NekMesh/Module.h

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////////////////////////////////////////////////////////////////////////////////
//
//  File: Module.h
//
//  For more information, please see: http://www.nektar.info/
//
//  The MIT License
//
//  Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
//  Department of Aeronautics, Imperial College London (UK), and Scientific
//  Computing and Imaging Institute, University of Utah (USA).
//
//  License for the specific language governing rights and limitations under
//  Permission is hereby granted, free of charge, to any person obtaining a
//  copy of this software and associated documentation files (the "Software"),
//  to deal in the Software without restriction, including without limitation
//  the rights to use, copy, modify, merge, publish, distribute, sublicense,
//  and/or sell copies of the Software, and to permit persons to whom the
//  Software is furnished to do so, subject to the following conditions:
//
//  The above copyright notice and this permission notice shall be included
//  in all copies or substantial portions of the Software.
//
//  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
//  OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
//  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
//  THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
//  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
//  FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
//  DEALINGS IN THE SOFTWARE.
//
//  Description: Mesh converter module base classes.
//
////////////////////////////////////////////////////////////////////////////////

#ifndef UTILITIES_NEKMESH_MODULE
#define UTILITIES_NEKMESH_MODULE

#include <map>
#include <vector>
#include <sstream>
#include <string>
#include <iostream>
#include <fstream>
#include <set>

#include <LibUtilities/BasicUtils/NekFactory.hpp>
#include <NekMeshUtils/MeshElements/Mesh.h>

using namespace Nektar::NekMeshUtils;

namespace Nektar
{
    namespace Utilities
    {
        /**
         * Denotes different types of mesh converter modules: so far only
         * input, output and process modules are defined.
         */
        enum ModuleType {
            eInputModule,
            eProcessModule,
            eOutputModule,
            SIZE_ModuleType
        };

        const char* const ModuleTypeMap[] =
        {
            "Input",
            "Process",
            "Output"
        };

        typedef map<int, pair<FaceSharedPtr, vector<int> > > PerMap;

        /**
         * @brief Represents a command-line configuration option.
         */
        struct ConfigOption
        {
            /**
             * @brief Construct a new configuration option.
             *
             * @param isBool    True if the option is boolean type.
             * @param defValue  Default value of the option.
             * @param desc      Description of the option.
             */
            ConfigOption(bool isBool, string defValue, string desc) :
                isBool(isBool), beenSet(false), value(), defValue(defValue),
                desc(desc) {}
            ConfigOption() :
                isBool(false), beenSet(false), value(), defValue(), desc() {}

            /**
             * @brief Re-interpret the value stored in #value as some type using
             * boost::lexical_cast.
             */
            template<typename T>
            T as()
            {
                try
                {
                    return boost::lexical_cast<T>(value);
                }
                catch(const std::exception &e)
                {
                    std::cerr << e.what() << std::endl;
                    abort();
                }
            }

            /**
             * @brief Interpret the value stored in #value as some type using
             * boost::lexical_cast and return true of false depending on cast
             */
            template<typename T>
            bool isType()
            {
                bool returnval = true;
                try
                {
                    boost::lexical_cast<T>(value);
                }
                catch(const std::exception &e)
                {
                    returnval = false;
                }

                return returnval;
            }


            /// True if the configuration option is a boolean (thus does not
            /// need additional arguments).
            bool   isBool;
            /// True if the configuration option has been set at command
            /// line. If false, the default value will be put into #value.
            bool   beenSet;
            /// The value of the configuration option.
            string value;
            /// Default value of the configuration option.
            string defValue;
            /// Description of the configuration option.
            string desc;
        };


        /**
         * Abstract base class for mesh converter modules. Each subclass
         * implements the Process() function, which in some way alters the
         * mesh #m.
         */
        class Module
        {
        public:
        Module(MeshSharedPtr p_m) : m_mesh(p_m) {}
            virtual void Process() = 0;

            void RegisterConfig(string key, string value);
            void PrintConfig();
            void SetDefaults();
            MeshSharedPtr GetMesh()
            {
                return m_mesh;
            }

            /// Extract element vertices
            virtual void ProcessVertices();
            /// Extract element edges
            virtual void ProcessEdges(bool ReprocessEdges = true);
            /// Extract element faces
            virtual void ProcessFaces(bool ReprocessFaces = true);
            /// Generate element IDs
            virtual void ProcessElements();
            /// Generate composites
            virtual void ProcessComposites();

            virtual void ClearElementLinks();

        protected:
            /// Mesh object
            MeshSharedPtr m_mesh;
            /// List of configuration values.
            map<string, ConfigOption> m_config;



            void ReorderPrisms(PerMap                   &perFaces);
            void PrismLines   (int                       prism,
                               PerMap                   &perFaces,
                               set<int>                 &prismsDone,
                               vector<ElementSharedPtr> &line);
        };

        /**
         * @brief Abstract base class for input modules.
         *
         * Input modules should read the contents of #m_mshFile in the Process()
         * function and populate the members of #m. Typically any given module
         * should populate Mesh::expDim, Mesh::spaceDim, Mesh::node and
         * Mesh::element, then call the protected ProcessX functions to
         * generate edges, faces, etc.
         */
        class InputModule : public Module
        {
        public:
            InputModule(MeshSharedPtr p_m);
            void OpenStream();

        protected:
            /// Print summary of elements.
            void         PrintSummary();
            /// Input stream
            std::ifstream m_mshFile;
        };

        /**
         * @brief Abstract base class for processing modules.
         *
         * Processing modules take a populated %Mesh object and process it in
         * some fashion; for example the %ProcessJac module calculates the
         * Jacobian of each element and prints warnings for non-positive
         * elements.
         */
        class ProcessModule : public Module
        {
        public:
            ProcessModule(MeshSharedPtr p_m) : Module(p_m) {}
        };

        /**
         * @brief Abstract base class for output modules.
         *
         * Output modules take the mesh #m and write to the file specified by
         * the stream #m_mshFile.
         */
        class OutputModule : public Module
        {
        public:
            OutputModule(MeshSharedPtr p_m);
            void OpenStream();


        protected:
            /// Output stream
            std::ofstream m_mshFile;
        };

        typedef std::pair<ModuleType,std::string> ModuleKey;
        std::ostream& operator<<(std::ostream& os, const ModuleKey& rhs);

        typedef boost::shared_ptr<Module> ModuleSharedPtr;
        typedef LibUtilities::NekFactory< ModuleKey, Module, MeshSharedPtr > ModuleFactory;

        ModuleFactory& GetModuleFactory();
    }
}

#endif