Inner product WRT deriv base operator using sum-factorisation (Pyr) More...

Inheritance diagram for Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr:

Public Member Functions
	~IProductWRTDerivBase_SumFac_Pyr () final=default

void	operator() (const Array< OneD, const NekDouble > &entry0, Array< OneD, NekDouble > &entry1, Array< OneD, NekDouble > &entry2, Array< OneD, NekDouble > &entry3, Array< OneD, NekDouble > &wsp) final

void	operator() (int dir, const Array< OneD, const NekDouble > &input, Array< OneD, NekDouble > &output, Array< OneD, NekDouble > &wsp) final

void	CheckFactors (StdRegions::FactorMap factors, int coll_phys_offset) override
	Check the validity of the supplied factor map. More...

Public Member Functions inherited from Nektar::Collections::Operator
	Operator (std::vector< StdRegions::StdExpansionSharedPtr > pCollExp, std::shared_ptr< CoalescedGeomData > GeomData, StdRegions::FactorMap factors)
	Constructor. More...

virtual	~Operator ()=default

virtual COLLECTIONS_EXPORT void	operator() (const Array< OneD, const NekDouble > &input, Array< OneD, NekDouble > &output0, Array< OneD, NekDouble > &output1, Array< OneD, NekDouble > &output2, Array< OneD, NekDouble > &wsp=NullNekDouble1DArray)=0
	Perform operation. More...

virtual COLLECTIONS_EXPORT void	operator() (int dir, const Array< OneD, const NekDouble > &input, Array< OneD, NekDouble > &output, Array< OneD, NekDouble > &wsp=NullNekDouble1DArray)=0

virtual COLLECTIONS_EXPORT void	CheckFactors (StdRegions::FactorMap factors, int coll_phys_offset)=0
	Check the validity of the supplied factor map. More...

unsigned int	GetWspSize ()
	Get the size of the required workspace. More...

unsigned int	GetNumElmt ()
	Get number of elements. More...

StdRegions::StdExpansionSharedPtr	GetExpSharedPtr ()
	Get expansion pointer. More...

unsigned int	GetInputSize ()

unsigned int	GetOutputSize ()

Protected Attributes
const int	m_nquad0

const int	m_nquad1

const int	m_nquad2

const int	m_nmodes0

const int	m_nmodes1

const int	m_nmodes2

Array< OneD, const NekDouble >	m_jacWStdW

Array< OneD, const NekDouble >	m_base0

Array< OneD, const NekDouble >	m_base1

Array< OneD, const NekDouble >	m_base2

Array< OneD, const NekDouble >	m_derbase0

Array< OneD, const NekDouble >	m_derbase1

Array< OneD, const NekDouble >	m_derbase2

Array< TwoD, const NekDouble >	m_derivFac

Array< OneD, NekDouble >	m_fac0

Array< OneD, NekDouble >	m_fac1

Array< OneD, NekDouble >	m_fac2

bool	m_sortTopVertex

Protected Attributes inherited from Nektar::Collections::Operator
bool	m_isDeformed

StdRegions::StdExpansionSharedPtr	m_stdExp

unsigned int	m_numElmt
	number of elements that the operator is applied on More...

unsigned int	m_nqe

unsigned int	m_wspSize

unsigned int	m_inputSize
	number of modes or quadrature points that are passed as input to an operator More...

unsigned int	m_outputSize
	number of modes or quadrature points that are taken as output from an operator More...

Private Member Functions
	IProductWRTDerivBase_SumFac_Pyr (vector< StdRegions::StdExpansionSharedPtr > pCollExp, CoalescedGeomDataSharedPtr pGeomData, StdRegions::FactorMap factors)

Private Member Functions inherited from Nektar::Collections::IProductWRTDerivBase_Helper
	IProductWRTDerivBase_Helper ()

Additional Inherited Members
Protected Member Functions inherited from Nektar::Collections::Operator
virtual int	v_GetInputSize ()
	This purely virtual function needs to be set-up for every operator inside Collections. It is responsible for returning the size of input collection, that the operator is applied on either in physical or coefficient space. More...

virtual int	v_GetOutputSize ()
	This purely virtual function needs to be set-up for every operator inside Collections. It is responsible for returning the output size either in physical or coefficient space of an operator inside Collections. More...

Detailed Description

Inner product WRT deriv base operator using sum-factorisation (Pyr)

Definition at line 1903 of file IProductWRTDerivBase.cpp.

Constructor & Destructor Documentation

◆ ~IProductWRTDerivBase_SumFac_Pyr()

Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::~IProductWRTDerivBase_SumFac_Pyr ( )

finaldefault

◆ IProductWRTDerivBase_SumFac_Pyr()

Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::IProductWRTDerivBase_SumFac_Pyr	(	vector< StdRegions::StdExpansionSharedPtr >	pCollExp,
		CoalescedGeomDataSharedPtr	pGeomData,
		StdRegions::FactorMap	factors
	)

inlineprivate

Definition at line 2097 of file IProductWRTDerivBase.cpp.

        : Operator(pCollExp, pGeomData, factors), IProductWRTDerivBase_Helper(),
          m_nquad0(m_stdExp->GetNumPoints(0)),
          m_nquad1(m_stdExp->GetNumPoints(1)),
          m_nquad2(m_stdExp->GetNumPoints(2)),
          m_nmodes0(m_stdExp->GetBasisNumModes(0)),
          m_nmodes1(m_stdExp->GetBasisNumModes(1)),
          m_nmodes2(m_stdExp->GetBasisNumModes(2)),
          m_base0(m_stdExp->GetBasis(0)->GetBdata()),
          m_base1(m_stdExp->GetBasis(1)->GetBdata()),
          m_base2(m_stdExp->GetBasis(2)->GetBdata()),
          m_derbase0(m_stdExp->GetBasis(0)->GetDbdata()),
          m_derbase1(m_stdExp->GetBasis(1)->GetDbdata()),
          m_derbase2(m_stdExp->GetBasis(2)->GetDbdata())
 
    {
        m_jacWStdW = pGeomData->GetJacWithStdWeights(pCollExp);
        m_wspSize  = 6 * m_numElmt *
                    (max(m_nquad0 * m_nquad1 * m_nquad2,
                         m_nmodes0 * m_nmodes1 * m_nmodes2));
        m_derivFac = pGeomData->GetDerivFactors(pCollExp);
 
        if (m_stdExp->GetBasis(0)->GetBasisType() == LibUtilities::eModified_A)
        {
            m_sortTopVertex = true;
        }
        else
        {
            m_sortTopVertex = false;
        }
 
        const Array<OneD, const NekDouble> &z0 = m_stdExp->GetBasis(0)->GetZ();
        const Array<OneD, const NekDouble> &z1 = m_stdExp->GetBasis(1)->GetZ();
        const Array<OneD, const NekDouble> &z2 = m_stdExp->GetBasis(2)->GetZ();
 
        m_fac0 = Array<OneD, NekDouble>(m_nquad0 * m_nquad1 * m_nquad2);
        m_fac1 = Array<OneD, NekDouble>(m_nquad0 * m_nquad1 * m_nquad2);
        m_fac2 = Array<OneD, NekDouble>(m_nquad0 * m_nquad1 * m_nquad2);
 
        for (int i = 0; i < m_nquad0; ++i)
        {
            for (int j = 0; j < m_nquad1; ++j)
            {
                for (int k = 0; k < m_nquad2; ++k)
                {
                    // set up geometric factor: 2/(1-z2)
                    m_fac0[i + j * m_nquad0 + k * m_nquad0 * m_nquad1] =
                        2.0 / (1 - z2[k]);
                    // set up geometric factor: (1+z0)/(1-z2)
                    m_fac1[i + j * m_nquad0 + k * m_nquad0 * m_nquad1] =
                        (1 + z0[i]) / (1 - z2[k]);
                    // set up geometric factor: (1+z1)/(1-z2)
                    m_fac2[i + j * m_nquad0 + k * m_nquad0 * m_nquad1] =
                        (1 + z1[j]) / (1 - z2[k]);
                }
            }
        }
    }

References Nektar::LibUtilities::eModified_A, m_derivFac, m_fac0, m_fac1, m_fac2, m_jacWStdW, m_nmodes0, m_nmodes1, m_nmodes2, m_nquad0, m_nquad1, m_nquad2, Nektar::Collections::Operator::m_numElmt, m_sortTopVertex, Nektar::Collections::Operator::m_stdExp, and Nektar::Collections::Operator::m_wspSize.

Member Function Documentation

◆ CheckFactors()

void Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::CheckFactors	(	StdRegions::FactorMap	factors,
		int	coll_phys_offset
	)

inlineoverridevirtual

Check the validity of the supplied factor map.

Implements Nektar::Collections::Operator.

Definition at line 2070 of file IProductWRTDerivBase.cpp.

    {
        ASSERTL0(false, "Not valid for this operator.");
    }

References ASSERTL0.

◆ operator()() [1/2]

void Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::operator()	(	const Array< OneD, const NekDouble > &	entry0,
		Array< OneD, NekDouble > &	entry1,
		Array< OneD, NekDouble > &	entry2,
		Array< OneD, NekDouble > &	entry3,
		Array< OneD, NekDouble > &	wsp
	)

inlinefinalvirtual

This method calculates:

\[ (d\phi/dx,in[0]) + (d\phi/dy,in[1]) + (d\phi/dz,in[2]) \]

which can be represented in terms of local cartesian derivaties as:

\[ ((d\phi/d\xi_0\, d\xi_0/dx + d\phi/d\xi_1\, d\xi_1/dx + d\phi/d\xi_2\, d\xi_2/dx),in[0]) + \]

\[ ((d\phi/d\xi_0\, d\xi_0/dy + d\phi/d\xi_1\, d\xi_1/dy + d\phi/d\xi_2\, d\xi_2/dy),in[1]) + \]

\[ ((d\phi/d\xi_0\, d\xi_0/dz + d\phi/d\xi_1\, d\xi_1/dz + d\phi/d\xi_2\, d\xi_2/dz),in[2]) \, \]

where we note that

\[ d\phi/d\xi_0 = d\phi/d\eta_0\, d\eta_0/d\xi_0 = d\phi/d\eta_0\, 2/(1-\eta_2). \]

\[ d\phi/d\xi_1 = d\phi/d\eta_1\, d\eta_1/d\xi_1 = d\phi/d\eta_1\, 2/(1-\eta_2) \]

\[ d\phi/d\xi_2 = d\phi/d\eta_0\, d\eta_0/d\xi_2 + d\phi/d\eta_1\, d\eta_1/d\xi_2 + d\phi/d\eta_2\, d\eta_2/d\xi_2 = d\phi/d\eta_0 (1+\eta_0)/(1-\eta_2) + d\phi/d\eta_1 (1+\eta_1)/(1-\eta_2) + d\phi/d\eta_2 \]

and so the full inner products are

\[ (d\phi/dx,in[0]) + (d\phi/dy,in[1]) + (d\phi/dz,in[2]) = \]

\[ (d\phi/d\eta_0, ((2/(1-\eta_2) (d\xi_0/dx in[0] + d\xi_0/dy in[1] + (1-\eta_0)/(1-\eta_2) (d\xi_2/dx in[0] + d\xi_2/dy in[1] + d\xi_2/dz in[2] )) + \]

\[ (d\phi/d\eta_1, ((2/(1-\eta_2) (d\xi_1/dx in[0] + d\xi_0/dy in[1] + d\xi_0/dz in[2]) + (1-\eta_1)/(1-\eta_2) (d\xi_2/dx in[0] + d\xi_2/dy in[1] + d\xi_2/dz in[2] )) \]

\[ (d\phi/d\eta_2, (d\xi_2/dx in[0] + d\xi_2/dy in[1] + d\xi_2/dz in[2])) \]

Implements Nektar::Collections::Operator.

Definition at line 1964 of file IProductWRTDerivBase.cpp.

    {
        unsigned int nPhys  = m_stdExp->GetTotPoints();
        unsigned int ntot   = m_numElmt * nPhys;
        unsigned int nmodes = m_stdExp->GetNcoeffs();
        unsigned int nmax   = max(ntot, m_numElmt * nmodes);
        Array<OneD, Array<OneD, const NekDouble>> in(3);
        Array<OneD, NekDouble> output, wsp1;
        Array<OneD, Array<OneD, NekDouble>> tmp(3);
 
        in[0] = entry0;
        in[1] = entry1;
        in[2] = entry2;
 
        output = entry3;
 
        for (int i = 0; i < 3; ++i)
        {
            tmp[i] = wsp + i * nmax;
        }
 
        if (m_isDeformed)
        {
            // calculate dx/dxi in[0] + dy/dxi in[1] + dz/dxi in[2]
            for (int i = 0; i < 3; ++i)
            {
                Vmath::Vmul(ntot, m_derivFac[i], 1, in[0], 1, tmp[i], 1);
                for (int j = 1; j < 3; ++j)
                {
                    Vmath::Vvtvp(ntot, m_derivFac[i + 3 * j], 1, in[j], 1,
                                 tmp[i], 1, tmp[i], 1);
                }
            }
        }
        else
        {
            Array<OneD, NekDouble> t;
            for (int e = 0; e < m_numElmt; ++e)
            {
                // calculate dx/dxi in[0] + dy/dxi in[1] + dz/dxi in[2]
                for (int i = 0; i < 3; ++i)
                {
                    Vmath::Smul(m_nqe, m_derivFac[i][e], in[0] + e * m_nqe, 1,
                                t = tmp[i] + e * m_nqe, 1);
                    for (int j = 1; j < 3; ++j)
                    {
                        Vmath::Svtvp(m_nqe, m_derivFac[i + 3 * j][e],
                                     in[j] + e * m_nqe, 1, tmp[i] + e * m_nqe,
                                     1, t = tmp[i] + e * m_nqe, 1);
                    }
                }
            }
        }
 
        wsp1 = wsp + 3 * nmax;
 
        // Sort into eta factors
        for (int i = 0; i < m_numElmt; ++i)
        {
            // scale tmp[0] by fac0
            Vmath::Vmul(nPhys, &m_fac0[0], 1, tmp[0].get() + i * nPhys, 1,
                        tmp[0].get() + i * nPhys, 1);
 
            // scale tmp[2] by fac1 and add to tmp0
            Vmath::Vvtvp(nPhys, &m_fac1[0], 1, tmp[2].get() + i * nPhys, 1,
                         tmp[0].get() + i * nPhys, 1, tmp[0].get() + i * nPhys,
                         1);
 
            // scale tmp[1] by fac0
            Vmath::Vmul(nPhys, &m_fac0[0], 1, tmp[1].get() + i * nPhys, 1,
                        tmp[1].get() + i * nPhys, 1);
 
            // scale tmp[2] by fac2 and add to tmp1
            Vmath::Vvtvp(nPhys, &m_fac2[0], 1, tmp[2].get() + i * nPhys, 1,
                         tmp[1].get() + i * nPhys, 1, tmp[1].get() + i * nPhys,
                         1);
        }
 
        // calculate Iproduct WRT Std Deriv
        PyrIProduct(m_sortTopVertex, m_numElmt, m_nquad0, m_nquad1, m_nquad2,
                    m_nmodes0, m_nmodes1, m_nmodes2, m_derbase0, m_base1,
                    m_base2, m_jacWStdW, tmp[0], output, wsp1);
 
        PyrIProduct(m_sortTopVertex, m_numElmt, m_nquad0, m_nquad1, m_nquad2,
                    m_nmodes0, m_nmodes1, m_nmodes2, m_base0, m_derbase1,
                    m_base2, m_jacWStdW, tmp[1], tmp[0], wsp1);
        Vmath::Vadd(m_numElmt * nmodes, tmp[0], 1, output, 1, output, 1);
 
        PyrIProduct(m_sortTopVertex, m_numElmt, m_nquad0, m_nquad1, m_nquad2,
                    m_nmodes0, m_nmodes1, m_nmodes2, m_base0, m_base1,
                    m_derbase2, m_jacWStdW, tmp[2], tmp[0], wsp1);
        Vmath::Vadd(m_numElmt * nmodes, tmp[0], 1, output, 1, output, 1);
    }

References m_base0, m_base1, m_base2, m_derbase0, m_derbase1, m_derbase2, m_derivFac, m_fac0, m_fac1, m_fac2, Nektar::Collections::Operator::m_isDeformed, m_jacWStdW, m_nmodes0, m_nmodes1, m_nmodes2, Nektar::Collections::Operator::m_nqe, m_nquad0, m_nquad1, m_nquad2, Nektar::Collections::Operator::m_numElmt, m_sortTopVertex, Nektar::Collections::Operator::m_stdExp, Nektar::Collections::PyrIProduct(), Vmath::Smul(), Vmath::Svtvp(), Vmath::Vadd(), Vmath::Vmul(), and Vmath::Vvtvp().

◆ operator()() [2/2]

void Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::operator()	(	int	dir,
		const Array< OneD, const NekDouble > &	input,
		Array< OneD, NekDouble > &	output,
		Array< OneD, NekDouble > &	wsp
	)

inlinefinalvirtual

Implements Nektar::Collections::Operator.

Definition at line 2062 of file IProductWRTDerivBase.cpp.

    {
        NEKERROR(ErrorUtil::efatal, "Not valid for this operator.");
    }

References Nektar::ErrorUtil::efatal, and NEKERROR.

Member Data Documentation

◆ m_base0

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_base0

protected

Definition at line 2084 of file IProductWRTDerivBase.cpp.

Referenced by operator()().

◆ m_base1

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_base1

protected

Definition at line 2085 of file IProductWRTDerivBase.cpp.

Referenced by operator()().

◆ m_base2

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_base2

protected

Definition at line 2086 of file IProductWRTDerivBase.cpp.

Referenced by operator()().

◆ m_derbase0

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_derbase0

protected

Definition at line 2087 of file IProductWRTDerivBase.cpp.

Referenced by operator()().

◆ m_derbase1

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_derbase1

protected

Definition at line 2088 of file IProductWRTDerivBase.cpp.

Referenced by operator()().

◆ m_derbase2

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_derbase2

protected

Definition at line 2089 of file IProductWRTDerivBase.cpp.

Referenced by operator()().

◆ m_derivFac

Array<TwoD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_derivFac

protected

Definition at line 2090 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_fac0

Array<OneD, NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_fac0

protected

Definition at line 2091 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_fac1

Array<OneD, NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_fac1

protected

Definition at line 2092 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_fac2

Array<OneD, NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_fac2

protected

Definition at line 2093 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_jacWStdW

Array<OneD, const NekDouble> Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_jacWStdW

protected

Definition at line 2083 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_nmodes0

const int Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_nmodes0

protected

Definition at line 2080 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_nmodes1

const int Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_nmodes1

protected

Definition at line 2081 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_nmodes2

const int Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_nmodes2

protected

Definition at line 2082 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_nquad0

const int Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_nquad0

protected

Definition at line 2077 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_nquad1

const int Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_nquad1

protected

Definition at line 2078 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_nquad2

const int Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_nquad2

protected

Definition at line 2079 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

◆ m_sortTopVertex

bool Nektar::Collections::IProductWRTDerivBase_SumFac_Pyr::m_sortTopVertex

protected

Definition at line 2094 of file IProductWRTDerivBase.cpp.

Referenced by IProductWRTDerivBase_SumFac_Pyr(), and operator()().

Public Member Functions

Protected Attributes

Private Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ ~IProductWRTDerivBase_SumFac_Pyr()

◆ IProductWRTDerivBase_SumFac_Pyr()

Member Function Documentation

◆ CheckFactors()

◆ operator()() [1/2]

◆ operator()() [2/2]

Member Data Documentation

◆ m_base0

◆ m_base1

◆ m_base2

◆ m_derbase0

◆ m_derbase1

◆ m_derbase2

◆ m_derivFac

◆ m_fac0

◆ m_fac1

◆ m_fac2

◆ m_jacWStdW

◆ m_nmodes0

◆ m_nmodes1

◆ m_nmodes2

◆ m_nquad0

◆ m_nquad1

◆ m_nquad2

◆ m_sortTopVertex