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Protocol.h
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1 ///////////////////////////////////////////////////////////////////////////////
2 //
3 // File Protocol.h
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7 // Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
8 // Department of Aeronautics, Imperial College London (UK), and Scientific
9 // Computing and Imaging Institute, University of Utah (USA).
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29 //
30 // Description: Stimulus protocol base class.
31 //
32 ///////////////////////////////////////////////////////////////////////////////
33 
34 #ifndef NEKTAR_SOLVERS_CARDIACEPSOLVER_STIMULI_PROTOCOL
35 #define NEKTAR_SOLVERS_CARDIACEPSOLVER_STIMULI_PROTOCOL
36 
40 #include <SolverUtils/Core/Misc.h>
41 
42 namespace Nektar
43 {
44  // Forward declaration
45  class Protocol;
46 
47  /// A shared pointer to an EquationSystem object
48  typedef boost::shared_ptr<Protocol> ProtocolSharedPtr;
49 
50  /// Datatype of the NekFactory used to instantiate classes derived from
51  /// the EquationSystem class.
52  typedef LibUtilities::NekFactory< std::string, Protocol,
54  const TiXmlElement*> ProtocolFactory;
55 
56  ProtocolFactory& GetProtocolFactory();
57 
58 
59  /// Protocol base class.
60  class Protocol
61  {
62  public:
63  virtual ~Protocol() {}
64 
65  /// Initialise the protocol storage and set initial conditions
66  void Initialise();
67 
68  /// Returns amplitude of stimulus (1 or 0) at given time
70  {
71  return v_GetAmplitude(time);
72  }
73 
74  /// Print a summary of the cell model
76  {
78  }
79 
80  protected:
81  /// Session
82  LibUtilities::SessionReaderSharedPtr m_session;
83 
84  Protocol(const LibUtilities::SessionReaderSharedPtr& pSession,
85  const TiXmlElement* pXml);
86 
87  virtual NekDouble v_GetAmplitude(const NekDouble time) = 0;
88 
89  virtual void v_GenerateSummary(SolverUtils::SummaryList& s) = 0;
90 
91  };
92 
93 }
94 
95 #endif /*PROTOCOL_H_ */
void Initialise()
Initialise the protocol storage and set initial conditions.
Definition: Protocol.cpp:71
std::vector< std::pair< std::string, std::string > > SummaryList
Definition: Misc.h:47
virtual ~Protocol()
Definition: Protocol.h:63
ProtocolFactory & GetProtocolFactory()
Definition: Protocol.cpp:40
Protocol(const LibUtilities::SessionReaderSharedPtr &pSession, const TiXmlElement *pXml)
Definition: Protocol.cpp:61
void GenerateSummary(SolverUtils::SummaryList &s)
Print a summary of the cell model.
Definition: Protocol.h:75
boost::shared_ptr< SessionReader > SessionReaderSharedPtr
Definition: MeshPartition.h:51
NekDouble GetAmplitude(const NekDouble time)
Returns amplitude of stimulus (1 or 0) at given time.
Definition: Protocol.h:69
LibUtilities::SessionReaderSharedPtr m_session
Session.
Definition: Protocol.h:82
boost::shared_ptr< Protocol > ProtocolSharedPtr
A shared pointer to an EquationSystem object.
Definition: Protocol.h:45
virtual NekDouble v_GetAmplitude(const NekDouble time)=0
virtual void v_GenerateSummary(SolverUtils::SummaryList &s)=0
double NekDouble
Protocol base class.
Definition: Protocol.h:60
LibUtilities::NekFactory< std::string, Protocol, const LibUtilities::SessionReaderSharedPtr &, const TiXmlElement * > ProtocolFactory
Datatype of the NekFactory used to instantiate classes derived from the EquationSystem class...
Definition: Protocol.h:54
Provides a generic Factory class.
Definition: NekFactory.hpp:116