81 if (
m_f->m_comm->TreatAsRankZero())
94 string xml_ending =
"xml";
95 string xml_gz_ending =
"xml.gz";
97 std::vector<std::string> files;
99 for (
int i = 0; i <
m_f->m_inputfiles[xml_ending].size(); ++i)
101 files.push_back(
m_f->m_inputfiles[xml_ending][i]);
105 for (
int j = 0; j <
m_f->m_inputfiles[xml_gz_ending].size(); ++j)
107 files.push_back(
m_f->m_inputfiles[xml_gz_ending][j]);
113 if (vm.count(
"range"))
115 vector<NekDouble> values;
117 "Failed to interpret range string");
119 ASSERTL0(values.size() > 1,
"Do not have minimum values of xmin,xmax");
121 "Do not have an even number of range values");
123 int nvalues = values.size() / 2;
126 rng->m_doZrange =
false;
127 rng->m_doYrange =
false;
128 rng->m_checkShape =
false;
133 rng->m_doZrange =
true;
134 rng->m_zmin = values[4];
135 rng->m_zmax = values[5];
138 rng->m_doYrange =
true;
139 rng->m_ymin = values[2];
140 rng->m_ymax = values[3];
143 rng->m_doXrange =
true;
144 rng->m_xmin = values[0];
145 rng->m_xmax = values[1];
149 "too many values specfied in range");
154 if (vm.count(
"onlyshape"))
159 rng->m_doXrange =
false;
160 rng->m_doYrange =
false;
161 rng->m_doZrange =
false;
164 rng->m_checkShape =
true;
166 string shapematch = boost::to_upper_copy(vm[
"onlyshape"].as<string>());
171 boost::to_upper(shapeval);
172 if (shapematch.compare(shapeval) == 0)
179 "Failed to find shape type in -onlyshape command line "
184 vector<string> cmdArgs;
185 cmdArgs.push_back(
"FieldConvert");
189 cmdArgs.push_back(
"--verbose");
192 if (vm.count(
"part-only"))
194 cmdArgs.push_back(
"--part-only");
196 boost::lexical_cast<string>(vm[
"part-only"].as<int>()));
199 if (vm.count(
"part-only-overlapping"))
201 cmdArgs.push_back(
"--part-only-overlapping");
203 boost::lexical_cast<string>(vm[
"part-only-overlapping"].as<int>()));
208 cmdArgs.push_back(
"--npz");
209 cmdArgs.push_back(boost::lexical_cast<string>(vm[
"npz"].as<int>()));
215 cmdArgs.push_back(
"--npt");
216 cmdArgs.push_back(boost::lexical_cast<string>(vm[
"npt"].as<int>()));
219 int argc = cmdArgs.size();
220 const char **argv =
new const char *[argc];
221 for (
int i = 0; i < argc; ++i)
223 argv[i] = cmdArgs[i].c_str();
227 argc, (
char **)argv, files,
m_f->m_comm);
229 if (vm.count(
"nparts"))
232 ASSERTL0(boost::icontains(files[0],
"_xml"),
233 "Expect the mesh to have been pre-partitioned when "
234 " using the \"--nparts\" option. Please use \"--part-only\" "
235 "option to prepartition xml file.");
243 if (
m_f->m_comm->TreatAsRankZero())
249 ss << cpuTime <<
"s";
250 cout <<
"\t InputXml session reader CPU Time: " << setw(8) << left
260 if (
m_f->m_comm->TreatAsRankZero())
266 ss << cpuTime <<
"s";
267 cout <<
"\t InputXml mesh graph setup CPU Time: " << setw(8)
268 << left << ss.str() << endl;
#define ASSERTL0(condition, msg)
#define NEKERROR(type, msg)
Assert Level 0 – Fundamental assert which is used whether in FULLDEBUG, DEBUG or OPT compilation mode...
std::set< std::string > m_allowedFiles
List of allowed file formats.
FieldSharedPtr m_f
Field object.
tKey RegisterCreatorFunction(tKey idKey, CreatorFunction classCreator, std::string pDesc="")
Register a class with the factory.
static SessionReaderSharedPtr CreateInstance(int argc, char *argv[])
Creates an instance of the SessionReader class.
NekDouble TimePerTest(unsigned int n)
Returns amount of seconds per iteration in a test with n iterations.
static std::shared_ptr< DataType > AllocateSharedPtr(const Args &...args)
Allocate a shared pointer from the memory pool.
static bool GenerateVector(const std::string &str, std::vector< T > &out)
Takes a comma-separated string and converts it to entries in a vector.
static MeshGraphSharedPtr Read(const LibUtilities::SessionReaderSharedPtr pSession, LibUtilities::DomainRangeShPtr rng=LibUtilities::NullDomainRangeShPtr, bool fillGraph=true, SpatialDomains::MeshGraphSharedPtr partitionedGraph=nullptr)
std::shared_ptr< Field > FieldSharedPtr
std::pair< ModuleType, std::string > ModuleKey
ModuleFactory & GetModuleFactory()
const char *const ShapeTypeMap[SIZE_ShapeType]
std::shared_ptr< DomainRange > DomainRangeShPtr
static DomainRangeShPtr NullDomainRangeShPtr