InputPts.cpp

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////////////////////////////////////////////////////////////////////////////////
//
//  File: InputPts.cpp
//
//  For more information, please see: http://www.nektar.info/
//
//  The MIT License
//
//  Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
//  Department of Aeronautics, Imperial College London (UK), and Scientific
//  Computing and Imaging Institute, University of Utah (USA).
//
//  License for the specific language governing rights and limitations under
//  Permission is hereby granted, free of charge, to any person obtaining a
//  copy of this software and associated documentation files (the "Software"),
//  to deal in the Software without restriction, including without limitation
//  the rights to use, copy, modify, merge, publish, distribute, sublicense,
//  and/or sell copies of the Software, and to permit persons to whom the
//  Software is furnished to do so, subject to the following conditions:
//
//  The above copyright notice and this permission notice shall be included
//  in all copies or substantial portions of the Software.
//
//  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
//  OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
//  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
//  THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
//  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
//  FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
//  DEALINGS IN THE SOFTWARE.
//
//  Description: Read xml file of a series of points and hold
//
////////////////////////////////////////////////////////////////////////////////

#include <string>
#include <iostream>
using namespace std;

#include <tinyxml.h>

#include "InputPts.h"

namespace Nektar
{
namespace Utilities
{

ModuleKey InputPts::m_className[5] = {
    GetModuleFactory().RegisterCreatorFunction(
        ModuleKey(eInputModule, "pts"), InputPts::create, "Reads Pts file."),
    GetModuleFactory().RegisterCreatorFunction(
        ModuleKey(eInputModule, "pts.gz"), InputPts::create, "Reads Pts file."),
};

/**
 * @brief Set up InputPts object.
 *
 */
InputPts::InputPts(FieldSharedPtr f) : InputModule(f)
{
    m_allowedFiles.insert("pts");
    f->m_fieldPts = MemoryManager<FieldPts>::AllocateSharedPtr();
}

InputPts::~InputPts()
{
}

/**
 *
 */
void InputPts::Process(po::variables_map &vm)
{
    if(m_f->m_verbose)
    {
        cout << "Processing input pts file" << endl;
    }

    string pts_ending = "pts";

    TiXmlDocument docInput;
    ASSERTL0(docInput.LoadFile((m_f->m_inputfiles["pts"][0]).c_str()),
             "Unable to open file '" + m_f->m_inputfiles["pts"][0] + "'.");

    TiXmlElement *nektar = docInput.FirstChildElement("NEKTAR");
    TiXmlElement *points = nektar->FirstChildElement("POINTS");
    int dim;
    int err = points->QueryIntAttribute("DIM", &dim);

    ASSERTL0(err == TIXML_SUCCESS, "Unable to read attribute DIM.");

    int nfields;
    std::string fields = points->Attribute("FIELDS");

    if(!fields.empty())
    {
        bool valid = ParseUtils::GenerateOrderedStringVector(
            fields.c_str(),m_f->m_fieldPts->m_fields);
        ASSERTL0(valid,"Unable to process list of field variable in "
                 " FIELDS attribute:  "+ fields);
    }

    nfields = m_f->m_fieldPts->m_nFields = m_f->m_fieldPts->m_fields.size();

    int totvars = dim + nfields;
    m_f->m_fieldPts->m_ptsDim  = dim;
    m_f->m_fieldPts->m_nFields = nfields;
    m_f->m_fieldPts->m_pts = Array<OneD, Array<OneD, NekDouble> >(totvars);

    TiXmlNode *pointsBody = points->FirstChild();

    std::istringstream pointsDataStrm(pointsBody->ToText()->Value());

    vector<NekDouble> pts;
    NekDouble      in_pts;
    try
    {
        while(!pointsDataStrm.fail())
        {
            pointsDataStrm >> in_pts;

            pts.push_back(in_pts);
        }
    }
    catch(...)
    {
        ASSERTL0(false, "Unable to read Points data.");
    }

    int npts = pts.size()/totvars;

    if(m_f->m_verbose)
    {
        cout << " Read " << npts << " points of dimension " << dim << " and "
             << nfields << " field variables" << endl;
    }

    for(int i = 0; i < totvars; ++i)
    {
        m_f->m_fieldPts->m_pts[i] = Array<OneD, NekDouble>(npts);
    }

    for(int i = 0; i < npts; ++i)
    {
        for(int j = 0; j < totvars; ++j)
        {
            m_f->m_fieldPts->m_pts[j][i] = pts[i*totvars +j];
        }
    }
}

}
}