Nektar::Utilities::OutputVtk Class Reference

Converter from fld to vtk. More...

#include <OutputVtk.h>

Inheritance diagram for Nektar::Utilities::OutputVtk:

Collaboration diagram for Nektar::Utilities::OutputVtk:

Public Member Functions
	OutputVtk (FieldSharedPtr f)
virtual	~OutputVtk ()
virtual void	Process (po::variables_map &vm)
	Write fld to output file.
	OutputVtk (MeshSharedPtr m)
virtual	~OutputVtk ()
virtual void	Process ()
	Write mesh to output file.
Public Member Functions inherited from Nektar::Utilities::OutputModule
	OutputModule (FieldSharedPtr p_f)
void	OpenStream ()
	Open a file for output.
	OutputModule (MeshSharedPtr p_m)
void	OpenStream ()
Public Member Functions inherited from Nektar::Utilities::Module
	Module (FieldSharedPtr p_f)
void	RegisterConfig (string key, string value)
	Register a configuration option with a module.
void	PrintConfig ()
	Print out all configuration options for a module.
void	SetDefaults ()
	Sets default configuration options for those which have not been set.
bool	GetRequireEquiSpaced (void)
void	SetRequireEquiSpaced (bool pVal)
	Module (MeshSharedPtr p_m)
void	RegisterConfig (string key, string value)
void	PrintConfig ()
void	SetDefaults ()
MeshSharedPtr	GetMesh ()
virtual void	ProcessVertices ()
	Extract element vertices.

Static Public Member Functions
static boost::shared_ptr< Module >	create (FieldSharedPtr f)
	Creates an instance of this class.
static boost::shared_ptr< Module >	create (MeshSharedPtr m)
	Creates an instance of this class.

Static Public Attributes
static ModuleKey	m_className
static ModuleKey	className

Additional Inherited Members
Protected Member Functions inherited from Nektar::Utilities::Module
virtual void	ProcessEdges (bool ReprocessEdges=true)
	Extract element edges.
virtual void	ProcessFaces (bool ReprocessFaces=true)
	Extract element faces.
virtual void	ProcessElements ()
	Generate element IDs.
virtual void	ProcessComposites ()
	Generate composites.
void	ReorderPrisms (PerMap &perFaces)
	Reorder node IDs so that prisms and tetrahedra are aligned correctly.
void	PrismLines (int prism, PerMap &perFaces, set< int > &prismsDone, vector< ElementSharedPtr > &line)
Protected Attributes inherited from Nektar::Utilities::OutputModule
ofstream	m_fldFile
	Output stream.
std::ofstream	m_mshFile
	Output stream.

Detailed Description

Converter from fld to vtk.

Converter for Gmsh files.

Definition at line 47 of file PostProcessing/FieldConvert/OutputVtk.h.

Constructor & Destructor Documentation

Nektar::Utilities::OutputVtk::OutputVtk

(

FieldSharedPtr

f

)

Definition at line 51 of file PostProcessing/FieldConvert/OutputVtk.cpp.

References Nektar::Utilities::Module::m_requireEquiSpaced.

                                             : OutputModule(f)
        {
            m_requireEquiSpaced = true;
        }

Nektar::Utilities::OutputVtk::~OutputVtk ( )

virtual

Definition at line 56 of file PostProcessing/FieldConvert/OutputVtk.cpp.

        {
        }

Nektar::Utilities::OutputVtk::OutputVtk

(

MeshSharedPtr

m

)

Definition at line 57 of file PreProcessing/MeshConvert/OutputVtk.cpp.

                                            : OutputModule(m)
        {
            
        }

virtual Nektar::Utilities::OutputVtk::~OutputVtk ( )

virtual

Member Function Documentation

static boost::shared_ptr<Module> Nektar::Utilities::OutputVtk::create ( FieldSharedPtr  f )

inlinestatic

Creates an instance of this class.

Definition at line 51 of file PostProcessing/FieldConvert/OutputVtk.h.

                                                                    {
                return MemoryManager<OutputVtk>::AllocateSharedPtr(f);
            }

static boost::shared_ptr<Module> Nektar::Utilities::OutputVtk::create ( MeshSharedPtr  m )

inlinestatic

Creates an instance of this class.

Definition at line 51 of file PreProcessing/MeshConvert/OutputVtk.h.

                                                                   {
                return MemoryManager<OutputVtk>::AllocateSharedPtr(m);
            }

void Nektar::Utilities::OutputVtk::Process ( )

virtual

Write mesh to output file.

Implements Nektar::Utilities::Module.

Definition at line 67 of file PreProcessing/MeshConvert/OutputVtk.cpp.

References Nektar::iterator, Nektar::Utilities::Module::m_config, and Nektar::Utilities::Module::m_mesh.

        {
            if (m_mesh->m_verbose)
            {
                cout << "OutputVtk: Writing file..." << endl;
            }

            vtkPolyData *vtkMesh = vtkPolyData::New();
            vtkPoints *vtkPoints = vtkPoints::New();
            vtkCellArray *vtkPolys = vtkCellArray::New();

            std::set<NodeSharedPtr>::iterator it;

            std::set<NodeSharedPtr> tmp(
                    m_mesh->m_vertexSet.begin(),
                    m_mesh->m_vertexSet.end());

            for (it = tmp.begin(); it != tmp.end(); ++it)
            {
                NodeSharedPtr n = *it;
                vtkPoints->InsertPoint(n->m_id, n->m_x, n->m_y, n->m_z);
            }

            vtkIdType p[8];
            vector<ElementSharedPtr> &elmt = 
                                    m_mesh->m_element[m_mesh->m_expDim];
            for(int i = 0; i < elmt.size(); ++i)
            {
                int vertexCount = elmt[i]->GetVertexCount();
                for (int j = 0; j < vertexCount; ++j)
                {
                    p[j] = elmt[i]->GetVertex(j)->m_id;
                }
                vtkPolys->InsertNextCell(vertexCount, &p[0]);
            }

            vtkMesh->SetPoints(vtkPoints);
            vtkMesh->SetPolys(vtkPolys);

            // Write out the new mesh
            vtkPolyDataWriter *vtkMeshWriter = vtkPolyDataWriter::New();
            vtkMeshWriter->SetFileName(m_config["outfile"].as<string>().c_str());
#if VTK_MAJOR_VERSION <= 5
            vtkMeshWriter->SetInput(vtkMesh);
#else
            vtkMeshWriter->SetInputData(vtkMesh);
#endif
            vtkMeshWriter->Update();
        }        

void Nektar::Utilities::OutputVtk::Process ( po::variables_map &  vm )

virtual

Write fld to output file.

Implements Nektar::Utilities::Module.

Definition at line 60 of file PostProcessing/FieldConvert/OutputVtk.cpp.

References Nektar::Utilities::Module::m_config, and Nektar::Utilities::Module::m_f.

        {
            if(!m_f->m_exp.size()) // do nothing if no expansion defined
            {
                return; 
            }

            int i, j;
            if (m_f->m_verbose)
            {
                cout << "OutputVtk: Writing file..." << endl;
            }

            // Extract the output filename and extension
            string filename = m_config["outfile"].as<string>();
            
            // amend for parallel output if required 
            if(m_f->m_session->GetComm()->GetSize() != 1)
            {
                int    dot  = filename.find_last_of('.');
                string ext = filename.substr(dot,filename.length()-dot);
                string procId = "_P" + boost::lexical_cast<std::string>(m_f->m_session->GetComm()->GetRank());
                string start = filename.substr(0,dot);
                filename = start + procId + ext;
            }

            // Write solution.
            ofstream outfile(filename.c_str());
            m_f->m_exp[0]->WriteVtkHeader(outfile);
            
            // For each field write out field data for each expansion.
            for (i = 0; i < m_f->m_exp[0]->GetNumElmts(); ++i)
            {
                m_f->m_exp[0]->WriteVtkPieceHeader(outfile,i);
                // For this expansion write out each field.
                for (j = 0; j < m_f->m_fielddef[0]->m_fields.size(); ++j)
                {
                    m_f->m_exp[j]->WriteVtkPieceData(outfile, i, 
                                               m_f->m_fielddef[0]->m_fields[j]);
                }
                m_f->m_exp[0]->WriteVtkPieceFooter(outfile, i);
            }
            m_f->m_exp[0]->WriteVtkFooter(outfile);
            cout << "Written file: " << filename << endl;
        }        

Member Data Documentation

ModuleKey Nektar::Utilities::OutputVtk::className

static

Initial value:

            GetModuleFactory().RegisterCreatorFunction(
                ModuleKey(eOutputModule, "vtk"), OutputVtk::create,
                "Writes a VTK file.")

Definition at line 54 of file PreProcessing/MeshConvert/OutputVtk.h.

ModuleKey Nektar::Utilities::OutputVtk::m_className

static

Initial value:

            GetModuleFactory().RegisterCreatorFunction(
                ModuleKey(eOutputModule, "vtu"), OutputVtk::create,
                "Writes a VTU file.")

Definition at line 54 of file PostProcessing/FieldConvert/OutputVtk.h.