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Nektar::ImageWarpingSystem Class Reference

#include <ImageWarpingSystem.h>

Inheritance diagram for Nektar::ImageWarpingSystem:
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Collaboration diagram for Nektar::ImageWarpingSystem:
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Public Member Functions

virtual ~ImageWarpingSystem ()
 
- Public Member Functions inherited from Nektar::SolverUtils::UnsteadySystem
virtual SOLVER_UTILS_EXPORT ~UnsteadySystem ()
 Destructor. More...
 
SOLVER_UTILS_EXPORT NekDouble GetTimeStep (const Array< OneD, const Array< OneD, NekDouble > > &inarray)
 Calculate the larger time-step mantaining the problem stable. More...
 
- Public Member Functions inherited from Nektar::SolverUtils::EquationSystem
virtual SOLVER_UTILS_EXPORT ~EquationSystem ()
 Destructor. More...
 
SOLVER_UTILS_EXPORT void SetUpTraceNormals (void)
 
SOLVER_UTILS_EXPORT void InitObject ()
 Initialises the members of this object. More...
 
SOLVER_UTILS_EXPORT void DoInitialise ()
 Perform any initialisation necessary before solving the problem. More...
 
SOLVER_UTILS_EXPORT void DoSolve ()
 Solve the problem. More...
 
SOLVER_UTILS_EXPORT void TransCoeffToPhys ()
 Transform from coefficient to physical space. More...
 
SOLVER_UTILS_EXPORT void TransPhysToCoeff ()
 Transform from physical to coefficient space. More...
 
SOLVER_UTILS_EXPORT void Output ()
 Perform output operations after solve. More...
 
SOLVER_UTILS_EXPORT NekDouble LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
 Linf error computation. More...
 
SOLVER_UTILS_EXPORT std::string GetSessionName ()
 Get Session name. More...
 
template<class T >
boost::shared_ptr< T > as ()
 
SOLVER_UTILS_EXPORT void ResetSessionName (std::string newname)
 Reset Session name. More...
 
SOLVER_UTILS_EXPORT LibUtilities::SessionReaderSharedPtr GetSession ()
 Get Session name. More...
 
SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr GetPressure ()
 Get pressure field if available. More...
 
SOLVER_UTILS_EXPORT void PrintSummary (std::ostream &out)
 Print a summary of parameters and solver characteristics. More...
 
SOLVER_UTILS_EXPORT void SetLambda (NekDouble lambda)
 Set parameter m_lambda. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (Array< OneD, Array< OneD, NekDouble > > &pArray, std::string pFunctionName, const NekDouble pTime=0.0, const int domain=0)
 Evaluates a function as specified in the session file. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (std::vector< std::string > pFieldNames, Array< OneD, Array< OneD, NekDouble > > &pFields, const std::string &pName, const int domain=0)
 Populate given fields with the function from session. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (std::vector< std::string > pFieldNames, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const std::string &pName, const int domain=0)
 Populate given fields with the function from session. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)
 
SOLVER_UTILS_EXPORT std::string DescribeFunction (std::string pFieldName, const std::string &pFunctionName, const int domain)
 Provide a description of a function for a given field name. More...
 
SOLVER_UTILS_EXPORT void InitialiseBaseFlow (Array< OneD, Array< OneD, NekDouble > > &base)
 Perform initialisation of the base flow. More...
 
SOLVER_UTILS_EXPORT void SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
 Initialise the data in the dependent fields. More...
 
SOLVER_UTILS_EXPORT void EvaluateExactSolution (int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
 Evaluates an exact solution. More...
 
SOLVER_UTILS_EXPORT NekDouble L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln, bool Normalised=false)
 Compute the L2 error between fields and a given exact solution. More...
 
SOLVER_UTILS_EXPORT NekDouble L2Error (unsigned int field, bool Normalised=false)
 Compute the L2 error of the fields. More...
 
SOLVER_UTILS_EXPORT Array< OneD, NekDoubleErrorExtraPoints (unsigned int field)
 Compute error (L2 and L_inf) over an larger set of quadrature points return [L2 Linf]. More...
 
SOLVER_UTILS_EXPORT void WeakAdvectionGreensDivergenceForm (const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)
 Compute the inner product $ (\nabla \phi \cdot F) $. More...
 
SOLVER_UTILS_EXPORT void WeakAdvectionDivergenceForm (const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)
 Compute the inner product $ (\phi, \nabla \cdot F) $. More...
 
SOLVER_UTILS_EXPORT void WeakAdvectionNonConservativeForm (const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, bool UseContCoeffs=false)
 Compute the inner product $ (\phi, V\cdot \nabla u) $. More...
 
f SOLVER_UTILS_EXPORT void AdvectionNonConservativeForm (const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wk=NullNekDouble1DArray)
 Compute the non-conservative advection. More...
 
SOLVER_UTILS_EXPORT void WeakDGAdvection (const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false, int nvariables=0)
 Calculate the weak discontinuous Galerkin advection. More...
 
SOLVER_UTILS_EXPORT void WeakDGDiffusion (const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false)
 Calculate weak DG Diffusion in the LDG form. More...
 
SOLVER_UTILS_EXPORT void Checkpoint_Output (const int n)
 Write checkpoint file of m_fields. More...
 
SOLVER_UTILS_EXPORT void Checkpoint_Output (const int n, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
 Write checkpoint file of custom data fields. More...
 
SOLVER_UTILS_EXPORT void Checkpoint_BaseFlow (const int n)
 Write base flow file of m_fields. More...
 
SOLVER_UTILS_EXPORT void WriteFld (const std::string &outname)
 Write field data to the given filename. More...
 
SOLVER_UTILS_EXPORT void WriteFld (const std::string &outname, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
 Write input fields to the given filename. More...
 
SOLVER_UTILS_EXPORT void ImportFld (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
 Input field data from the given file. More...
 
SOLVER_UTILS_EXPORT void ImportFldToMultiDomains (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const int ndomains)
 Input field data from the given file to multiple domains. More...
 
SOLVER_UTILS_EXPORT void ImportFld (const std::string &infile, std::vector< std::string > &fieldStr, Array< OneD, Array< OneD, NekDouble > > &coeffs)
 Output a field. Input field data into array from the given file. More...
 
SOLVER_UTILS_EXPORT void ImportFld (const std::string &infile, MultiRegions::ExpListSharedPtr &pField, std::string &pFieldName)
 Output a field. Input field data into ExpList from the given file. More...
 
SOLVER_UTILS_EXPORT void ScanForHistoryPoints ()
 Builds map of which element holds each history point. More...
 
SOLVER_UTILS_EXPORT void WriteHistoryData (std::ostream &out)
 Probe each history point and write to file. More...
 
SOLVER_UTILS_EXPORT void SessionSummary (SummaryList &vSummary)
 Write out a session summary. More...
 
SOLVER_UTILS_EXPORT Array< OneD, MultiRegions::ExpListSharedPtr > & UpdateFields ()
 
SOLVER_UTILS_EXPORT LibUtilities::FieldMetaDataMapUpdateFieldMetaDataMap ()
 Get hold of FieldInfoMap so it can be updated. More...
 
SOLVER_UTILS_EXPORT NekDouble GetFinalTime ()
 Return final time. More...
 
SOLVER_UTILS_EXPORT int GetNcoeffs ()
 
SOLVER_UTILS_EXPORT int GetNcoeffs (const int eid)
 
SOLVER_UTILS_EXPORT int GetNumExpModes ()
 
SOLVER_UTILS_EXPORT const Array< OneD, int > GetNumExpModesPerExp ()
 
SOLVER_UTILS_EXPORT int GetNvariables ()
 
SOLVER_UTILS_EXPORT const std::string GetVariable (unsigned int i)
 
SOLVER_UTILS_EXPORT int GetTraceTotPoints ()
 
SOLVER_UTILS_EXPORT int GetTraceNpoints ()
 
SOLVER_UTILS_EXPORT int GetExpSize ()
 
SOLVER_UTILS_EXPORT int GetPhys_Offset (int n)
 
SOLVER_UTILS_EXPORT int GetCoeff_Offset (int n)
 
SOLVER_UTILS_EXPORT int GetTotPoints ()
 
SOLVER_UTILS_EXPORT int GetTotPoints (int n)
 
SOLVER_UTILS_EXPORT int GetNpoints ()
 
SOLVER_UTILS_EXPORT int GetNumElmVelocity ()
 
SOLVER_UTILS_EXPORT int GetSteps ()
 
SOLVER_UTILS_EXPORT NekDouble GetTimeStep ()
 
SOLVER_UTILS_EXPORT void CopyFromPhysField (const int i, Array< OneD, NekDouble > &output)
 
SOLVER_UTILS_EXPORT void CopyToPhysField (const int i, Array< OneD, NekDouble > &output)
 
SOLVER_UTILS_EXPORT void SetStepsToOne ()
 
SOLVER_UTILS_EXPORT void ZeroPhysFields ()
 
SOLVER_UTILS_EXPORT void FwdTransFields ()
 
SOLVER_UTILS_EXPORT void GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)
 
SOLVER_UTILS_EXPORT void GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &fluxX, Array< OneD, Array< OneD, NekDouble > > &fluxY)
 
SOLVER_UTILS_EXPORT void GetFluxVector (const int i, const int j, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)
 
SOLVER_UTILS_EXPORT void NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)
 
SOLVER_UTILS_EXPORT void NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)
 
SOLVER_UTILS_EXPORT void NumFluxforScalar (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)
 
SOLVER_UTILS_EXPORT void NumFluxforVector (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)
 
SOLVER_UTILS_EXPORT void SetModifiedBasis (const bool modbasis)
 
SOLVER_UTILS_EXPORT int NoCaseStringCompare (const string &s1, const string &s2)
 Perform a case-insensitive string comparison. More...
 
virtual SOLVER_UTILS_EXPORT bool v_NegatedOp ()
 Virtual function to identify if operator is negated in DoSolve. More...
 

Static Public Member Functions

static EquationSystemSharedPtr create (const LibUtilities::SessionReaderSharedPtr &pSession)
 Creates an instance of this class. More...
 

Static Public Attributes

static std::string className
 Name of class. More...
 

Protected Member Functions

 ImageWarpingSystem (const LibUtilities::SessionReaderSharedPtr &pSession)
 
void DoOdeRhs (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
 
void DoOdeProjection (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
 
virtual void v_InitObject ()
 Init object for UnsteadySystem class. More...
 
virtual void v_GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)
 
virtual void v_NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)
 
virtual void v_GenerateSummary (SolverUtils::SummaryList &s)
 Print a summary of time stepping parameters. More...
 
- Protected Member Functions inherited from Nektar::SolverUtils::UnsteadySystem
SOLVER_UTILS_EXPORT UnsteadySystem (const LibUtilities::SessionReaderSharedPtr &pSession)
 Initialises UnsteadySystem class members. More...
 
SOLVER_UTILS_EXPORT NekDouble MaxTimeStepEstimator ()
 Get the maximum timestep estimator for cfl control. More...
 
virtual SOLVER_UTILS_EXPORT void v_DoSolve ()
 Solves an unsteady problem. More...
 
virtual SOLVER_UTILS_EXPORT void v_DoInitialise ()
 Sets up initial conditions. More...
 
virtual SOLVER_UTILS_EXPORT void v_AppendOutput1D (Array< OneD, Array< OneD, NekDouble > > &solution1D)
 Print the solution at each solution point in a txt file. More...
 
virtual SOLVER_UTILS_EXPORT void v_NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)
 
virtual SOLVER_UTILS_EXPORT void v_NumFluxforScalar (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)
 
virtual SOLVER_UTILS_EXPORT void v_NumFluxforVector (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)
 
virtual SOLVER_UTILS_EXPORT NekDouble v_GetTimeStep (const Array< OneD, const Array< OneD, NekDouble > > &inarray)
 Return the timestep to be used for the next step in the time-marching loop. More...
 
virtual SOLVER_UTILS_EXPORT bool v_PreIntegrate (int step)
 
virtual SOLVER_UTILS_EXPORT bool v_PostIntegrate (int step)
 
virtual SOLVER_UTILS_EXPORT bool v_SteadyStateCheck (int step)
 
SOLVER_UTILS_EXPORT void CheckForRestartTime (NekDouble &time)
 
- Protected Member Functions inherited from Nektar::SolverUtils::EquationSystem
SOLVER_UTILS_EXPORT EquationSystem (const LibUtilities::SessionReaderSharedPtr &pSession)
 Initialises EquationSystem class members. More...
 
int nocase_cmp (const string &s1, const string &s2)
 
SOLVER_UTILS_EXPORT void SetBoundaryConditions (NekDouble time)
 Evaluates the boundary conditions at the given time. More...
 
virtual SOLVER_UTILS_EXPORT NekDouble v_LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
 Virtual function for the L_inf error computation between fields and a given exact solution. More...
 
virtual SOLVER_UTILS_EXPORT NekDouble v_L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false)
 Virtual function for the L_2 error computation between fields and a given exact solution. More...
 
virtual SOLVER_UTILS_EXPORT void v_TransCoeffToPhys ()
 Virtual function for transformation to physical space. More...
 
virtual SOLVER_UTILS_EXPORT void v_TransPhysToCoeff ()
 Virtual function for transformation to coefficient space. More...
 
virtual SOLVER_UTILS_EXPORT void v_SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
 
virtual SOLVER_UTILS_EXPORT void v_EvaluateExactSolution (unsigned int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
 
SOLVER_UTILS_EXPORT void SetUpBaseFields (SpatialDomains::MeshGraphSharedPtr &mesh)
 
SOLVER_UTILS_EXPORT void ImportFldBase (std::string pInfile, SpatialDomains::MeshGraphSharedPtr pGraph)
 
virtual SOLVER_UTILS_EXPORT void v_Output (void)
 
virtual SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr v_GetPressure (void)
 
virtual SOLVER_UTILS_EXPORT void v_ExtraFldOutput (std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
 

Protected Attributes

Array< OneD, Array< OneD, NekDouble > > m_velocity
 
NekDouble m_alpha
 
- Protected Attributes inherited from Nektar::SolverUtils::UnsteadySystem
int m_infosteps
 Number of time steps between outputting status information. More...
 
LibUtilities::TimeIntegrationWrapperSharedPtr m_intScheme
 Wrapper to the time integration scheme. More...
 
LibUtilities::TimeIntegrationSchemeOperators m_ode
 The time integration scheme operators to use. More...
 
LibUtilities::TimeIntegrationSolutionSharedPtr m_intSoln
 
NekDouble m_epsilon
 
bool m_explicitDiffusion
 Indicates if explicit or implicit treatment of diffusion is used. More...
 
bool m_explicitAdvection
 Indicates if explicit or implicit treatment of advection is used. More...
 
bool m_explicitReaction
 Indicates if explicit or implicit treatment of reaction is used. More...
 
bool m_homoInitialFwd
 Flag to determine if simulation should start in homogeneous forward transformed state. More...
 
std::vector< int > m_intVariables
 
std::vector< FilterSharedPtrm_filters
 
- Protected Attributes inherited from Nektar::SolverUtils::EquationSystem
LibUtilities::CommSharedPtr m_comm
 Communicator. More...
 
LibUtilities::SessionReaderSharedPtr m_session
 The session reader. More...
 
LibUtilities::FieldIOSharedPtr m_fld
 Field input/output. More...
 
map< std::string, Array< OneD, Array< OneD, float > > > m_interpWeights
 Map of the interpolation weights for a specific filename. More...
 
map< std::string, Array< OneD, Array< OneD, unsigned int > > > m_interpInds
 Map of the interpolation indices for a specific filename. More...
 
Array< OneD, MultiRegions::ExpListSharedPtrm_fields
 Array holding all dependent variables. More...
 
Array< OneD, MultiRegions::ExpListSharedPtrm_base
 Base fields. More...
 
Array< OneD, MultiRegions::ExpListSharedPtrm_derivedfields
 Array holding all dependent variables. More...
 
SpatialDomains::BoundaryConditionsSharedPtr m_boundaryConditions
 Pointer to boundary conditions object. More...
 
SpatialDomains::MeshGraphSharedPtr m_graph
 Pointer to graph defining mesh. More...
 
std::string m_sessionName
 Name of the session. More...
 
NekDouble m_time
 Current time of simulation. More...
 
NekDouble m_fintime
 Finish time of the simulation. More...
 
NekDouble m_timestep
 Time step size. More...
 
NekDouble m_lambda
 Lambda constant in real system if one required. More...
 
NekDouble m_checktime
 Time between checkpoints. More...
 
int m_steps
 Number of steps to take. More...
 
int m_checksteps
 Number of steps between checkpoints. More...
 
int m_spacedim
 Spatial dimension (>= expansion dim). More...
 
int m_expdim
 Expansion dimension. More...
 
bool m_singleMode
 Flag to determine if single homogeneous mode is used. More...
 
bool m_halfMode
 Flag to determine if half homogeneous mode is used. More...
 
bool m_multipleModes
 Flag to determine if use multiple homogenenous modes are used. More...
 
bool m_useFFT
 Flag to determine if FFT is used for homogeneous transform. More...
 
bool m_homogen_dealiasing
 Flag to determine if dealiasing is used for homogeneous simulations. More...
 
bool m_specHP_dealiasing
 Flag to determine if dealisising is usde for the Spectral/hp element discretisation. More...
 
enum MultiRegions::ProjectionType m_projectionType
 Type of projection; e.g continuous or discontinuous. More...
 
Array< OneD, Array< OneD, NekDouble > > m_traceNormals
 Array holding trace normals for DG simulations in the forwards direction. More...
 
Array< OneD, Array< OneD, Array< OneD, NekDouble > > > m_gradtan
 1 x nvariable x nq More...
 
Array< OneD, Array< OneD, Array< OneD, NekDouble > > > m_tanbasis
 2 x m_spacedim x nq More...
 
Array< OneD, bool > m_checkIfSystemSingular
 Flag to indicate if the fields should be checked for singularity. More...
 
LibUtilities::FieldMetaDataMap m_fieldMetaDataMap
 Map to identify relevant solver info to dump in output fields. More...
 
int m_NumQuadPointsError
 Number of Quadrature points used to work out the error. More...
 
enum HomogeneousType m_HomogeneousType
 
NekDouble m_LhomX
 physical length in X direction (if homogeneous) More...
 
NekDouble m_LhomY
 physical length in Y direction (if homogeneous) More...
 
NekDouble m_LhomZ
 physical length in Z direction (if homogeneous) More...
 
int m_npointsX
 number of points in X direction (if homogeneous) More...
 
int m_npointsY
 number of points in Y direction (if homogeneous) More...
 
int m_npointsZ
 number of points in Z direction (if homogeneous) More...
 
int m_HomoDirec
 number of homogenous directions More...
 
int m_NumMode
 Mode to use in case of single mode analysis. More...
 

Friends

class MemoryManager< ImageWarpingSystem >
 

Additional Inherited Members

- Public Attributes inherited from Nektar::SolverUtils::UnsteadySystem
NekDouble m_cflSafetyFactor
 CFL safety factor (comprise between 0 to 1). More...
 
- Protected Types inherited from Nektar::SolverUtils::EquationSystem
enum  HomogeneousType { eHomogeneous1D, eHomogeneous2D, eHomogeneous3D, eNotHomogeneous }
 Parameter for homogeneous expansions. More...
 

Detailed Description

Definition at line 45 of file ImageWarpingSystem.h.

Constructor & Destructor Documentation

Nektar::ImageWarpingSystem::~ImageWarpingSystem ( )
virtual

Definition at line 91 of file ImageWarpingSystem.cpp.

92  {
93 
94  }
Nektar::ImageWarpingSystem::ImageWarpingSystem ( const LibUtilities::SessionReaderSharedPtr pSession)
protected

Definition at line 47 of file ImageWarpingSystem.cpp.

49  : UnsteadySystem(pSession)
50  {
51  }
SOLVER_UTILS_EXPORT UnsteadySystem(const LibUtilities::SessionReaderSharedPtr &pSession)
Initialises UnsteadySystem class members.

Member Function Documentation

static EquationSystemSharedPtr Nektar::ImageWarpingSystem::create ( const LibUtilities::SessionReaderSharedPtr pSession)
inlinestatic

Creates an instance of this class.

Definition at line 51 of file ImageWarpingSystem.h.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

52  {
54  p->InitObject();
55  return p;
56  }
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
boost::shared_ptr< EquationSystem > EquationSystemSharedPtr
A shared pointer to an EquationSystem object.
void Nektar::ImageWarpingSystem::DoOdeProjection ( const Array< OneD, const Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray,
const NekDouble  time 
)
protected

Definition at line 182 of file ImageWarpingSystem.cpp.

References ASSERTL0, Nektar::MultiRegions::eDiscontinuous, Nektar::SolverUtils::EquationSystem::GetNpoints(), Nektar::SolverUtils::EquationSystem::m_projectionType, Nektar::SolverUtils::EquationSystem::SetBoundaryConditions(), and Vmath::Vcopy().

Referenced by v_InitObject().

186  {
187  int i;
188  int nvariables = inarray.num_elements();
189  SetBoundaryConditions(time);
190 
191  switch(m_projectionType)
192  {
194  {
195  // Just copy over array
196  int npoints = GetNpoints();
197 
198  for(i = 0; i < nvariables; ++i)
199  {
200  Vmath::Vcopy(npoints,inarray[i],1,outarray[i],1);
201  }
202  }
203  break;
204  default:
205  ASSERTL0(false,"Unknown projection scheme");
206  break;
207  }
208  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
enum MultiRegions::ProjectionType m_projectionType
Type of projection; e.g continuous or discontinuous.
SOLVER_UTILS_EXPORT void SetBoundaryConditions(NekDouble time)
Evaluates the boundary conditions at the given time.
SOLVER_UTILS_EXPORT int GetNpoints()
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1038
void Nektar::ImageWarpingSystem::DoOdeRhs ( const Array< OneD, const Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray,
const NekDouble  time 
)
protected

Definition at line 96 of file ImageWarpingSystem.cpp.

References ASSERTL0, Nektar::MultiRegions::eDiscontinuous, Nektar::StdRegions::eFactorLambda, Nektar::SolverUtils::EquationSystem::GetNpoints(), m_alpha, Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_projectionType, Nektar::SolverUtils::EquationSystem::m_session, m_velocity, Vmath::Neg(), Nektar::NullFlagList, Vmath::Smul(), Vmath::Vmul(), Vmath::Vsub(), Vmath::Vvtvvtp(), and Nektar::SolverUtils::EquationSystem::WeakDGAdvection().

Referenced by v_InitObject().

100  {
101  int i;
102  int npoints = GetNpoints();
103  int ncoeffs = inarray[0].num_elements();
105 
106  // Load parameter alpha.
107  m_session->LoadParameter("Alpha", m_alpha);
108 
110  "CG not implemented yet.");
111 
112  // Set up storage arrays.
113  Array<OneD, NekDouble> alloc(3*npoints);
114  Array<OneD, NekDouble> dIdx1(alloc);
115  Array<OneD, NekDouble> dIdx2(alloc+npoints);
116  Array<OneD, NekDouble> dIdx3(alloc+2*npoints);
119 
120  // Calculate grad I.
121  m_fields[0]->PhysDeriv(inarray[0], dIdx1, dIdx2);
122 
123  // Set factors.
124  // TODO: Check - should be -1?
125  factors[StdRegions::eFactorLambda] = 1.0 / m_alpha / m_alpha;
126 
127  // Multiply by phi, and perform Helmholtz solve to calculate the
128  // advection velocity field.
129  for (i = 0; i < 2; ++i)
130  {
131  Vmath::Vmul(npoints, &alloc[i*npoints], 1, inarray[1].get(), 1,
132  m_fields[i+2]->UpdatePhys().get(), 1);
133  Vmath::Smul(npoints, 1/m_alpha/m_alpha, m_fields[i+2]->GetPhys().get(), 1,
134  m_fields[i+2]->UpdatePhys().get(), 1);
135  m_fields[i+2]->HelmSolve(m_fields[i+2]->GetPhys(),
136  m_fields[i+2]->UpdateCoeffs(),
137  NullFlagList, factors);
138  m_fields[i+2]->BwdTrans(m_fields[i+2]->GetCoeffs(),
139  m_velocity[i]);
140  }
141 
142  // Set up arrays for weak advection output.
143  WeakAdv[0] = Array<OneD, NekDouble>(2*ncoeffs);
144  WeakAdv[1] = WeakAdv[0]+ncoeffs;
145 
146  // Calculate the weak advection operator for I and phi - result is put
147  // in WeakAdv and is in coefficient space.
148  WeakDGAdvection(inarray, WeakAdv, true, true, 2);
149 
150  // Calculate du/dx -> dIdx1, dv/dy -> dIdx2.
151  m_fields[2]->PhysDeriv(m_velocity[0], dIdx1, dIdx3);
152  m_fields[3]->PhysDeriv(m_velocity[1], dIdx3, dIdx2);
153 
154  // Calculate RHS = I*div(u) = I*du/dx + I*dv/dy -> dIdx1.
155  Vmath::Vvtvvtp(npoints, dIdx1.get(), 1, inarray[0].get(), 1,
156  dIdx2.get(), 1, inarray[0].get(), 1,
157  dIdx1.get(), 1);
158 
159  // Take inner product to get to coefficient space.
160  Array<OneD, NekDouble> tmp2(ncoeffs);
161  m_fields[0]->IProductWRTBase(dIdx1, tmp2);
162 
163  // Add this to the weak advection for intensity field
164  // equation.
165  Vmath::Vsub(npoints, WeakAdv[0], 1, tmp2, 1, WeakAdv[0], 1);
166 
167  // Multiply by elemental inverse mass matrix, backwards transform and
168  // negate (to put on RHS of ODE).
169  for(i = 0; i < 2; ++i)
170  {
171  m_fields[i]->MultiplyByElmtInvMass(WeakAdv[i], WeakAdv[i]);
172  m_fields[i]->BwdTrans(WeakAdv[i],outarray[i]);
173  Vmath::Neg(npoints,outarray[i],1);
174  }
175  }
Array< OneD, Array< OneD, NekDouble > > m_velocity
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
enum MultiRegions::ProjectionType m_projectionType
Type of projection; e.g continuous or discontinuous.
std::map< ConstFactorType, NekDouble > ConstFactorMap
Definition: StdRegions.hpp:248
void Smul(int n, const T alpha, const T *x, const int incx, T *y, const int incy)
Scalar multiply y = alpha*y.
Definition: Vmath.cpp:199
void Neg(int n, T *x, const int incx)
Negate x = -x.
Definition: Vmath.cpp:382
void Vsub(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Subtract vector z = x-y.
Definition: Vmath.cpp:329
SOLVER_UTILS_EXPORT int GetNpoints()
void Vvtvvtp(int n, const T *v, int incv, const T *w, int incw, const T *x, int incx, const T *y, int incy, T *z, int incz)
vvtvvtp (vector times vector plus vector times vector):
Definition: Vmath.cpp:523
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
LibUtilities::SessionReaderSharedPtr m_session
The session reader.
SOLVER_UTILS_EXPORT void WeakDGAdvection(const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false, int nvariables=0)
Calculate the weak discontinuous Galerkin advection.
void Vmul(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Multiply vector z = x*y.
Definition: Vmath.cpp:169
static FlagList NullFlagList
An empty flag list.
void Nektar::ImageWarpingSystem::v_GenerateSummary ( SolverUtils::SummaryList s)
protectedvirtual

Print a summary of time stepping parameters.

Prints a summary with some information regards the time-stepping.

Reimplemented from Nektar::SolverUtils::UnsteadySystem.

Definition at line 253 of file ImageWarpingSystem.cpp.

254  {
255  UnsteadySystem::v_GenerateSummary(s);
256  }
void Nektar::ImageWarpingSystem::v_GetFluxVector ( const int  i,
Array< OneD, Array< OneD, NekDouble > > &  physfield,
Array< OneD, Array< OneD, NekDouble > > &  flux 
)
protectedvirtual

Reimplemented from Nektar::SolverUtils::EquationSystem.

Definition at line 211 of file ImageWarpingSystem.cpp.

References Nektar::SolverUtils::EquationSystem::GetNpoints(), m_velocity, and Vmath::Vmul().

215  {
216  for(int j = 0; j < flux.num_elements(); ++j)
217  {
218  Vmath::Vmul(GetNpoints(),physfield[i],1,
219  m_velocity[j],1,flux[j],1);
220  }
221  }
Array< OneD, Array< OneD, NekDouble > > m_velocity
SOLVER_UTILS_EXPORT int GetNpoints()
void Vmul(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Multiply vector z = x*y.
Definition: Vmath.cpp:169
void Nektar::ImageWarpingSystem::v_InitObject ( )
protectedvirtual

Init object for UnsteadySystem class.

Initialization object for UnsteadySystem class.

Reimplemented from Nektar::SolverUtils::UnsteadySystem.

Definition at line 53 of file ImageWarpingSystem.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), ASSERTL0, Nektar::LibUtilities::TimeIntegrationSchemeOperators::DefineOdeRhs(), Nektar::LibUtilities::TimeIntegrationSchemeOperators::DefineProjection(), DoOdeProjection(), DoOdeRhs(), Nektar::SolverUtils::UnsteadySystem::m_explicitAdvection, Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_graph, Nektar::SolverUtils::UnsteadySystem::m_intVariables, Nektar::SolverUtils::UnsteadySystem::m_ode, Nektar::SolverUtils::EquationSystem::m_session, Nektar::SolverUtils::EquationSystem::m_spacedim, and m_velocity.

54  {
55  UnsteadySystem::v_InitObject();
56 
57  // Define Velocity fields
59  int nq = m_fields[0]->GetNpoints();
60 
61  for(int i = 0; i < m_spacedim; ++i)
62  {
63  m_velocity[i] = Array<OneD, NekDouble> (nq,0.0);
64  }
65 
66  // Bit of a hack: redefine u/v fields so they are continuous for
67  // Helmholtz solve.
71  m_fields[2] = fld;
73  ::AllocateSharedPtr(*fld,m_graph,m_session->GetVariable(3));
74 
75  // Tell UnsteadySystem to only integrate first two fields (i.e. I and
76  // phi).
77  m_intVariables.push_back(0);
78  m_intVariables.push_back(1);
79 
81  {
84  }
85  else
86  {
87  ASSERTL0(false, "Implicit unsteady Advection not set up.");
88  }
89  }
Array< OneD, Array< OneD, NekDouble > > m_velocity
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
void DoOdeRhs(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
LibUtilities::TimeIntegrationSchemeOperators m_ode
The time integration scheme operators to use.
boost::shared_ptr< ContField2D > ContField2DSharedPtr
Definition: ContField2D.h:291
void DefineProjection(FuncPointerT func, ObjectPointerT obj)
bool m_explicitAdvection
Indicates if explicit or implicit treatment of advection is used.
void DefineOdeRhs(FuncPointerT func, ObjectPointerT obj)
int m_spacedim
Spatial dimension (>= expansion dim).
void DoOdeProjection(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
LibUtilities::SessionReaderSharedPtr m_session
The session reader.
SpatialDomains::MeshGraphSharedPtr m_graph
Pointer to graph defining mesh.
void Nektar::ImageWarpingSystem::v_NumericalFlux ( Array< OneD, Array< OneD, NekDouble > > &  physfield,
Array< OneD, Array< OneD, NekDouble > > &  numflux 
)
protectedvirtual

Reimplemented from Nektar::SolverUtils::UnsteadySystem.

Definition at line 223 of file ImageWarpingSystem.cpp.

References Nektar::SolverUtils::EquationSystem::GetTraceNpoints(), Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_spacedim, Nektar::SolverUtils::EquationSystem::m_traceNormals, m_velocity, Vmath::Vmul(), and Vmath::Vvtvp().

226  {
227  int i;
228 
229  int nTraceNumPoints = GetTraceNpoints();
230  int nvel = m_spacedim; //m_velocity.num_elements();
231 
232  Array<OneD, NekDouble > Fwd(nTraceNumPoints);
233  Array<OneD, NekDouble > Bwd(nTraceNumPoints);
234  Array<OneD, NekDouble > Vn (nTraceNumPoints,0.0);
235 
236  // Get Edge Velocity
237  for(i = 0; i < nvel; ++i)
238  {
239  m_fields[0]->ExtractTracePhys(m_velocity[i], Fwd);
240  Vmath::Vvtvp(nTraceNumPoints,m_traceNormals[i],1,Fwd,1,Vn,1,Vn,1);
241  }
242 
243  for(i = 0; i < numflux.num_elements(); ++i)
244  {
245  m_fields[i]->GetFwdBwdTracePhys(physfield[i],Fwd,Bwd);
246  // Evaulate upwinded m_fields[i]
247  m_fields[i]->GetTrace()->Upwind(Vn,Fwd,Bwd,numflux[i]);
248  // Calculate m_fields[i]*Vn
249  Vmath::Vmul(nTraceNumPoints,numflux[i],1,Vn,1,numflux[i],1);
250  }
251  }
Array< OneD, Array< OneD, NekDouble > > m_velocity
void Vvtvp(int n, const T *w, const int incw, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
vvtvp (vector times vector plus vector): z = w*x + y
Definition: Vmath.cpp:428
Array< OneD, Array< OneD, NekDouble > > m_traceNormals
Array holding trace normals for DG simulations in the forwards direction.
int m_spacedim
Spatial dimension (>= expansion dim).
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
SOLVER_UTILS_EXPORT int GetTraceNpoints()
void Vmul(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Multiply vector z = x*y.
Definition: Vmath.cpp:169

Friends And Related Function Documentation

friend class MemoryManager< ImageWarpingSystem >
friend

Definition at line 48 of file ImageWarpingSystem.h.

Member Data Documentation

string Nektar::ImageWarpingSystem::className
static
Initial value:
=
"ImageWarpingSystem",
"Image warping system.")

Name of class.

Definition at line 58 of file ImageWarpingSystem.h.

NekDouble Nektar::ImageWarpingSystem::m_alpha
protected

Definition at line 64 of file ImageWarpingSystem.h.

Referenced by DoOdeRhs().

Array<OneD, Array<OneD, NekDouble> > Nektar::ImageWarpingSystem::m_velocity
protected

Definition at line 63 of file ImageWarpingSystem.h.

Referenced by DoOdeRhs(), v_GetFluxVector(), v_InitObject(), and v_NumericalFlux().