547  if (ent.orient == StdRegions::eForwards)
548  {
549  for (int i = 0; i < nquad; ++i)
550  {
551  tmpBwd[i] = offset2 + i;
552  tmpFwd[i] = offset + i;
553  }
554  }
555  else
556  {
557  for (int i = 0; i < nquad; ++i)
558  {
559  tmpBwd[i] = offset2 + i;
560  tmpFwd[i] = offset + nquad - i - 1;
561  }
562  }
563 
564  for (int i = 0; i < nquad; ++i)
565  {
566  m_periodicFwdCopy.push_back(tmpFwd[i]);
567  m_periodicBwdCopy.push_back(tmpBwd[i]);
568  }
569  }
570  }
571  }
572 
574  AllocateSharedPtr(*this, m_trace, elmtToTrace,
576  }
ExpList()
The default constructor.
Definition: ExpList.cpp:95
static ExpListSharedPtr NullExpListSharedPtr
Definition: ExpList.h:1395
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
std::vector< int > m_periodicFwdCopy
A vector indicating degress of freedom which need to be copied from forwards to backwards space in ca...
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
boost::shared_ptr< MeshGraph2D > MeshGraph2DSharedPtr
Definition: MeshGraph2D.h:238
LocTraceToTraceMapSharedPtr m_locTraceToTraceMap
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
boost::shared_ptr< LocalRegions::ExpansionVector > m_exp
The list of local expansions.
Definition: ExpList.h:977
boost::shared_ptr< ExpList1D > ExpList1DSharedPtr
Shared pointer to an ExpList1D object.
Definition: ExpList1D.h:50
std::set< int > m_boundaryEdges
A set storing the global IDs of any boundary edges.
SpatialDomains::MeshGraphSharedPtr m_graph
Mesh associated with this expansion list.
Definition: ExpList.h:913
LibUtilities::SessionReaderSharedPtr m_session
Session.
Definition: ExpList.h:910
boost::shared_ptr< Expansion > ExpansionSharedPtr
Definition: Expansion.h:68
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
bool IsLeftAdjacentEdge(const int n, const int e)
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
struct Nektar::MultiRegions::_PeriodicEntity PeriodicEntity
#define ASSERTL1(condition, msg)
Assert Level 1 – Debugging which is used whether in FULLDEBUG or DEBUG compilation mode...
Definition: ErrorUtil.hpp:191
boost::shared_ptr< Expansion1D > Expansion1DSharedPtr
Definition: Expansion1D.h:53
boost::shared_ptr< Expansion2D > Expansion2DSharedPtr
Definition: Expansion1D.h:49
void Nektar::MultiRegions::DisContField2D::v_AddFwdBwdTraceIntegral ( const Array< OneD, const NekDouble > &  Fwd,
const Array< OneD, const NekDouble > &  Bwd,
Array< OneD, NekDouble > &  outarray 
)
protectedvirtual

Add trace contributions into elemental coefficient spaces.

Given some quantity $ \vec{q} $, calculate the elemental integral

\[ \int_{\Omega^e} \vec{q}, \mathrm{d}S \]

and adds this to the coefficient space provided by outarray. The value of q is determined from the routine IsLeftAdjacentEdge() which if true we use Fwd else we use Bwd

See also
Expansion2D::AddEdgeNormBoundaryInt
Parameters
FwdThe trace quantities associated with left (fwd) adjancent elmt.
BwdThe trace quantities associated with right (bwd) adjacent elet.
outarrayResulting 2D coefficient space.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1636 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::GetCoeff_Offset(), Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::MultiRegions::ExpList::GetTrace(), IsLeftAdjacentEdge(), and m_traceMap.

1640  {
1641  int e,n,offset, t_offset;
1642  Array<OneD, NekDouble> e_outarray;
1643  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
1644  &elmtToTrace = m_traceMap->GetElmtToTrace();
1645 
1646  for (n = 0; n < GetExpSize(); ++n)
1647  {
1648  offset = GetCoeff_Offset(n);
1649  for (e = 0; e < (*m_exp)[n]->GetNedges(); ++e)
1650  {
1651  t_offset = GetTrace()->GetPhys_Offset(
1652  elmtToTrace[n][e]->GetElmtId());
1653 
1654  // Evaluate upwind flux less local edge
1655  if (IsLeftAdjacentEdge(n, e))
1656  {
1657  (*m_exp)[n]->AddEdgeNormBoundaryInt(
1658  e, elmtToTrace[n][e], Fwd+t_offset,
1659  e_outarray = outarray+offset);
1660  }
1661  else
1662  {
1663  (*m_exp)[n]->AddEdgeNormBoundaryInt(
1664  e, elmtToTrace[n][e], Bwd+t_offset,
1665  e_outarray = outarray+offset);
1666  }
1667 
1668  }
1669  }
1670  }
int GetCoeff_Offset(int n) const
Get the start offset position for a global list of m_coeffs correspoinding to element n...
Definition: ExpList.h:1926
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
boost::shared_ptr< ExpList > & GetTrace()
Definition: ExpList.h:2001
bool IsLeftAdjacentEdge(const int n, const int e)
void Nektar::MultiRegions::DisContField2D::v_AddTraceIntegral ( const Array< OneD, const NekDouble > &  Fx,
const Array< OneD, const NekDouble > &  Fy,
Array< OneD, NekDouble > &  outarray 
)
protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1532 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::GetCoeff_Offset(), Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::MultiRegions::ExpList::GetTrace(), and m_traceMap.

1536  {
1537  int e, n, offset, t_offset;
1538  Array<OneD, NekDouble> e_outarray;
1539  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
1540  &elmtToTrace = m_traceMap->GetElmtToTrace();
1541 
1542  for(n = 0; n < GetExpSize(); ++n)
1543  {
1544  offset = GetCoeff_Offset(n);
1545  for(e = 0; e < (*m_exp)[n]->GetNedges(); ++e)
1546  {
1547  t_offset = GetTrace()->GetPhys_Offset(
1548  elmtToTrace[n][e]->GetElmtId());
1549 
1550  (*m_exp)[n]->AddEdgeNormBoundaryInt(
1551  e,elmtToTrace[n][e],
1552  Fx + t_offset,
1553  Fy + t_offset,
1554  e_outarray = outarray+offset);
1555  }
1556  }
1557  }
int GetCoeff_Offset(int n) const
Get the start offset position for a global list of m_coeffs correspoinding to element n...
Definition: ExpList.h:1926
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
boost::shared_ptr< ExpList > & GetTrace()
Definition: ExpList.h:2001
void Nektar::MultiRegions::DisContField2D::v_AddTraceIntegral ( const Array< OneD, const NekDouble > &  Fn,
Array< OneD, NekDouble > &  outarray 
)
protectedvirtual

Add trace contributions into elemental coefficient spaces.

Given some quantity $ \vec{Fn} $, which conatins this routine calculates the integral

\[ \int_{\Omega^e} \vec{Fn}, \mathrm{d}S \]

and adds this to the coefficient space provided by outarray.

See also
Expansion2D::AddEdgeNormBoundaryInt
Parameters
FnThe trace quantities.
outarrayResulting 2D coefficient space.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1576 of file DisContField2D.cpp.

References Nektar::LibUtilities::eGauss_Lagrange, Nektar::MultiRegions::ExpList::GetCoeff_Offset(), Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::MultiRegions::ExpList::GetTrace(), m_locTraceToTraceMap, m_trace, and m_traceMap.

1579  {
1580  // Basis definition on each element
1581  LibUtilities::BasisSharedPtr basis = (*m_exp)[0]->GetBasis(0);
1582  if (basis->GetBasisType() != LibUtilities::eGauss_Lagrange)
1583  {
1584  Array<OneD, NekDouble> Fcoeffs(m_trace->GetNcoeffs());
1585  m_trace->IProductWRTBase(Fn, Fcoeffs);
1586 
1587  m_locTraceToTraceMap->AddTraceCoeffsToFieldCoeffs(Fcoeffs,
1588  outarray);
1589  }
1590  else
1591  {
1592  int e, n, offset, t_offset;
1593  Array<OneD, NekDouble> e_outarray;
1594  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
1595  &elmtToTrace = m_traceMap->GetElmtToTrace();
1596 
1597  for(n = 0; n < GetExpSize(); ++n)
1598  {
1599  offset = GetCoeff_Offset(n);
1600  for(e = 0; e < (*m_exp)[n]->GetNedges(); ++e)
1601  {
1602  t_offset = GetTrace()->GetPhys_Offset(
1603  elmtToTrace[n][e]->GetElmtId());
1604  (*m_exp)[n]->AddEdgeNormBoundaryInt(
1605  e, elmtToTrace[n][e],
1606  Fn+t_offset,
1607  e_outarray = outarray+offset);
1608  }
1609  }
1610  }
1611  }
int GetCoeff_Offset(int n) const
Get the start offset position for a global list of m_coeffs correspoinding to element n...
Definition: ExpList.h:1926
Lagrange Polynomials using the Gauss points .
Definition: BasisType.h:54
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
boost::shared_ptr< ExpList > & GetTrace()
Definition: ExpList.h:2001
LocTraceToTraceMapSharedPtr m_locTraceToTraceMap
boost::shared_ptr< Basis > BasisSharedPtr
void Nektar::MultiRegions::DisContField2D::v_EvaluateBoundaryConditions ( const NekDouble  time = 0.0,
const std::string  varName = "",
const NekDouble  x2_in = NekConstants::kNekUnsetDouble,
const NekDouble  x3_in = NekConstants::kNekUnsetDouble 
)
protectedvirtual

Evaluates the boundary condition expansions, bndCondExpansions, given the information provided by bndConditions.

Parameters
timeThe time at which the boundary conditions should be evaluated.
bndCondExpansionsList of boundary conditions.
bndConditionsInformation about the boundary conditions.

This will only be undertaken for time dependent boundary conditions unless time == 0.0 which is the case when the method is called from the constructor.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 2222 of file DisContField2D.cpp.

References ASSERTL0, Nektar::SpatialDomains::eDirichlet, Nektar::SpatialDomains::eNeumann, Nektar::SpatialDomains::eRobin, Nektar::LibUtilities::Equation::Evaluate(), Nektar::MultiRegions::ExpList::ExtractFileBCs(), Vmath::Fill(), Nektar::NekConstants::kNekUnsetDouble, m_bndCondExpansions, and m_bndConditions.

2227  {
2228  int i;
2229  int npoints;
2230  int nbnd = m_bndCondExpansions.num_elements();
2231 
2232  MultiRegions::ExpListSharedPtr locExpList;
2233 
2234  for (i = 0; i < nbnd; ++i)
2235  {
2236  if (time == 0.0 ||
2237  m_bndConditions[i]->IsTimeDependent())
2238  {
2239  locExpList = m_bndCondExpansions[i];
2240  npoints = locExpList->GetNpoints();
2241  Array<OneD, NekDouble> x0(npoints, 0.0);
2242  Array<OneD, NekDouble> x1(npoints, 0.0);
2243  Array<OneD, NekDouble> x2(npoints, 0.0);
2244 
2245  // Homogeneous input case for x2.
2246  if (x2_in == NekConstants::kNekUnsetDouble)
2247  {
2248  locExpList->GetCoords(x0, x1, x2);
2249  }
2250  else
2251  {
2252  locExpList->GetCoords(x0, x1, x2);
2253  Vmath::Fill(npoints, x2_in, x2, 1);
2254  }
2255 
2256  if (m_bndConditions[i]->GetBoundaryConditionType()
2258  {
2259  string filebcs = boost::static_pointer_cast<
2260  SpatialDomains::DirichletBoundaryCondition>(
2261  m_bndConditions[i])->m_filename;
2262 
2263  if (filebcs != "")
2264  {
2265  ExtractFileBCs(filebcs, varName, locExpList);
2266  }
2267  else
2268  {
2269  LibUtilities::Equation condition =
2270  boost::static_pointer_cast<
2271  SpatialDomains::DirichletBoundaryCondition>
2272  (m_bndConditions[i])->
2273  m_dirichletCondition;
2274 
2275  condition.Evaluate(x0, x1, x2, time,
2276  locExpList->UpdatePhys());
2277  }
2278 
2279  locExpList->FwdTrans_BndConstrained(
2280  locExpList->GetPhys(),
2281  locExpList->UpdateCoeffs());
2282  }
2283  else if (m_bndConditions[i]->GetBoundaryConditionType()
2285  {
2286  string filebcs = boost::static_pointer_cast<
2287  SpatialDomains::NeumannBoundaryCondition>(
2288  m_bndConditions[i])->m_filename;
2289 
2290  if (filebcs != "")
2291  {
2292  ExtractFileBCs(filebcs, varName, locExpList);
2293  }
2294  else
2295  {
2296  LibUtilities::Equation condition =
2297  boost::static_pointer_cast<
2298  SpatialDomains::NeumannBoundaryCondition>
2299  (m_bndConditions[i])->
2300  m_neumannCondition;
2301  condition.Evaluate(x0, x1, x2, time,
2302  locExpList->UpdatePhys());
2303  }
2304 
2305  locExpList->IProductWRTBase(
2306  locExpList->GetPhys(),
2307  locExpList->UpdateCoeffs());
2308  }
2309  else if (m_bndConditions[i]->GetBoundaryConditionType()
2311  {
2312  string filebcs = boost::static_pointer_cast<
2313  SpatialDomains::RobinBoundaryCondition>
2314  (m_bndConditions[i])->m_filename;
2315 
2316  if (filebcs != "")
2317  {
2318  ExtractFileBCs(filebcs, varName, locExpList);
2319  }
2320  else
2321  {
2322  LibUtilities::Equation condition =
2323  boost::static_pointer_cast<
2324  SpatialDomains::RobinBoundaryCondition>
2325  (m_bndConditions[i])->
2326  m_robinFunction;
2327  condition.Evaluate(x0, x1, x2, time,
2328  locExpList->UpdatePhys());
2329  }
2330 
2331  LibUtilities::Equation coeff =
2332  boost::static_pointer_cast<
2333  SpatialDomains::RobinBoundaryCondition>(
2334  m_bndConditions[i])->m_robinPrimitiveCoeff;
2335  locExpList->IProductWRTBase(
2336  locExpList->GetPhys(),
2337  locExpList->UpdateCoeffs());
2338 
2339  // put primitive coefficient into the physical
2340  // space storage
2341  coeff.Evaluate(x0, x1, x2, time,
2342  locExpList->UpdatePhys());
2343  }
2344  else
2345  {
2346  ASSERTL0(false, "This type of BC not implemented yet");
2347  }
2348  }
2349  else if (boost::iequals(m_bndConditions[i]->GetUserDefined(),
2350  "MovingBody"))
2351  {
2352  locExpList = m_bndCondExpansions[i];
2353  if (m_bndConditions[i]->GetBoundaryConditionType()
2355  {
2356  locExpList->FwdTrans_IterPerExp(
2357  locExpList->GetPhys(),
2358  locExpList->UpdateCoeffs());
2359  }
2360  else
2361  {
2362  ASSERTL0(false, "This type of BC not implemented yet");
2363  }
2364  }
2365  }
2366  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
void ExtractFileBCs(const std::string &fileName, const std::string &varName, const boost::shared_ptr< ExpList > locExpList)
Definition: ExpList.cpp:1911
void Fill(int n, const T alpha, T *x, const int incx)
Fill a vector with a constant value.
Definition: Vmath.cpp:46
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
boost::shared_ptr< ExpList > ExpListSharedPtr
Shared pointer to an ExpList object.
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
static const NekDouble kNekUnsetDouble
void Nektar::MultiRegions::DisContField2D::v_ExtractTracePhys ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
protectedvirtual

This method extracts the trace (edges in 2D) from the field inarray and puts the values in outarray.

It assumes the field is C0 continuous so that it can overwrite the edge data when visited by the two adjacent elements.

Parameters
inarrayAn array containing the 2D data from which we wish to extract the edge data.
outarrayThe resulting edge information.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1502 of file DisContField2D.cpp.

References ASSERTL1, Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::MultiRegions::ExpList::GetPhys_Offset(), m_trace, and m_traceMap.

Referenced by v_ExtractTracePhys().

1505  {
1506  // Loop over elemente and collect forward expansion
1507  int nexp = GetExpSize();
1508  int n, e, offset, phys_offset;
1509  Array<OneD,NekDouble> e_tmp;
1510  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
1511  &elmtToTrace = m_traceMap->GetElmtToTrace();
1512 
1513  ASSERTL1(outarray.num_elements() >= m_trace->GetNpoints(),
1514  "input array is of insufficient length");
1515 
1516  // use m_trace tmp space in element to fill values
1517  for(n = 0; n < nexp; ++n)
1518  {
1519  phys_offset = GetPhys_Offset(n);
1520 
1521  for(e = 0; e < (*m_exp)[n]->GetNedges(); ++e)
1522  {
1523  offset = m_trace->GetPhys_Offset(
1524  elmtToTrace[n][e]->GetElmtId());
1525  (*m_exp)[n]->GetEdgePhysVals(e, elmtToTrace[n][e],
1526  inarray + phys_offset,
1527  e_tmp = outarray + offset);
1528  }
1529  }
1530  }
int GetPhys_Offset(int n) const
Get the start offset position for a global list of m_phys correspoinding to element n...
Definition: ExpList.h:1934
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
#define ASSERTL1(condition, msg)
Assert Level 1 – Debugging which is used whether in FULLDEBUG or DEBUG compilation mode...
Definition: ErrorUtil.hpp:191
void Nektar::MultiRegions::DisContField2D::v_ExtractTracePhys ( Array< OneD, NekDouble > &  outarray)
protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1482 of file DisContField2D.cpp.

References ASSERTL1, Nektar::MultiRegions::ExpList::m_phys, Nektar::MultiRegions::ExpList::m_physState, and v_ExtractTracePhys().

1484  {
1485  ASSERTL1(m_physState == true,
1486  "Field must be in physical state to extract trace space.");
1487 
1488  v_ExtractTracePhys(m_phys, outarray);
1489  }
virtual void v_ExtractTracePhys(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
This method extracts the trace (edges in 2D) from the field inarray and puts the values in outarray...
Array< OneD, NekDouble > m_phys
The global expansion evaluated at the quadrature points.
Definition: ExpList.h:956
bool m_physState
The state of the array m_phys.
Definition: ExpList.h:965
#define ASSERTL1(condition, msg)
Assert Level 1 – Debugging which is used whether in FULLDEBUG or DEBUG compilation mode...
Definition: ErrorUtil.hpp:191
void Nektar::MultiRegions::DisContField2D::v_FillBndCondFromField ( void  )
protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Reimplemented in Nektar::MultiRegions::ContField2D.

Definition at line 1477 of file DisContField2D.cpp.

1478  {
1479 
1480  }
void Nektar::MultiRegions::DisContField2D::v_GeneralMatrixOp ( const GlobalMatrixKey gkey,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
CoeffState  coeffstate = eLocal 
)
protectedvirtual

Calculates the result of the multiplication of a global matrix of type specified by mkey with a vector given by inarray.

Parameters
mkeyKey representing desired matrix multiplication.
inarrayInput vector.
outarrayResulting multiplication.

Reimplemented from Nektar::MultiRegions::ExpList.

Reimplemented in Nektar::MultiRegions::ContField2D.

Definition at line 1996 of file DisContField2D.cpp.

References Nektar::eWrapper, Nektar::MultiRegions::ExpList::GetBlockMatrix(), and m_traceMap.

2001  {
2002  int LocBndCoeffs = m_traceMap->GetNumLocalBndCoeffs();
2003  Array<OneD, NekDouble> loc_lambda(LocBndCoeffs);
2004  DNekVec LocLambda(LocBndCoeffs,loc_lambda,eWrapper);
2005  const DNekScalBlkMatSharedPtr& HDGHelm = GetBlockMatrix(gkey);
2006 
2007  m_traceMap->GlobalToLocalBnd(inarray, loc_lambda);
2008  LocLambda = (*HDGHelm) * LocLambda;
2009  m_traceMap->AssembleBnd(loc_lambda,outarray);
2010  }
const DNekScalBlkMatSharedPtr & GetBlockMatrix(const GlobalMatrixKey &gkey)
Definition: ExpList.cpp:814
boost::shared_ptr< DNekScalBlkMat > DNekScalBlkMatSharedPtr
Definition: NekTypeDefs.hpp:74
NekVector< NekDouble > DNekVec
Definition: NekTypeDefs.hpp:49
virtual const Array<OneD,const MultiRegions::ExpListSharedPtr>& Nektar::MultiRegions::DisContField2D::v_GetBndCondExpansions ( void  )
inlineprotectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 265 of file DisContField2D.h.

References m_bndCondExpansions.

266  {
267  return m_bndCondExpansions;
268  }
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
virtual const Array<OneD,const SpatialDomains::BoundaryConditionShPtr>& Nektar::MultiRegions::DisContField2D::v_GetBndConditions ( void  )
inlineprotectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Reimplemented in Nektar::MultiRegions::ContField2D.

Definition at line 272 of file DisContField2D.h.

References m_bndConditions.

273  {
274  return m_bndConditions;
275  }
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
void Nektar::MultiRegions::DisContField2D::v_GetBndElmtExpansion ( int  i,
boost::shared_ptr< ExpList > &  result 
)
protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1732 of file DisContField2D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::MultiRegions::ExpList::GetBoundaryToElmtMap(), Nektar::MultiRegions::ExpList::GetCoeff_Offset(), Nektar::MultiRegions::ExpList::GetCoeffs(), Nektar::MultiRegions::ExpList::GetExp(), Nektar::MultiRegions::ExpList::GetPhys(), Nektar::MultiRegions::ExpList::GetPhys_Offset(), m_bndCondExpansions, and Vmath::Vcopy().

1734  {
1735  int n, cnt, nq;
1736  int offsetOld, offsetNew;
1737  Array<OneD, NekDouble> tmp1, tmp2;
1738  std::vector<unsigned int> eIDs;
1739 
1740  Array<OneD, int> ElmtID,EdgeID;
1741  GetBoundaryToElmtMap(ElmtID,EdgeID);
1742 
1743  // Skip other boundary regions
1744  for (cnt = n = 0; n < i; ++n)
1745  {
1746  cnt += m_bndCondExpansions[n]->GetExpSize();
1747  }
1748 
1749  // Populate eIDs with information from BoundaryToElmtMap
1750  for (n = 0; n < m_bndCondExpansions[i]->GetExpSize(); ++n)
1751  {
1752  eIDs.push_back(ElmtID[cnt+n]);
1753  }
1754 
1755  // Create expansion list
1756  result =
1758 
1759  // Copy phys and coeffs to new explist
1760  for (n = 0; n < result->GetExpSize(); ++n)
1761  {
1762  nq = GetExp(ElmtID[cnt+n])->GetTotPoints();
1763  offsetOld = GetPhys_Offset(ElmtID[cnt+n]);
1764  offsetNew = result->GetPhys_Offset(n);
1765  Vmath::Vcopy(nq, tmp1 = GetPhys()+ offsetOld, 1,
1766  tmp2 = result->UpdatePhys()+ offsetNew, 1);
1767 
1768  nq = GetExp(ElmtID[cnt+n])->GetNcoeffs();
1769  offsetOld = GetCoeff_Offset(ElmtID[cnt+n]);
1770  offsetNew = result->GetCoeff_Offset(n);
1771  Vmath::Vcopy(nq, tmp1 = GetCoeffs()+ offsetOld, 1,
1772  tmp2 = result->UpdateCoeffs()+ offsetNew, 1);
1773  }
1774  }
const Array< OneD, const NekDouble > & GetCoeffs() const
This function returns (a reference to) the array (implemented as m_coeffs) containing all local expa...
Definition: ExpList.h:1834
int GetCoeff_Offset(int n) const
Get the start offset position for a global list of m_coeffs correspoinding to element n...
Definition: ExpList.h:1926
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
int GetPhys_Offset(int n) const
Get the start offset position for a global list of m_phys correspoinding to element n...
Definition: ExpList.h:1934
const boost::shared_ptr< LocalRegions::ExpansionVector > GetExp() const
This function returns the vector of elements in the expansion.
Definition: ExpList.h:1917
void GetBoundaryToElmtMap(Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)
Definition: ExpList.h:2144
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
const Array< OneD, const NekDouble > & GetPhys() const
This function returns (a reference to) the array (implemented as m_phys) containing the function ev...
Definition: ExpList.h:1887
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1047
void Nektar::MultiRegions::DisContField2D::v_GetBoundaryToElmtMap ( Array< OneD, int > &  ElmtID,
Array< OneD, int > &  EdgeID 
)
protectedvirtual

Set up a list of element IDs and edge IDs that link to the boundary conditions.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1676 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::GetExpSize(), m_bndCondExpansions, m_bndConditions, and Nektar::MultiRegions::ExpList::m_graph.

1679  {
1680  map<int, int> globalIdMap;
1681  int i,n;
1682  int cnt;
1683  int nbcs = 0;
1684 
1686  boost::dynamic_pointer_cast<SpatialDomains::MeshGraph2D>(
1687  m_graph);
1688 
1689  // Populate global ID map (takes global geometry ID to local
1690  // expansion list ID).
1691  for (i = 0; i < GetExpSize(); ++i)
1692  {
1693  globalIdMap[(*m_exp)[i]->GetGeom()->GetGlobalID()] = i;
1694  }
1695 
1696  // Determine number of boundary condition expansions.
1697  for(i = 0; i < m_bndConditions.num_elements(); ++i)
1698  {
1699  nbcs += m_bndCondExpansions[i]->GetExpSize();
1700  }
1701 
1702  // make sure arrays are of sufficient length
1703  if(ElmtID.num_elements() != nbcs)
1704  {
1705  ElmtID = Array<OneD, int>(nbcs);
1706  }
1707 
1708  if(EdgeID.num_elements() != nbcs)
1709  {
1710  EdgeID = Array<OneD, int>(nbcs);
1711  }
1712 
1714  for (cnt = n = 0; n < m_bndCondExpansions.num_elements(); ++n)
1715  {
1716  for (i = 0; i < m_bndCondExpansions[n]->GetExpSize();
1717  ++i, ++cnt)
1718  {
1719  exp1d = m_bndCondExpansions[n]->GetExp(i)->
1720  as<LocalRegions::Expansion1D>();
1721  // Use edge to element map from MeshGraph2D.
1723  graph2D->GetElementsFromEdge(exp1d->GetGeom1D());
1724 
1725  ElmtID[cnt] = globalIdMap[(*tmp)[0]->
1726  m_Element->GetGlobalID()];
1727  EdgeID[cnt] = (*tmp)[0]->m_EdgeIndx;
1728  }
1729  }
1730  }
boost::shared_ptr< MeshGraph2D > MeshGraph2DSharedPtr
Definition: MeshGraph2D.h:238
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
SpatialDomains::MeshGraphSharedPtr m_graph
Mesh associated with this expansion list.
Definition: ExpList.h:913
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
boost::shared_ptr< ElementEdgeVector > ElementEdgeVectorSharedPtr
Definition: MeshGraph.h:134
boost::shared_ptr< Expansion1D > Expansion1DSharedPtr
Definition: Expansion1D.h:53
void Nektar::MultiRegions::DisContField2D::v_GetFwdBwdTracePhys ( const Array< OneD, const NekDouble > &  field,
Array< OneD, NekDouble > &  Fwd,
Array< OneD, NekDouble > &  Bwd 
)
protectedvirtual

This method extracts the "forward" and "backward" trace data from the array field and puts the data into output vectors Fwd and Bwd.

We first define the convention which defines "forwards" and "backwards". First an association is made between the edge of each element and its corresponding edge in the trace space using the mapping m_traceMap. The element can either be left-adjacent or right-adjacent to this trace edge (see Expansion1D::GetLeftAdjacentElementExp). Boundary edges are always left-adjacent since left-adjacency is populated first.

If the element is left-adjacent we extract the edge trace data from field into the forward trace space Fwd; otherwise, we place it in the backwards trace space Bwd. In this way, we form a unique set of trace normals since these are always extracted from left-adjacent elements.

Parameters
fieldis a NekDouble array which contains the 2D data from which we wish to extract the backward and forward orientated trace/edge arrays.
FwdThe resulting forwards space.
BwdThe resulting backwards space.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1352 of file DisContField2D.cpp.

References ASSERTL0, Nektar::SpatialDomains::eDirichlet, Nektar::LibUtilities::eGauss_Lagrange, Nektar::SpatialDomains::eNeumann, Nektar::SpatialDomains::ePeriodic, Nektar::SpatialDomains::eRobin, Nektar::MultiRegions::ExpList::GetExpSize(), Nektar::MultiRegions::ExpList::GetPhys(), Nektar::MultiRegions::ExpList::GetPhys_Offset(), Nektar::iterator, m_bndCondExpansions, m_bndConditions, m_leftAdjacentEdges, m_locTraceToTraceMap, m_periodicBwdCopy, m_periodicFwdCopy, m_trace, m_traceMap, npts, Vmath::Vcopy(), and Vmath::Zero().

Referenced by v_GetFwdBwdTracePhys().

1356  {
1357  int cnt, n, e, npts, phys_offset;
1358 
1359  // Zero forward/backward vectors.
1360  Vmath::Zero(Fwd.num_elements(), Fwd, 1);
1361  Vmath::Zero(Bwd.num_elements(), Bwd, 1);
1362 
1363  // Basis definition on each element
1364  LibUtilities::BasisSharedPtr basis = (*m_exp)[0]->GetBasis(0);
1365  if (basis->GetBasisType() != LibUtilities::eGauss_Lagrange)
1366  {
1367 
1368  // blocked routine
1369  Array<OneD, NekDouble> edgevals(m_locTraceToTraceMap->
1370  GetNLocTracePts());
1371 
1372  m_locTraceToTraceMap->LocTracesFromField(field, edgevals);
1373  m_locTraceToTraceMap->InterpLocEdgesToTrace(0, edgevals, Fwd);
1374 
1375  Array<OneD, NekDouble> invals = edgevals + m_locTraceToTraceMap->
1376  GetNFwdLocTracePts();
1377  m_locTraceToTraceMap->InterpLocEdgesToTrace(1, invals, Bwd);
1378  }
1379  else
1380  {
1381  // Loop over elements and collect forward expansion
1382  int nexp = GetExpSize();
1383  Array<OneD,NekDouble> e_tmp;
1385  boost::unordered_map<int,pair<int,int> >::iterator it3;
1387 
1388  Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr> >
1389  &elmtToTrace = m_traceMap->GetElmtToTrace();
1390 
1391  for(cnt = n = 0; n < nexp; ++n)
1392  {
1393  exp2d = (*m_exp)[n]->as<LocalRegions::Expansion2D>();
1394  phys_offset = GetPhys_Offset(n);
1395 
1396  for(e = 0; e < exp2d->GetNedges(); ++e, ++cnt)
1397  {
1398  int offset = m_trace->GetPhys_Offset(
1399  elmtToTrace[n][e]->GetElmtId());
1400 
1401  if (m_leftAdjacentEdges[cnt])
1402  {
1403  exp2d->GetEdgePhysVals(e, elmtToTrace[n][e],
1404  field + phys_offset,
1405  e_tmp = Fwd + offset);
1406  }
1407  else
1408  {
1409  exp2d->GetEdgePhysVals(e, elmtToTrace[n][e],
1410  field + phys_offset,
1411  e_tmp = Bwd + offset);
1412  }
1413 
1414  }
1415  }
1416  }
1417 
1418  // Fill boundary conditions into missing elements
1419  int id1, id2 = 0;
1420 
1421  for (cnt = n = 0; n < m_bndCondExpansions.num_elements(); ++n)
1422  {
1423  if (m_bndConditions[n]->GetBoundaryConditionType() ==
1425  {
1426  for (e = 0; e < m_bndCondExpansions[n]->GetExpSize(); ++e)
1427  {
1428  npts = m_bndCondExpansions[n]->GetExp(e)->GetNumPoints(0);
1429  id1 = m_bndCondExpansions[n]->GetPhys_Offset(e);
1430  id2 = m_trace->GetPhys_Offset(m_traceMap->
1431  GetBndCondTraceToGlobalTraceMap(cnt+e));
1432  Vmath::Vcopy(npts,
1433  &(m_bndCondExpansions[n]->GetPhys())[id1], 1,
1434  &Bwd[id2], 1);
1435  }
1436 
1437  cnt += e;
1438  }
1439  else if (m_bndConditions[n]->GetBoundaryConditionType() ==
1441  m_bndConditions[n]->GetBoundaryConditionType() ==
1443  {
1444  for(e = 0; e < m_bndCondExpansions[n]->GetExpSize(); ++e)
1445  {
1446  npts = m_bndCondExpansions[n]->GetExp(e)->GetNumPoints(0);
1447  id1 = m_bndCondExpansions[n]->GetPhys_Offset(e);
1448  ASSERTL0((m_bndCondExpansions[n]->GetPhys())[id1]==0.0,
1449  "Method not set up for non-zero Neumann "
1450  "boundary condition");
1451  id2 = m_trace->GetPhys_Offset(
1452  m_traceMap->GetBndCondTraceToGlobalTraceMap(cnt+e));
1453  Vmath::Vcopy(npts, &Fwd[id2], 1, &Bwd[id2], 1);
1454  }
1455 
1456  cnt += e;
1457  }
1458  else if (m_bndConditions[n]->GetBoundaryConditionType() !=
1460  {
1461  ASSERTL0(false,
1462  "Method not set up for this boundary condition.");
1463  }
1464  }
1465 
1466  // Copy any periodic boundary conditions.
1467  for (n = 0; n < m_periodicFwdCopy.size(); ++n)
1468  {
1469  Bwd[m_periodicBwdCopy[n]] = Fwd[m_periodicFwdCopy[n]];
1470  }
1471 
1472  // Do parallel exchange for forwards/backwards spaces.
1473  m_traceMap->UniversalTraceAssemble(Fwd);
1474  m_traceMap->UniversalTraceAssemble(Bwd);
1475  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
int GetPhys_Offset(int n) const
Get the start offset position for a global list of m_phys correspoinding to element n...
Definition: ExpList.h:1934
std::vector< int > m_periodicFwdCopy
A vector indicating degress of freedom which need to be copied from forwards to backwards space in ca...
Lagrange Polynomials using the Gauss points .
Definition: BasisType.h:54
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
LocTraceToTraceMapSharedPtr m_locTraceToTraceMap
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
static std::string npts
Definition: InputFld.cpp:43
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
const Array< OneD, const NekDouble > & GetPhys() const
This function returns (a reference to) the array (implemented as m_phys) containing the function ev...
Definition: ExpList.h:1887
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
boost::shared_ptr< Basis > BasisSharedPtr
void Zero(int n, T *x, const int incx)
Zero vector.
Definition: Vmath.cpp:359
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1047
boost::shared_ptr< Expansion2D > Expansion2DSharedPtr
Definition: Expansion1D.h:49
void Nektar::MultiRegions::DisContField2D::v_GetFwdBwdTracePhys ( Array< OneD, NekDouble > &  Fwd,
Array< OneD, NekDouble > &  Bwd 
)
protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1320 of file DisContField2D.cpp.

References Nektar::MultiRegions::ExpList::m_phys, and v_GetFwdBwdTracePhys().

1323  {
1324  v_GetFwdBwdTracePhys(m_phys, Fwd, Bwd);
1325  }
Array< OneD, NekDouble > m_phys
The global expansion evaluated at the quadrature points.
Definition: ExpList.h:956
virtual void v_GetFwdBwdTracePhys(const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)
This method extracts the "forward" and "backward" trace data from the array field and puts the data i...
virtual void Nektar::MultiRegions::DisContField2D::v_GetPeriodicEntities ( PeriodicMap periodicVerts,
PeriodicMap periodicEdges,
PeriodicMap periodicFaces 
)
inlineprotectedvirtual

Obtain a copy of the periodic edges and vertices for this field.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 249 of file DisContField2D.h.

References m_periodicEdges, and m_periodicVerts.

253  {
254  periodicVerts = m_periodicVerts;
255  periodicEdges = m_periodicEdges;
256  }
PeriodicMap m_periodicEdges
A map which identifies pairs of periodic edges.
PeriodicMap m_periodicVerts
A map which identifies groups of periodic vertices.
map< int, RobinBCInfoSharedPtr > Nektar::MultiRegions::DisContField2D::v_GetRobinBCInfo ( void  )
protectedvirtual

Search through the edge expansions and identify which ones have Robin/Mixed type boundary conditions.

If a Robin boundary is found then store the edge ID of the boundary condition and the array of points of the physical space boundary condition which are hold the boundary condition primitive variable coefficient at the quatrature points

Returns
A map containing the Robin boundary condition information using a key of the element ID.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 2024 of file DisContField2D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::SpatialDomains::eRobin, Nektar::MultiRegions::ExpList::GetBoundaryToElmtMap(), m_bndCondExpansions, and m_bndConditions.

2025  {
2026  int i,cnt;
2027  map<int, RobinBCInfoSharedPtr> returnval;
2028  Array<OneD, int> ElmtID,EdgeID;
2029  GetBoundaryToElmtMap(ElmtID,EdgeID);
2030 
2031  for(cnt = i = 0; i < m_bndCondExpansions.num_elements(); ++i)
2032  {
2033  MultiRegions::ExpListSharedPtr locExpList;
2034 
2035  if(m_bndConditions[i]->GetBoundaryConditionType() ==
2037  {
2038  int e,elmtid;
2039  Array<OneD, NekDouble> Array_tmp;
2040 
2041  locExpList = m_bndCondExpansions[i];
2042 
2043  for(e = 0; e < locExpList->GetExpSize(); ++e)
2044  {
2047  EdgeID[cnt+e],
2048  Array_tmp = locExpList->GetPhys() +
2049  locExpList->GetPhys_Offset(e));
2050  elmtid = ElmtID[cnt+e];
2051  // make link list if necessary
2052  if(returnval.count(elmtid) != 0)
2053  {
2054  rInfo->next = returnval.find(elmtid)->second;
2055  }
2056  returnval[elmtid] = rInfo;
2057  }
2058  }
2059  cnt += m_bndCondExpansions[i]->GetExpSize();
2060  }
2061 
2062  return returnval;
2063  }
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
boost::shared_ptr< RobinBCInfo > RobinBCInfoSharedPtr
void GetBoundaryToElmtMap(Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)
Definition: ExpList.h:2144
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
boost::shared_ptr< ExpList > ExpListSharedPtr
Shared pointer to an ExpList object.
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
virtual ExpListSharedPtr& Nektar::MultiRegions::DisContField2D::v_GetTrace ( )
inlinevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 87 of file DisContField2D.h.

References m_trace, Nektar::MultiRegions::NullExpListSharedPtr, and SetUpDG().

88  {
90  {
91  SetUpDG();
92  }
93 
94  return m_trace;
95  }
static ExpListSharedPtr NullExpListSharedPtr
Definition: ExpList.h:1395
void SetUpDG(const std::string="DefaultVar")
Set up all DG member variables and maps.
virtual AssemblyMapDGSharedPtr& Nektar::MultiRegions::DisContField2D::v_GetTraceMap ( void  )
inlineprotectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 259 of file DisContField2D.h.

References m_traceMap.

260  {
261  return m_traceMap;
262  }
void Nektar::MultiRegions::DisContField2D::v_HelmSolve ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
const FlagList flags,
const StdRegions::ConstFactorMap factors,
const StdRegions::VarCoeffMap varcoeff,
const Array< OneD, const NekDouble > &  dirForcing 
)
protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Reimplemented in Nektar::MultiRegions::ContField2D.

Definition at line 1855 of file DisContField2D.cpp.

References Nektar::SpatialDomains::eDirichlet, Nektar::StdRegions::eHybridDGHelmBndLam, Nektar::StdRegions::eHybridDGLamToU, Nektar::StdRegions::eInvHybridDGHelmholtz, Nektar::eWrapper, Nektar::MultiRegions::ExpList::GetBlockMatrix(), Nektar::MultiRegions::ExpList::GetExpSize(), GetGlobalBndLinSys(), Nektar::MultiRegions::ExpList::GetNcoeffs(), Nektar::MultiRegions::ExpList::IProductWRTBase(), m_bndCondExpansions, m_bndConditions, Nektar::MultiRegions::ExpList::m_ncoeffs, Nektar::MultiRegions::ExpList::m_offset_elmt_id, m_trace, m_traceMap, Vmath::Neg(), Nektar::MultiRegions::NullAssemblyMapSharedPtr, Nektar::Transpose(), and Vmath::Zero().

1862  {
1863  int i,j,n,cnt,cnt1,nbndry;
1864  int nexp = GetExpSize();
1866 
1867  Array<OneD,NekDouble> f(m_ncoeffs);
1868  DNekVec F(m_ncoeffs,f,eWrapper);
1869  Array<OneD,NekDouble> e_f, e_l;
1870 
1871  //----------------------------------
1872  // Setup RHS Inner product
1873  //----------------------------------
1874  IProductWRTBase(inarray,f);
1875  Vmath::Neg(m_ncoeffs,f,1);
1876 
1877  //----------------------------------
1878  // Solve continuous flux System
1879  //----------------------------------
1880  int GloBndDofs = m_traceMap->GetNumGlobalBndCoeffs();
1881  int NumDirichlet = m_traceMap->GetNumLocalDirBndCoeffs();
1882  int e_ncoeffs,id;
1883 
1884  // Retrieve block matrix of U^e
1885  GlobalMatrixKey HDGLamToUKey(StdRegions::eHybridDGLamToU,
1886  NullAssemblyMapSharedPtr,factors,varcoeff);
1887  const DNekScalBlkMatSharedPtr &HDGLamToU = GetBlockMatrix(
1888  HDGLamToUKey);
1889 
1890  // Retrieve global trace space storage, \Lambda, from trace
1891  // expansion
1892  Array<OneD,NekDouble> BndSol = m_trace->UpdateCoeffs();
1893 
1894  // Create trace space forcing, F
1895  Array<OneD,NekDouble> BndRhs(GloBndDofs,0.0);
1896 
1897  // Zero \Lambda
1898  Vmath::Zero(GloBndDofs,BndSol,1);
1899 
1900  // Retrieve number of local trace space coefficients N_{\lambda},
1901  // and set up local elemental trace solution \lambda^e.
1902  int LocBndCoeffs = m_traceMap->GetNumLocalBndCoeffs();
1903  Array<OneD, NekDouble> loc_lambda(LocBndCoeffs);
1904  DNekVec LocLambda(LocBndCoeffs,loc_lambda,eWrapper);
1905 
1906  //----------------------------------
1907  // Evaluate Trace Forcing vector F
1908  // Kirby et al, 2010, P23, Step 5.
1909  //----------------------------------
1910  // Loop over all expansions in the domain
1911  for(cnt = cnt1 = n = 0; n < nexp; ++n)
1912  {
1913  nbndry = (*m_exp)[m_offset_elmt_id[n]]->NumDGBndryCoeffs();
1914 
1915  e_ncoeffs = (*m_exp)[m_offset_elmt_id[n]]->GetNcoeffs();
1916  e_f = f + cnt;
1917  e_l = loc_lambda + cnt1;
1918 
1919  // Local trace space \lambda^e
1920  DNekVec Floc (nbndry, e_l, eWrapper);
1921  // Local forcing f^e
1922  DNekVec ElmtFce (e_ncoeffs, e_f, eWrapper);
1923  // Compute local (U^e)^{\top} f^e
1924  Floc = Transpose(*(HDGLamToU->GetBlock(n,n)))*ElmtFce;
1925 
1926  cnt += e_ncoeffs;
1927  cnt1 += nbndry;
1928  }
1929 
1930  // Assemble local \lambda_e into global \Lambda
1931  m_traceMap->AssembleBnd(loc_lambda,BndRhs);
1932 
1933  // Copy Dirichlet boundary conditions and weak forcing into trace
1934  // space
1935  cnt = 0;
1936  for(i = 0; i < m_bndCondExpansions.num_elements(); ++i)
1937  {
1938  if(m_bndConditions[i]->GetBoundaryConditionType() ==
1940  {
1941  for(j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); ++j)
1942  {
1943  id = m_traceMap->GetBndCondCoeffsToGlobalCoeffsMap(cnt++);
1944  BndSol[id] = m_bndCondExpansions[i]->GetCoeffs()[j];
1945  }
1946  }
1947  else
1948  {
1949  //Add weak boundary condition to trace forcing
1950  for(j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); ++j)
1951  {
1952  id = m_traceMap->GetBndCondCoeffsToGlobalCoeffsMap(cnt++);
1953  BndRhs[id] += m_bndCondExpansions[i]->GetCoeffs()[j];
1954  }
1955  }
1956  }
1957 
1958  //----------------------------------
1959  // Solve trace problem: \Lambda = K^{-1} F
1960  // K is the HybridDGHelmBndLam matrix.
1961  //----------------------------------
1962  if(GloBndDofs - NumDirichlet > 0)
1963  {
1964  GlobalLinSysKey key(StdRegions::eHybridDGHelmBndLam,
1965  m_traceMap,factors,varcoeff);
1967  LinSys->Solve(BndRhs,BndSol,m_traceMap);
1968  }
1969 
1970  //----------------------------------
1971  // Internal element solves
1972  //----------------------------------
1973  GlobalMatrixKey invHDGhelmkey(StdRegions::eInvHybridDGHelmholtz,
1974  NullAssemblyMapSharedPtr,factors,varcoeff);
1975  const DNekScalBlkMatSharedPtr& InvHDGHelm = GetBlockMatrix(
1976  invHDGhelmkey);
1977  DNekVec out(m_ncoeffs,outarray,eWrapper);
1978  Vmath::Zero(m_ncoeffs,outarray,1);
1979 
1980  // get local trace solution from BndSol
1981  m_traceMap->GlobalToLocalBnd(BndSol,loc_lambda);
1982 
1983  // out = u_f + u_lam = (*InvHDGHelm)*f + (LamtoU)*Lam
1984  out = (*InvHDGHelm)*F + (*HDGLamToU)*LocLambda;
1985  }
const DNekScalBlkMatSharedPtr & GetBlockMatrix(const GlobalMatrixKey &gkey)
Definition: ExpList.cpp:814
GlobalLinSysSharedPtr GetGlobalBndLinSys(const GlobalLinSysKey &mkey)
int GetExpSize(void)
This function returns the number of elements in the expansion.
Definition: ExpList.h:1896
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
int m_ncoeffs
The total number of local degrees of freedom. m_ncoeffs .
Definition: ExpList.h:917
Array< OneD, int > m_offset_elmt_id
Array containing the element id m_offset_elmt_id[n] that the n^th consecutive block of data in m_coef...
Definition: ExpList.h:999
boost::shared_ptr< DNekScalBlkMat > DNekScalBlkMatSharedPtr
Definition: NekTypeDefs.hpp:74
NekMatrix< InnerMatrixType, BlockMatrixTag > Transpose(NekMatrix< InnerMatrixType, BlockMatrixTag > &rhs)
void Neg(int n, T *x, const int incx)
Negate x = -x.
Definition: Vmath.cpp:382
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...
static AssemblyMapSharedPtr NullAssemblyMapSharedPtr
Definition: AssemblyMap.h:55
NekVector< NekDouble > DNekVec
Definition: NekTypeDefs.hpp:49
void IProductWRTBase(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
Definition: ExpList.h:1559
int GetNcoeffs(void) const
Returns the total number of local degrees of freedom .
Definition: ExpList.h:1403
boost::shared_ptr< GlobalLinSys > GlobalLinSysSharedPtr
Pointer to a GlobalLinSys object.
Definition: GlobalLinSys.h:52
void Zero(int n, T *x, const int incx)
Zero vector.
Definition: Vmath.cpp:359
boost::shared_ptr< StdExpansion > StdExpansionSharedPtr
void Nektar::MultiRegions::DisContField2D::v_Reset ( )
protectedvirtual

Reset this field, so that geometry information can be updated.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 1779 of file DisContField2D.cpp.

References m_bndCondExpansions, and Nektar::MultiRegions::ExpList::v_Reset().

1780  {
1781  ExpList::v_Reset();
1782 
1783  // Reset boundary condition expansions.
1784  for (int n = 0; n < m_bndCondExpansions.num_elements(); ++n)
1785  {
1786  m_bndCondExpansions[n]->Reset();
1787  }
1788  }
virtual void v_Reset()
Reset geometry information, metrics, matrix managers and geometry information.
Definition: ExpList.cpp:1437
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
virtual MultiRegions::ExpListSharedPtr& Nektar::MultiRegions::DisContField2D::v_UpdateBndCondExpansion ( int  i)
inlineprotectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 278 of file DisContField2D.h.

279  {
280  return m_bndCondExpansions[i];
281  }
Array< OneD, MultiRegions::ExpListSharedPtr > m_bndCondExpansions
An object which contains the discretised boundary conditions.
virtual Array<OneD, SpatialDomains::BoundaryConditionShPtr>& Nektar::MultiRegions::DisContField2D::v_UpdateBndConditions ( )
inlineprotectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 284 of file DisContField2D.h.

References m_bndConditions.

285  {
286  return m_bndConditions;
287  }
Array< OneD, SpatialDomains::BoundaryConditionShPtr > m_bndConditions
An array which contains the information about the boundary condition on the different boundary region...

Member Data Documentation

Array<OneD, LibUtilities::BasisSharedPtr> Nektar::MultiRegions::DisContField2D::m_base
protected

Bases needed for the expansion

Definition at line 100 of file DisContField2D.h.

Array<OneD,MultiRegions::ExpListSharedPtr> Nektar::MultiRegions::DisContField2D::m_bndCondExpansions
protected
Array<OneD,SpatialDomains::BoundaryConditionShPtr> Nektar::MultiRegions::DisContField2D::m_bndConditions
protected
std::set<int> Nektar::MultiRegions::DisContField2D::m_boundaryEdges
protected

A set storing the global IDs of any boundary edges.

Definition at line 162 of file DisContField2D.h.

Referenced by DisContField2D(), IsLeftAdjacentEdge(), and SetUpDG().

Array<OneD,StdRegions::Orientation> Nektar::MultiRegions::DisContField2D::m_edgedir
protected

Definition at line 157 of file DisContField2D.h.

GlobalLinSysMapShPtr Nektar::MultiRegions::DisContField2D::m_globalBndMat
protected

Definition at line 145 of file DisContField2D.h.

Referenced by DisContField2D(), GetGlobalBndLinSys(), and SetUpDG().

std::vector<bool> Nektar::MultiRegions::DisContField2D::m_leftAdjacentEdges
protected

Definition at line 187 of file DisContField2D.h.

Referenced by DisContField2D(), SetUpDG(), and v_GetFwdBwdTracePhys().

LocTraceToTraceMapSharedPtr Nektar::MultiRegions::DisContField2D::m_locTraceToTraceMap
protected

Map of local trace (the points at the face of the element) to the trace space discretisation

Definition at line 153 of file DisContField2D.h.

Referenced by DisContField2D(), SetUpDG(), v_AddTraceIntegral(), and v_GetFwdBwdTracePhys().

Array<OneD, Array<OneD, unsigned int> > Nektar::MultiRegions::DisContField2D::m_mapEdgeToElmn
protected

Definition at line 155 of file DisContField2D.h.

std::vector<int> Nektar::MultiRegions::DisContField2D::m_periodicBwdCopy
protected

Definition at line 181 of file DisContField2D.h.

Referenced by DisContField2D(), SetUpDG(), and v_GetFwdBwdTracePhys().

PeriodicMap Nektar::MultiRegions::DisContField2D::m_periodicEdges
protected

A map which identifies pairs of periodic edges.

Definition at line 172 of file DisContField2D.h.

Referenced by Nektar::MultiRegions::ContField2D::ContField2D(), DisContField2D(), FindPeriodicEdges(), IsLeftAdjacentEdge(), SetUpDG(), and v_GetPeriodicEntities().

std::vector<int> Nektar::MultiRegions::DisContField2D::m_periodicFwdCopy
protected

A vector indicating degress of freedom which need to be copied from forwards to backwards space in case of a periodic boundary condition.

Definition at line 180 of file DisContField2D.h.

Referenced by DisContField2D(), SetUpDG(), and v_GetFwdBwdTracePhys().

PeriodicMap Nektar::MultiRegions::DisContField2D::m_periodicVerts
protected

A map which identifies groups of periodic vertices.

Definition at line 167 of file DisContField2D.h.

Referenced by Nektar::MultiRegions::ContField2D::ContField2D(), DisContField2D(), FindPeriodicEdges(), and v_GetPeriodicEntities().

Array<OneD, Array<OneD, unsigned int> > Nektar::MultiRegions::DisContField2D::m_signEdgeToElmn
protected

Definition at line 156 of file DisContField2D.h.

ExpListSharedPtr Nektar::MultiRegions::DisContField2D::m_trace
protected
AssemblyMapDGSharedPtr Nektar::MultiRegions::DisContField2D::m_traceMap
protected