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Nektar::Utilities::InputGmsh Class Reference

#include <InputGmsh.h>

Inheritance diagram for Nektar::Utilities::InputGmsh:
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Collaboration diagram for Nektar::Utilities::InputGmsh:
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Public Member Functions

 InputGmsh (MeshSharedPtr m)
 Set up InputGmsh object. More...
 
virtual ~InputGmsh ()
 
virtual void Process ()
 
- Public Member Functions inherited from Nektar::Utilities::InputModule
 InputModule (FieldSharedPtr p_m)
 
void AddFile (string fileType, string fileName)
 
 InputModule (MeshSharedPtr p_m)
 
void OpenStream ()
 Open a file for input. More...
 
- Public Member Functions inherited from Nektar::Utilities::Module
 Module (FieldSharedPtr p_f)
 
virtual void Process (po::variables_map &vm)=0
 
virtual std::string GetModuleName ()=0
 
void RegisterConfig (string key, string value)
 Register a configuration option with a module. More...
 
void PrintConfig ()
 Print out all configuration options for a module. More...
 
void SetDefaults ()
 Sets default configuration options for those which have not been set. More...
 
bool GetRequireEquiSpaced (void)
 
void SetRequireEquiSpaced (bool pVal)
 
void EvaluateTriFieldAtEquiSpacedPts (LocalRegions::ExpansionSharedPtr &exp, const Array< OneD, const NekDouble > &infield, Array< OneD, NekDouble > &outfield)
 
 Module (MeshSharedPtr p_m)
 
void RegisterConfig (std::string key, std::string value)
 
void PrintConfig ()
 
void SetDefaults ()
 
MeshSharedPtr GetMesh ()
 
virtual void ProcessVertices ()
 Extract element vertices. More...
 
virtual void ProcessEdges (bool ReprocessEdges=true)
 Extract element edges. More...
 
virtual void ProcessFaces (bool ReprocessFaces=true)
 Extract element faces. More...
 
virtual void ProcessElements ()
 Generate element IDs. More...
 
virtual void ProcessComposites ()
 Generate composites. More...
 
virtual void ClearElementLinks ()
 

Static Public Member Functions

static ModuleSharedPtr create (MeshSharedPtr m)
 Creates an instance of this class. More...
 
static std::map< unsigned int,
ElmtConfig > 		GenElmMap ()
 

Static Public Attributes

static ModuleKey className
 ModuleKey for class. More...
 
static std::map< unsigned int,
ElmtConfig > 		elmMap = InputGmsh::GenElmMap()
 

Private Member Functions

int GetNnodes (unsigned int InputGmshEntity)
 
std::vector< int > CreateReordering (unsigned int InputGmshEntity)
 Create a reordering map for a given element. More...
 
std::vector< int > TriReordering (ElmtConfig conf)
 Create a reordering for triangles. More...
 
std::vector< int > QuadReordering (ElmtConfig conf)
 Create a reordering for quadrilaterals. More...
 
std::vector< int > HexReordering (ElmtConfig conf)
 Create a reordering for hexahedra. More...
 
std::vector< int > PrismReordering (ElmtConfig conf)
 Create a reordering for prisms. More...
 
std::vector< int > TetReordering (ElmtConfig conf)
 Create a reordering for tetrahedra. More...
 

Additional Inherited Members

- Protected Member Functions inherited from Nektar::Utilities::InputModule
void PrintSummary ()
 Print summary of elements. More...
 
void PrintSummary ()
 Print summary of elements. More...
 
- Protected Member Functions inherited from Nektar::Utilities::Module
 Module ()
 
void ReorderPrisms (PerMap &perFaces)
 Reorder node IDs so that prisms and tetrahedra are aligned correctly. More...
 
void PrismLines (int prism, PerMap &perFaces, std::set< int > &prismsDone, std::vector< ElementSharedPtr > &line)
 
- Protected Attributes inherited from Nektar::Utilities::InputModule
set< string > m_allowedFiles
 
std::ifstream m_mshFile
 Input stream. More...
 
- Protected Attributes inherited from Nektar::Utilities::Module
FieldSharedPtr m_f
 Field object. More...
 
map< string, ConfigOption > m_config
 List of configuration values. More...
 
bool m_requireEquiSpaced
 
MeshSharedPtr m_mesh
 Mesh object. More...
 
std::map< std::string,
ConfigOption > 		m_config
 List of configuration values. More...
 

Detailed Description

Converter for Gmsh files.

Definition at line 49 of file InputGmsh.h.

Constructor & Destructor Documentation

Nektar::Utilities::InputGmsh::InputGmsh ( MeshSharedPtr  m)

Set up InputGmsh object.

Definition at line 171 of file InputGmsh.cpp.

171  : InputModule(m)
172 {
173 }
Nektar::Utilities::InputGmsh::~InputGmsh ( )
virtual

Definition at line 175 of file InputGmsh.cpp.

176 {
177 }

Member Function Documentation

static ModuleSharedPtr Nektar::Utilities::InputGmsh::create ( MeshSharedPtr  m)
inlinestatic

Creates an instance of this class.

Definition at line 57 of file InputGmsh.h.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

58  {
59  return MemoryManager<InputGmsh>::AllocateSharedPtr(m);
60  }
Nektar::MemoryManager::AllocateSharedPtr
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
Definition: NekMemoryManager.hpp:235
vector< int > Nektar::Utilities::InputGmsh::CreateReordering ( unsigned int  InputGmshEntity)
private

Create a reordering map for a given element.

Since Gmsh and Nektar++ have different vertex, edge and face orientations, we need to reorder the nodes in a Gmsh MSH file so that they work with the Nektar++ orderings, since this is what is used in the elements defined in the converter.

Definition at line 482 of file InputGmsh.cpp.

References Nektar::LibUtilities::eHexahedron, elmMap, Nektar::LibUtilities::ePrism, Nektar::LibUtilities::eQuadrilateral, Nektar::LibUtilities::eTetrahedron, Nektar::LibUtilities::eTriangle, HexReordering(), Nektar::iterator, PrismReordering(), QuadReordering(), TetReordering(), and TriReordering().

Referenced by Process().

483 {
484  map<unsigned int, ElmtConfig>::iterator it;
485 
486  it = elmMap.find(InputGmshEntity);
487 
488  if (it == elmMap.end())
489  {
490  cerr << "Unknown element type " << InputGmshEntity << endl;
491  abort();
492  }
493 
494  // For specific elements, call the appropriate function to perform
495  // the renumbering.
496  switch (it->second.m_e)
497  {
498  case LibUtilities::eTriangle:
499  return TriReordering(it->second);
500  break;
501  case LibUtilities::eQuadrilateral:
502  return QuadReordering(it->second);
503  break;
504  case LibUtilities::eTetrahedron:
505  return TetReordering(it->second);
506  break;
507  case LibUtilities::ePrism:
508  return PrismReordering(it->second);
509  break;
510  case LibUtilities::eHexahedron:
511  return HexReordering(it->second);
512  break;
513  default:
514  break;
515  }
516 
517  // Default: no reordering.
518  vector<int> returnVal;
519  return returnVal;
520 }
Nektar::Utilities::InputGmsh::HexReordering
std::vector< int > HexReordering(ElmtConfig conf)
Create a reordering for hexahedra.
Definition: InputGmsh.cpp:817
Nektar::Utilities::InputGmsh::TriReordering
std::vector< int > TriReordering(ElmtConfig conf)
Create a reordering for triangles.
Definition: InputGmsh.cpp:525
Nektar::Utilities::InputGmsh::QuadReordering
std::vector< int > QuadReordering(ElmtConfig conf)
Create a reordering for quadrilaterals.
Definition: InputGmsh.cpp:574
Nektar::Utilities::InputGmsh::PrismReordering
std::vector< int > PrismReordering(ElmtConfig conf)
Create a reordering for prisms.
Definition: InputGmsh.cpp:742
Nektar::iterator
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
Definition: MatrixOperations.cpp:96
Nektar::Utilities::InputGmsh::TetReordering
std::vector< int > TetReordering(ElmtConfig conf)
Create a reordering for tetrahedra.
Definition: InputGmsh.cpp:622
Nektar::Utilities::InputGmsh::elmMap
static std::map< unsigned int, ElmtConfig > elmMap
Definition: InputGmsh.h:68
std::map< unsigned int, ElmtConfig > Nektar::Utilities::InputGmsh::GenElmMap ( )
static

Definition at line 964 of file InputGmsh.cpp.

References Nektar::LibUtilities::eHexahedron, Nektar::LibUtilities::ePoint, Nektar::LibUtilities::ePrism, Nektar::LibUtilities::ePyramid, Nektar::LibUtilities::eQuadrilateral, Nektar::LibUtilities::eSegment, Nektar::LibUtilities::eTetrahedron, and Nektar::LibUtilities::eTriangle.

Referenced by Nektar::Utilities::OutputGmsh::OutputGmsh().

965 {
966  using namespace LibUtilities;
967  std::map<unsigned int, ElmtConfig> tmp;
968 
969  // Elmt type, order, face, volume
970  tmp[ 1] = ElmtConfig(eSegment, 1, true, true);
971  tmp[ 2] = ElmtConfig(eTriangle, 1, true, true);
972  tmp[ 3] = ElmtConfig(eQuadrilateral, 1, true, true);
973  tmp[ 4] = ElmtConfig(eTetrahedron, 1, true, true);
974  tmp[ 5] = ElmtConfig(eHexahedron, 1, true, true);
975  tmp[ 6] = ElmtConfig(ePrism, 1, true, true);
976  tmp[ 7] = ElmtConfig(ePyramid, 1, true, true);
977  tmp[ 8] = ElmtConfig(eSegment, 2, true, true);
978  tmp[ 9] = ElmtConfig(eTriangle, 2, true, true);
979  tmp[ 10] = ElmtConfig(eQuadrilateral, 2, true, true);
980  tmp[ 11] = ElmtConfig(eTetrahedron, 2, true, true);
981  tmp[ 12] = ElmtConfig(eHexahedron, 2, true, true);
982  tmp[ 13] = ElmtConfig(ePrism, 2, true, true);
983  tmp[ 14] = ElmtConfig(ePyramid, 2, true, true);
984  tmp[ 15] = ElmtConfig(ePoint, 1, true, false);
985  tmp[ 16] = ElmtConfig(eQuadrilateral, 2, false, false);
986  tmp[ 17] = ElmtConfig(eHexahedron, 2, false, false);
987  tmp[ 18] = ElmtConfig(ePrism, 2, false, false);
988  tmp[ 19] = ElmtConfig(ePyramid, 2, false, false);
989  tmp[ 20] = ElmtConfig(eTriangle, 3, false, false);
990  tmp[ 21] = ElmtConfig(eTriangle, 3, true, false);
991  tmp[ 22] = ElmtConfig(eTriangle, 4, false, false);
992  tmp[ 23] = ElmtConfig(eTriangle, 4, true, false);
993  tmp[ 24] = ElmtConfig(eTriangle, 5, false, false);
994  tmp[ 25] = ElmtConfig(eTriangle, 5, true, false);
995  tmp[ 26] = ElmtConfig(eSegment, 3, true, false);
996  tmp[ 27] = ElmtConfig(eSegment, 4, true, false);
997  tmp[ 28] = ElmtConfig(eSegment, 5, true, false);
998  tmp[ 29] = ElmtConfig(eTetrahedron, 3, true, true);
999  tmp[ 30] = ElmtConfig(eTetrahedron, 4, true, true);
1000  tmp[ 31] = ElmtConfig(eTetrahedron, 5, true, true);
1001  tmp[ 32] = ElmtConfig(eTetrahedron, 4, true, false);
1002  tmp[ 33] = ElmtConfig(eTetrahedron, 5, true, false);
1003  tmp[ 36] = ElmtConfig(eQuadrilateral, 3, true, false);
1004  tmp[ 37] = ElmtConfig(eQuadrilateral, 4, true, false);
1005  tmp[ 38] = ElmtConfig(eQuadrilateral, 5, true, false);
1006  tmp[ 39] = ElmtConfig(eQuadrilateral, 3, false, false);
1007  tmp[ 40] = ElmtConfig(eQuadrilateral, 4, false, false);
1008  tmp[ 41] = ElmtConfig(eQuadrilateral, 5, false, false);
1009  tmp[ 42] = ElmtConfig(eTriangle, 6, true, false);
1010  tmp[ 43] = ElmtConfig(eTriangle, 7, true, false);
1011  tmp[ 44] = ElmtConfig(eTriangle, 8, true, false);
1012  tmp[ 45] = ElmtConfig(eTriangle, 9, true, false);
1013  tmp[ 46] = ElmtConfig(eTriangle, 10, true, false);
1014  tmp[ 47] = ElmtConfig(eQuadrilateral, 6, true, false);
1015  tmp[ 48] = ElmtConfig(eQuadrilateral, 7, true, false);
1016  tmp[ 49] = ElmtConfig(eQuadrilateral, 8, true, false);
1017  tmp[ 50] = ElmtConfig(eQuadrilateral, 9, true, false);
1018  tmp[ 51] = ElmtConfig(eQuadrilateral, 10, true, false);
1019  tmp[ 52] = ElmtConfig(eTriangle, 6, false, false);
1020  tmp[ 53] = ElmtConfig(eTriangle, 7, false, false);
1021  tmp[ 54] = ElmtConfig(eTriangle, 8, false, false);
1022  tmp[ 55] = ElmtConfig(eTriangle, 9, false, false);
1023  tmp[ 56] = ElmtConfig(eTriangle, 10, false, false);
1024  tmp[ 57] = ElmtConfig(eQuadrilateral, 6, false, false);
1025  tmp[ 58] = ElmtConfig(eQuadrilateral, 7, false, false);
1026  tmp[ 59] = ElmtConfig(eQuadrilateral, 8, false, false);
1027  tmp[ 60] = ElmtConfig(eQuadrilateral, 9, false, false);
1028  tmp[ 61] = ElmtConfig(eQuadrilateral, 10, false, false);
1029  tmp[ 62] = ElmtConfig(eSegment, 6, true, false);
1030  tmp[ 63] = ElmtConfig(eSegment, 7, true, false);
1031  tmp[ 64] = ElmtConfig(eSegment, 8, true, false);
1032  tmp[ 65] = ElmtConfig(eSegment, 9, true, false);
1033  tmp[ 66] = ElmtConfig(eSegment, 10, true, false);
1034  tmp[ 71] = ElmtConfig(eTetrahedron, 6, true, true);
1035  tmp[ 72] = ElmtConfig(eTetrahedron, 7, true, true);
1036  tmp[ 73] = ElmtConfig(eTetrahedron, 8, true, true);
1037  tmp[ 74] = ElmtConfig(eTetrahedron, 9, true, true);
1038  tmp[ 75] = ElmtConfig(eTetrahedron, 10, true, true);
1039  tmp[ 79] = ElmtConfig(eTetrahedron, 6, true, false);
1040  tmp[ 80] = ElmtConfig(eTetrahedron, 7, true, false);
1041  tmp[ 81] = ElmtConfig(eTetrahedron, 8, true, false);
1042  tmp[ 82] = ElmtConfig(eTetrahedron, 9, true, false);
1043  tmp[ 83] = ElmtConfig(eTetrahedron, 10, true, false);
1044  tmp[ 90] = ElmtConfig(ePrism, 3, true, true);
1045  tmp[ 91] = ElmtConfig(ePrism, 4, true, true);
1046  tmp[ 92] = ElmtConfig(eHexahedron, 3, true, true);
1047  tmp[ 93] = ElmtConfig(eHexahedron, 4, true, true);
1048  tmp[ 94] = ElmtConfig(eHexahedron, 5, true, true);
1049  tmp[ 95] = ElmtConfig(eHexahedron, 6, true, true);
1050  tmp[ 96] = ElmtConfig(eHexahedron, 7, true, true);
1051  tmp[ 97] = ElmtConfig(eHexahedron, 8, true, true);
1052  tmp[ 98] = ElmtConfig(eHexahedron, 9, true, true);
1053  tmp[ 99] = ElmtConfig(eHexahedron, 3, true, false);
1054  tmp[100] = ElmtConfig(eHexahedron, 4, true, false);
1055  tmp[101] = ElmtConfig(eHexahedron, 5, true, false);
1056  tmp[102] = ElmtConfig(eHexahedron, 6, true, false);
1057  tmp[103] = ElmtConfig(eHexahedron, 7, true, false);
1058  tmp[104] = ElmtConfig(eHexahedron, 8, true, false);
1059  tmp[105] = ElmtConfig(eHexahedron, 9, true, false);
1060  tmp[106] = ElmtConfig(ePrism, 5, true, true);
1061  tmp[107] = ElmtConfig(ePrism, 6, true, true);
1062  tmp[108] = ElmtConfig(ePrism, 7, true, true);
1063  tmp[109] = ElmtConfig(ePrism, 8, true, true);
1064  tmp[110] = ElmtConfig(ePrism, 9, true, true);
1065  tmp[111] = ElmtConfig(ePrism, 3, true, false);
1066  tmp[112] = ElmtConfig(ePrism, 4, true, false);
1067  tmp[113] = ElmtConfig(ePrism, 5, true, false);
1068  tmp[114] = ElmtConfig(ePrism, 6, true, false);
1069  tmp[115] = ElmtConfig(ePrism, 7, true, false);
1070  tmp[116] = ElmtConfig(ePrism, 8, true, false);
1071  tmp[117] = ElmtConfig(ePrism, 9, true, false);
1072  tmp[118] = ElmtConfig(ePyramid, 3, true, true);
1073  tmp[119] = ElmtConfig(ePyramid, 4, true, true);
1074  tmp[120] = ElmtConfig(ePyramid, 5, true, true);
1075  tmp[121] = ElmtConfig(ePyramid, 6, true, true);
1076  tmp[122] = ElmtConfig(ePyramid, 7, true, true);
1077  tmp[123] = ElmtConfig(ePyramid, 8, true, true);
1078  tmp[124] = ElmtConfig(ePyramid, 9, true, true);
1079  tmp[125] = ElmtConfig(ePyramid, 3, true, false);
1080  tmp[126] = ElmtConfig(ePyramid, 4, true, false);
1081  tmp[127] = ElmtConfig(ePyramid, 5, true, false);
1082  tmp[128] = ElmtConfig(ePyramid, 6, true, false);
1083  tmp[129] = ElmtConfig(ePyramid, 7, true, false);
1084  tmp[130] = ElmtConfig(ePyramid, 7, true, false);
1085  tmp[131] = ElmtConfig(ePyramid, 8, true, false);
1086 
1087  return tmp;
1088 }
Nektar::NekMeshUtils::ElmtConfig
Basic information about an element.
Definition: Element.h:58
int Nektar::Utilities::InputGmsh::GetNnodes ( unsigned int  InputGmshEntity)
private

For a given msh ID, return the corresponding number of nodes.

Definition at line 425 of file InputGmsh.cpp.

References Nektar::LibUtilities::eHexahedron, elmMap, Nektar::LibUtilities::eNodalTriEvenlySpaced, Nektar::LibUtilities::ePoint, Nektar::LibUtilities::ePrism, Nektar::LibUtilities::ePyramid, Nektar::LibUtilities::eQuadrilateral, Nektar::LibUtilities::eSegment, Nektar::LibUtilities::eTetrahedron, Nektar::LibUtilities::eTriangle, Nektar::NekMeshUtils::Point::GetNumNodes(), Nektar::NekMeshUtils::Line::GetNumNodes(), Nektar::NekMeshUtils::Pyramid::GetNumNodes(), Nektar::NekMeshUtils::Hexahedron::GetNumNodes(), Nektar::NekMeshUtils::Quadrilateral::GetNumNodes(), Nektar::NekMeshUtils::Tetrahedron::GetNumNodes(), Nektar::NekMeshUtils::Prism::GetNumNodes(), Nektar::NekMeshUtils::Triangle::GetNumNodes(), and Nektar::iterator.

Referenced by Process().

426 {
427  int nNodes;
428  map<unsigned int, ElmtConfig>::iterator it;
429 
430  it = elmMap.find(InputGmshEntity);
431 
432  if (it == elmMap.end())
433  {
434  cerr << "Unknown element type " << InputGmshEntity << endl;
435  abort();
436  }
437 
438  switch (it->second.m_e)
439  {
440  case LibUtilities::ePoint:
441  nNodes = Point::GetNumNodes(it->second);
442  break;
443  case LibUtilities::eSegment:
444  nNodes = Line::GetNumNodes(it->second);
445  break;
446  case LibUtilities::eTriangle:
447  nNodes = Triangle::GetNumNodes(it->second);
448  break;
449  case LibUtilities::eQuadrilateral:
450  nNodes = Quadrilateral::GetNumNodes(it->second);
451  break;
452  case LibUtilities::eTetrahedron:
453  nNodes = Tetrahedron::GetNumNodes(it->second);
454  it->second.m_faceCurveType = LibUtilities::eNodalTriEvenlySpaced;
455  break;
456  case LibUtilities::ePyramid:
457  nNodes = Pyramid::GetNumNodes(it->second);
458  break;
459  case LibUtilities::ePrism:
460  nNodes = Prism::GetNumNodes(it->second);
461  break;
462  case LibUtilities::eHexahedron:
463  nNodes = Hexahedron::GetNumNodes(it->second);
464  break;
465  default:
466  cerr << "Unknown element type!" << endl;
467  abort();
468  break;
469  }
470 
471  return nNodes;
472 }
Nektar::NekMeshUtils::Quadrilateral::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a quadrilateral.
Definition: Quadrilateral.cpp:203
Nektar::NekMeshUtils::Line::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a line.
Definition: Line.cpp:115
Nektar::NekMeshUtils::Prism::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a prism.
Definition: Prism.cpp:218
Nektar::NekMeshUtils::Triangle::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a triangle.
Definition: Triangle.cpp:144
Nektar::NekMeshUtils::Hexahedron::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a hexahedron.
Definition: Hexahedron.cpp:182
Nektar::iterator
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
Definition: MatrixOperations.cpp:96
Nektar::NekMeshUtils::Tetrahedron::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a tetrahedron.
Definition: Tetrahedron.cpp:236
Nektar::NekMeshUtils::Pyramid::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a pyramid.
Definition: Pyramid.cpp:175
Nektar::NekMeshUtils::Point::GetNumNodes
static NEKMESHUTILS_EXPORT unsigned int GetNumNodes(ElmtConfig pConf)
Return the number of nodes defining a point (i.e. return 1).
Definition: Point.cpp:66
Nektar::LibUtilities::eNodalTriEvenlySpaced
2D Evenly-spaced points on a Triangle
Definition: PointsType.h:70
Nektar::Utilities::InputGmsh::elmMap
static std::map< unsigned int, ElmtConfig > elmMap
Definition: InputGmsh.h:68
vector< int > Nektar::Utilities::InputGmsh::HexReordering ( ElmtConfig  conf)
private

Create a reordering for hexahedra.

Definition at line 817 of file InputGmsh.cpp.

References Nektar::StdRegions::eDir1BwdDir1_Dir2FwdDir2, Nektar::StdRegions::eDir1FwdDir1_Dir2FwdDir2, Nektar::StdRegions::eDir1FwdDir2_Dir2FwdDir1, Nektar::NekMeshUtils::ElmtConfig::m_faceNodes, Nektar::NekMeshUtils::ElmtConfig::m_order, Nektar::NekMeshUtils::ElmtConfig::m_volumeNodes, and Nektar::Utilities::quadTensorNodeOrdering().

Referenced by CreateReordering().

818 {
819  const int order = conf.m_order;
820  const int n = order - 1;
821  const int n2 = n * n;
822  int i, j, k;
823 
824  vector<int> mapping;
825 
826  // Map taking Gmsh edges to Nektar++ edges.
827  static int gmshToNekEdge[12] = {0, -3, 4, 1, 5, 2, 6, 7, 8, -11, 9, 10};
828 
829  // Push back vertices.
830  mapping.resize(8);
831  for (i = 0; i < 8; ++i)
832  {
833  mapping[i] = i;
834  }
835 
836  if (order == 1)
837  {
838  return mapping;
839  }
840 
841  // Curvilinear edges
842  mapping.resize(8 + 12 * n);
843 
844  // Reorder edges.
845  int cnt = 8, offset;
846  for (i = 0; i < 12; ++i)
847  {
848  int edge = gmshToNekEdge[i];
849  offset = 8 + n * abs(edge);
850 
851  if (edge < 0)
852  {
853  for (int j = 0; j < n; ++j)
854  {
855  mapping[offset + n - j - 1] = cnt++;
856  }
857  }
858  else
859  {
860  for (int j = 0; j < n; ++j)
861  {
862  mapping[offset + j] = cnt++;
863  }
864  }
865  }
866 
867  if (conf.m_faceNodes == false || n2 == 0)
868  {
869  return mapping;
870  }
871 
872  // Curvilinear face nodes.
873  mapping.resize(8 + 12 * n + 6 * n2);
874 
875  // Map which takes Gmsh -> Nektar++ faces in the local element.
876  static int gmsh2NekFace[6] = {0, 1, 4, 2, 3, 5};
877 
878  // Map which defines orientation between Gmsh and Nektar++ faces.
879  StdRegions::Orientation faceOrient[6] = {
880  StdRegions::eDir1FwdDir2_Dir2FwdDir1,
881  StdRegions::eDir1FwdDir1_Dir2FwdDir2,
882  StdRegions::eDir1FwdDir2_Dir2FwdDir1,
883  StdRegions::eDir1FwdDir1_Dir2FwdDir2,
884  StdRegions::eDir1BwdDir1_Dir2FwdDir2,
885  StdRegions::eDir1FwdDir1_Dir2FwdDir2};
886 
887  for (i = 0; i < 6; ++i)
888  {
889  int face = gmsh2NekFace[i];
890  int offset2 = 8 + 12 * n + i * n2;
891  offset = 8 + 12 * n + face * n2;
892 
893  // Create a list of interior face nodes for this face only.
894  vector<int> faceNodes(n2);
895  for (j = 0; j < n2; ++j)
896  {
897  faceNodes[j] = offset2 + j;
898  }
899 
900  // Now get the reordering of this face, which puts Gmsh
901  // recursive ordering into Nektar++ row-by-row order.
902  vector<int> tmp = quadTensorNodeOrdering(faceNodes, n);
903 
904  // Finally reorient the face according to the geometry
905  // differences.
906  if (faceOrient[i] == StdRegions::eDir1FwdDir1_Dir2FwdDir2)
907  {
908  // Orientation is the same, just copy.
909  for (j = 0; j < n2; ++j)
910  {
911  mapping[offset + j] = tmp[j];
912  }
913  }
914  else if (faceOrient[i] == StdRegions::eDir1FwdDir2_Dir2FwdDir1)
915  {
916  // Tranposed faces
917  for (j = 0; j < n; ++j)
918  {
919  for (k = 0; k < n; ++k)
920  {
921  mapping[offset + j * n + k] = tmp[k * n + j];
922  }
923  }
924  }
925  else if (faceOrient[i] == StdRegions::eDir1BwdDir1_Dir2FwdDir2)
926  {
927  for (j = 0; j < n; ++j)
928  {
929  for (k = 0; k < n; ++k)
930  {
931  mapping[offset + j * n + k] = tmp[j * n + (n - k - 1)];
932  }
933  }
934  }
935  }
936 
937  if (conf.m_volumeNodes == false)
938  {
939  return mapping;
940  }
941 
942  const int totPoints = (order + 1) * (order + 1) * (order + 1);
943  mapping.resize(totPoints);
944 
945  // TODO: Fix ordering of volume nodes.
946  for (i = 8 + 12 * n + 6 * n2; i < totPoints; ++i)
947  {
948  mapping[i] = i;
949  }
950 
951  return mapping;
952 }
Nektar::NekMeshUtils::ElmtConfig::m_faceNodes
bool m_faceNodes
Denotes whether the element contains face nodes. For 2D elements, if this is true then the element co...
Definition: Element.h:89
Nektar::Utilities::quadTensorNodeOrdering
std::vector< int > quadTensorNodeOrdering(const std::vector< int > &nodes, int n)
Reorder a quadrilateral to appear in Nektar++ ordering from Gmsh.
Definition: InputGmsh.cpp:68
Nektar::NekMeshUtils::ElmtConfig::m_order
unsigned int m_order
Order of the element.
Definition: Element.h:96
Nektar::NekMeshUtils::ElmtConfig::m_volumeNodes
bool m_volumeNodes
Denotes whether the element contains volume (i.e. interior) nodes. These are not supported by either ...
Definition: Element.h:94
vector< int > Nektar::Utilities::InputGmsh::PrismReordering ( ElmtConfig  conf)
private

Create a reordering for prisms.

Note that whilst Gmsh MSH files have the capability to support high-order prisms, presently Gmsh does not seem to be capable of generating higher than second-order prismatic meshes, so most of the following is untested.

Definition at line 742 of file InputGmsh.cpp.

References Nektar::NekMeshUtils::ElmtConfig::m_faceNodes, and Nektar::NekMeshUtils::ElmtConfig::m_order.

Referenced by CreateReordering().

743 {
744  const int order = conf.m_order;
745  const int n = order - 1;
746 
747  int i;
748  vector<int> mapping(6);
749 
750  // To get from Gmsh -> Nektar++ prism, coordinates axes are
751  // different; need to mirror in the triangular faces, and then
752  // reorder vertices to make ordering anticlockwise on base quad.
753  static int gmshToNekVerts[6] = {3, 4, 1, 0, 5, 2};
754 
755  for (i = 0; i < 6; ++i)
756  {
757  mapping[i] = gmshToNekVerts[i];
758  }
759 
760  if (order == 1)
761  {
762  return mapping;
763  }
764 
765  // Curvilinear edges.
766  mapping.resize(6 + 9 * n);
767 
768  static int gmshToNekEdge[9] = {2, 7, 3, 6, 1, 8, 0, 4, 5};
769  static int gmshToNekRev[9] = {1, 0, 1, 0, 1, 1, 0, 0, 0};
770 
771  // Reorder edges.
772  int offset, cnt = 6;
773  for (i = 0; i < 9; ++i)
774  {
775  offset = 6 + n * gmshToNekEdge[i];
776 
777  if (gmshToNekRev[i])
778  {
779  for (int j = 0; j < n; ++j)
780  {
781  mapping[offset + n - j - 1] = cnt++;
782  }
783  }
784  else
785  {
786  for (int j = 0; j < n; ++j)
787  {
788  mapping[offset + j] = cnt++;
789  }
790  }
791  }
792 
793  if (conf.m_faceNodes == false)
794  {
795  return mapping;
796  }
797 
798  if (order > 2)
799  {
800  cerr << "Gmsh prisms of order > 2 with face curvature "
801  << "not supported in NekMesh (or indeed Gmsh at"
802  << "time of writing)." << endl;
803  abort();
804  }
805 
806  mapping.resize(18);
807  mapping[15] = 15;
808  mapping[16] = 17;
809  mapping[17] = 16;
810 
811  return mapping;
812 }
Nektar::NekMeshUtils::ElmtConfig::m_faceNodes
bool m_faceNodes
Denotes whether the element contains face nodes. For 2D elements, if this is true then the element co...
Definition: Element.h:89
Nektar::NekMeshUtils::ElmtConfig::m_order
unsigned int m_order
Order of the element.
Definition: Element.h:96
void Nektar::Utilities::InputGmsh::Process ( )
virtual

Gmsh file contains a list of nodes and their coordinates, along with a list of elements and those nodes which define them. We read in and store the list of nodes in #m_node and store the list of elements in #m_element. Each new element is supplied with a list of entries from #m_node which defines the element. Finally some mesh statistics are printed.

Parameters
pFilenameFilename of Gmsh file to read.

Implements Nektar::Utilities::Module.

Definition at line 189 of file InputGmsh.cpp.

References Nektar::LibUtilities::NekFactory< tKey, tBase, >::CreateInstance(), CreateReordering(), elmMap, Nektar::NekMeshUtils::GetElementFactory(), GetNnodes(), Nektar::iterator, Nektar::Utilities::Module::m_mesh, Nektar::Utilities::InputModule::m_mshFile, Nektar::Utilities::InputModule::OpenStream(), Nektar::Utilities::Module::ProcessComposites(), Nektar::Utilities::Module::ProcessEdges(), Nektar::Utilities::Module::ProcessElements(), Nektar::Utilities::Module::ProcessFaces(), Nektar::Utilities::Module::ProcessVertices(), and Nektar::LibUtilities::ShapeTypeMap.

190 {
191  // Open the file stream.
192  OpenStream();
193 
194  m_mesh->m_expDim = 0;
195  m_mesh->m_spaceDim = 0;
196  string line;
197  int nVertices = 0;
198  int nEntities = 0;
199  int elm_type = 0;
200  int prevId = -1;
201  int maxTagId = -1;
202 
203  map<unsigned int, ElmtConfig>::iterator it;
204 
205  // This map takes each element ID and maps it to a permutation map
206  // that is required to take Gmsh element node orderings and map them
207  // to Nektar++ orderings.
208  boost::unordered_map<int, vector<int> > orderingMap;
209  boost::unordered_map<int, vector<int> >::iterator oIt;
210 
211  if (m_mesh->m_verbose)
212  {
213  cout << "InputGmsh: Start reading file..." << endl;
214  }
215 
216  while (!m_mshFile.eof())
217  {
218  getline(m_mshFile, line);
219  stringstream s(line);
220  string word;
221  s >> word;
222 
223  // Process nodes.
224  if (word == "$Nodes")
225  {
226  getline(m_mshFile, line);
227  stringstream s(line);
228  s >> nVertices;
229  int id = 0;
230  for (int i = 0; i < nVertices; ++i)
231  {
232  getline(m_mshFile, line);
233  stringstream st(line);
234  double x = 0, y = 0, z = 0;
235  st >> id >> x >> y >> z;
236 
237  if ((x * x) > 0.000001 && m_mesh->m_spaceDim < 1)
238  {
239  m_mesh->m_spaceDim = 1;
240  }
241  if ((y * y) > 0.000001 && m_mesh->m_spaceDim < 2)
242  {
243  m_mesh->m_spaceDim = 2;
244  }
245  if ((z * z) > 0.000001 && m_mesh->m_spaceDim < 3)
246  {
247  m_mesh->m_spaceDim = 3;
248  }
249 
250  id -= 1; // counter starts at 0
251 
252  if (id - prevId != 1)
253  {
254  cerr << "Gmsh vertex ids should be contiguous" << endl;
255  abort();
256  }
257  prevId = id;
258  m_mesh->m_node.push_back(
259  boost::shared_ptr<Node>(new Node(id, x, y, z)));
260  }
261  }
262  // Process elements
263  else if (word == "$Elements")
264  {
265  getline(m_mshFile, line);
266  stringstream s(line);
267  s >> nEntities;
268  for (int i = 0; i < nEntities; ++i)
269  {
270  getline(m_mshFile, line);
271  stringstream st(line);
272  int id = 0, num_tag = 0, num_nodes = 0;
273 
274  st >> id >> elm_type >> num_tag;
275  id -= 1; // counter starts at 0
276 
277  it = elmMap.find(elm_type);
278  if (it == elmMap.end())
279  {
280  cerr << "Error: element type " << elm_type
281  << " not supported" << endl;
282  abort();
283  }
284 
285  // Read element tags
286  vector<int> tags;
287  for (int j = 0; j < num_tag; ++j)
288  {
289  int tag = 0;
290  st >> tag;
291  tags.push_back(tag);
292  }
293  tags.resize(1);
294 
295  maxTagId = max(maxTagId, tags[0]);
296 
297  // Read element node list
298  vector<NodeSharedPtr> nodeList;
299  num_nodes = GetNnodes(elm_type);
300  for (int k = 0; k < num_nodes; ++k)
301  {
302  int node = 0;
303  st >> node;
304  node -= 1; // counter starts at 0
305  nodeList.push_back(m_mesh->m_node[node]);
306  }
307 
308  // Look up reordering.
309  oIt = orderingMap.find(elm_type);
310 
311  // If it's not created, then create it.
312  if (oIt == orderingMap.end())
313  {
314  oIt = orderingMap.insert(
315  make_pair(elm_type, CreateReordering(elm_type))).first;
316  }
317 
318  // Apply reordering map where necessary.
319  if (oIt->second.size() > 0)
320  {
321  vector<int> &mapping = oIt->second;
322  vector<NodeSharedPtr> tmp = nodeList;
323  for (int i = 0; i < mapping.size(); ++i)
324  {
325  nodeList[i] = tmp[mapping[i]];
326  }
327  }
328 
329  // Create element
330  ElementSharedPtr E = GetElementFactory().CreateInstance(
331  it->second.m_e, it->second, nodeList, tags);
332 
333  // Determine mesh expansion dimension
334  if (E->GetDim() > m_mesh->m_expDim)
335  {
336  m_mesh->m_expDim = E->GetDim();
337  }
338  m_mesh->m_element[E->GetDim()].push_back(E);
339  }
340  }
341  }
342  m_mshFile.close();
343 
344  // Go through element and remap tags if necessary.
345  map<int, map<LibUtilities::ShapeType, int> > compMap;
346  map<int, map<LibUtilities::ShapeType, int> >::iterator cIt;
347  map<LibUtilities::ShapeType, int>::iterator sIt;
348 
349  for (int i = 0; i < m_mesh->m_element[m_mesh->m_expDim].size(); ++i)
350  {
351  ElementSharedPtr el = m_mesh->m_element[m_mesh->m_expDim][i];
352  LibUtilities::ShapeType type = el->GetConf().m_e;
353 
354  vector<int> tags = el->GetTagList();
355  int tag = tags[0];
356 
357  cIt = compMap.find(tag);
358 
359  if (cIt == compMap.end())
360  {
361  compMap[tag][type] = tag;
362  continue;
363  }
364 
365  // Reset tag for this element.
366  sIt = cIt->second.find(type);
367  if (sIt == cIt->second.end())
368  {
369  maxTagId++;
370  cIt->second[type] = maxTagId;
371  tags[0] = maxTagId;
372  el->SetTagList(tags);
373  }
374  else if (sIt->second != tag)
375  {
376  tags[0] = sIt->second;
377  el->SetTagList(tags);
378  }
379  }
380 
381  bool printInfo = false;
382  for (cIt = compMap.begin(); cIt != compMap.end(); ++cIt)
383  {
384  if (cIt->second.size() > 1)
385  {
386  printInfo = true;
387  break;
388  }
389  }
390 
391  if (printInfo)
392  {
393  cout << "Multiple elements in composite detected; remapped:" << endl;
394  for (cIt = compMap.begin(); cIt != compMap.end(); ++cIt)
395  {
396  if (cIt->second.size() > 1)
397  {
398  sIt = cIt->second.begin();
399  cout << "- Tag " << cIt->first << " => " << sIt->second << " ("
400  << LibUtilities::ShapeTypeMap[sIt->first] << ")";
401  sIt++;
402 
403  for (; sIt != cIt->second.end(); ++sIt)
404  {
405  cout << ", " << sIt->second << " ("
406  << LibUtilities::ShapeTypeMap[sIt->first] << ")";
407  }
408 
409  cout << endl;
410  }
411  }
412  }
413 
414  // Process rest of mesh.
415  ProcessVertices();
416  ProcessEdges();
417  ProcessFaces();
418  ProcessElements();
419  ProcessComposites();
420 }
Nektar::Utilities::InputModule::m_mshFile
std::ifstream m_mshFile
Input stream.
Definition: NekMesh/Module.h:214
Nektar::LibUtilities::NekFactory::CreateInstance
tBaseSharedPtr CreateInstance(tKey idKey BOOST_PP_COMMA_IF(MAX_PARAM) BOOST_PP_ENUM_BINARY_PARAMS(MAX_PARAM, tParam, x))
Create an instance of the class referred to by idKey.
Definition: NekFactory.hpp:162
Nektar::Utilities::Module::m_mesh
MeshSharedPtr m_mesh
Mesh object.
Definition: NekMesh/Module.h:182
Nektar::NekMeshUtils::GetElementFactory
ElementFactory & GetElementFactory()
Definition: Element.cpp:47
Nektar::NekMeshUtils::Node
Represents a point in the domain.
Definition: Node.h:60
Nektar::LibUtilities::ShapeTypeMap
const char *const ShapeTypeMap[]
Definition: ShapeType.hpp:66
Nektar::Utilities::Module::ProcessEdges
virtual void ProcessEdges(bool ReprocessEdges=true)
Extract element edges.
Definition: NekMesh/Module.cpp:151
Nektar::Utilities::Module::ProcessVertices
virtual void ProcessVertices()
Extract element vertices.
Definition: NekMesh/Module.cpp:111
Nektar::Utilities::InputGmsh::CreateReordering
std::vector< int > CreateReordering(unsigned int InputGmshEntity)
Create a reordering map for a given element.
Definition: InputGmsh.cpp:482
Nektar::Utilities::Module::ProcessElements
virtual void ProcessElements()
Generate element IDs.
Definition: NekMesh/Module.cpp:331
Nektar::Utilities::Module::ProcessComposites
virtual void ProcessComposites()
Generate composites.
Definition: NekMesh/Module.cpp:349
Nektar::iterator
StandardMatrixTag boost::call_traits< LhsDataType >::const_reference rhs typedef NekMatrix< LhsDataType, StandardMatrixTag >::iterator iterator
Definition: MatrixOperations.cpp:96
Nektar::Utilities::InputGmsh::GetNnodes
int GetNnodes(unsigned int InputGmshEntity)
Definition: InputGmsh.cpp:425
Nektar::Utilities::Module::ProcessFaces
virtual void ProcessFaces(bool ReprocessFaces=true)
Extract element faces.
Definition: NekMesh/Module.cpp:264
Nektar::NekMeshUtils::ElementSharedPtr
boost::shared_ptr< Element > ElementSharedPtr
Definition: Edge.h:52
Nektar::Utilities::InputModule::OpenStream
void OpenStream()
Open a file for input.
Definition: NekMesh/Module.cpp:78
Nektar::Utilities::InputGmsh::elmMap
static std::map< unsigned int, ElmtConfig > elmMap
Definition: InputGmsh.h:68
vector< int > Nektar::Utilities::InputGmsh::QuadReordering ( ElmtConfig  conf)
private

Create a reordering for quadrilaterals.

Definition at line 574 of file InputGmsh.cpp.

References Nektar::NekMeshUtils::ElmtConfig::m_faceNodes, Nektar::NekMeshUtils::ElmtConfig::m_order, and Nektar::Utilities::quadTensorNodeOrdering().

Referenced by CreateReordering().

575 {
576  const int order = conf.m_order;
577  const int n = order - 1;
578 
579  // Copy vertices.
580  vector<int> mapping(4);
581  for (int i = 0; i < 4; ++i)
582  {
583  mapping[i] = i;
584  }
585 
586  if (order == 1)
587  {
588  return mapping;
589  }
590 
591  // Curvilinear edges.
592  mapping.resize(4 + 4 * n);
593 
594  for (int i = 4; i < 4 + 4 * n; ++i)
595  {
596  mapping[i] = i;
597  }
598 
599  if (!conf.m_faceNodes)
600  {
601  return mapping;
602  }
603 
604  // Interior nodes.
605  vector<int> interior(n * n);
606  for (int i = 0; i < interior.size(); ++i)
607  {
608  interior[i] = i + 4 + 4 * n;
609  }
610 
611  if (interior.size() > 0)
612  {
613  interior = quadTensorNodeOrdering(interior, n);
614  }
615  mapping.insert(mapping.end(), interior.begin(), interior.end());
616  return mapping;
617 }
Nektar::NekMeshUtils::ElmtConfig::m_faceNodes
bool m_faceNodes
Denotes whether the element contains face nodes. For 2D elements, if this is true then the element co...
Definition: Element.h:89
Nektar::Utilities::quadTensorNodeOrdering
std::vector< int > quadTensorNodeOrdering(const std::vector< int > &nodes, int n)
Reorder a quadrilateral to appear in Nektar++ ordering from Gmsh.
Definition: InputGmsh.cpp:68
Nektar::NekMeshUtils::ElmtConfig::m_order
unsigned int m_order
Order of the element.
Definition: Element.h:96
vector< int > Nektar::Utilities::InputGmsh::TetReordering ( ElmtConfig  conf)
private

Create a reordering for tetrahedra.

Definition at line 622 of file InputGmsh.cpp.

References Nektar::NekMeshUtils::HOTriangle< T >::Align(), Nektar::NekMeshUtils::ElmtConfig::m_faceNodes, Nektar::NekMeshUtils::ElmtConfig::m_order, Nektar::NekMeshUtils::HOTriangle< T >::surfVerts, and Nektar::Utilities::triTensorNodeOrdering().

Referenced by CreateReordering().

623 {
624  const int order = conf.m_order;
625  const int n = order - 1;
626  const int n2 = n * (n - 1) / 2;
627 
628  int i, j;
629  vector<int> mapping(4);
630 
631  // Copy vertices.
632  for (i = 0; i < 4; ++i)
633  {
634  mapping[i] = i;
635  }
636 
637  if (order == 1)
638  {
639  return mapping;
640  }
641 
642  // Curvilinear edges.
643  mapping.resize(4 + 6 * n);
644 
645  // Curvilinear edges.
646  static int gmshToNekEdge[6] = {0, 1, 2, 3, 5, 4};
647  static int gmshToNekRev[6] = {0, 0, 1, 1, 1, 1};
648 
649  // Reorder edges.
650  int offset, cnt = 4;
651  for (i = 0; i < 6; ++i)
652  {
653  offset = 4 + n * gmshToNekEdge[i];
654 
655  if (gmshToNekRev[i])
656  {
657  for (int j = 0; j < n; ++j)
658  {
659  mapping[offset + n - j - 1] = cnt++;
660  }
661  }
662  else
663  {
664  for (int j = 0; j < n; ++j)
665  {
666  mapping[offset + j] = cnt++;
667  }
668  }
669  }
670 
671  if (conf.m_faceNodes == false || n2 == 0)
672  {
673  return mapping;
674  }
675 
676  // Curvilinear faces.
677  mapping.resize(4 + 6 * n + 4 * n2);
678 
679  static int gmshToNekFace[4] = {0, 1, 3, 2};
680 
681  vector<int> triVertId(3);
682  triVertId[0] = 0;
683  triVertId[1] = 1;
684  triVertId[2] = 2;
685 
686  // Loop over Gmsh faces
687  for (i = 0; i < 4; ++i)
688  {
689  int face = gmshToNekFace[i];
690  int offset2 = 4 + 6 * n + i * n2;
691  offset = 4 + 6 * n + face * n2;
692 
693  // Create a list of interior face nodes for this face only.
694  vector<int> faceNodes(n2);
695  vector<int> toAlign(3);
696  for (j = 0; j < n2; ++j)
697  {
698  faceNodes[j] = offset2 + j;
699  }
700 
701  // Now get the reordering of this face, which puts Gmsh
702  // recursive ordering into Nektar++ row-by-row order.
703  vector<int> tmp = triTensorNodeOrdering(faceNodes, n - 1);
704  HOTriangle<int> hoTri(triVertId, tmp);
705 
706  // Apply reorientation
707  if (i == 0 || i == 2)
708  {
709  // Triangle verts {0,2,1} --> {0,1,2}
710  toAlign[0] = 0;
711  toAlign[1] = 2;
712  toAlign[2] = 1;
713  hoTri.Align(toAlign);
714  }
715  else if (i == 3)
716  {
717  // Triangle verts {1,2,0} --> {0,1,2}
718  toAlign[0] = 1;
719  toAlign[1] = 2;
720  toAlign[2] = 0;
721  hoTri.Align(toAlign);
722  }
723 
724  // Fill in mapping.
725  for (j = 0; j < n2; ++j)
726  {
727  mapping[offset + j] = hoTri.surfVerts[j];
728  }
729  }
730 
731  return mapping;
732 }
Nektar::NekMeshUtils::ElmtConfig::m_faceNodes
bool m_faceNodes
Denotes whether the element contains face nodes. For 2D elements, if this is true then the element co...
Definition: Element.h:89
Nektar::Utilities::triTensorNodeOrdering
std::vector< int > triTensorNodeOrdering(const std::vector< int > &nodes, int n)
Definition: InputGmsh.cpp:116
Nektar::NekMeshUtils::ElmtConfig::m_order
unsigned int m_order
Order of the element.
Definition: Element.h:96
Nektar::NekMeshUtils::HOTriangle
A lightweight struct for dealing with high-order triangle alignment.
Definition: Triangle.h:53
vector< int > Nektar::Utilities::InputGmsh::TriReordering ( ElmtConfig  conf)
private

Create a reordering for triangles.

Definition at line 525 of file InputGmsh.cpp.

References Nektar::NekMeshUtils::ElmtConfig::m_faceNodes, Nektar::NekMeshUtils::ElmtConfig::m_order, and Nektar::Utilities::triTensorNodeOrdering().

Referenced by CreateReordering().

526 {
527  const int order = conf.m_order;
528  const int n = order - 1;
529 
530  // Copy vertices.
531  vector<int> mapping(3);
532  for (int i = 0; i < 3; ++i)
533  {
534  mapping[i] = i;
535  }
536 
537  if (order == 1)
538  {
539  return mapping;
540  }
541 
542  // Curvilinear edges.
543  mapping.resize(3 + 3 * n);
544 
545  for (int i = 3; i < 3 + 3 * n; ++i)
546  {
547  mapping[i] = i;
548  }
549 
550  if (!conf.m_faceNodes)
551  {
552  return mapping;
553  }
554 
555  // Interior nodes.
556  vector<int> interior(n * (n - 1) / 2);
557  for (int i = 0; i < interior.size(); ++i)
558  {
559  interior[i] = i + 3 + 3 * n;
560  }
561 
562  if (interior.size() > 0)
563  {
564  interior = triTensorNodeOrdering(interior, n - 1);
565  }
566 
567  mapping.insert(mapping.end(), interior.begin(), interior.end());
568  return mapping;
569 }
Nektar::NekMeshUtils::ElmtConfig::m_faceNodes
bool m_faceNodes
Denotes whether the element contains face nodes. For 2D elements, if this is true then the element co...
Definition: Element.h:89
Nektar::Utilities::triTensorNodeOrdering
std::vector< int > triTensorNodeOrdering(const std::vector< int > &nodes, int n)
Definition: InputGmsh.cpp:116
Nektar::NekMeshUtils::ElmtConfig::m_order
unsigned int m_order
Order of the element.
Definition: Element.h:96

Member Data Documentation

ModuleKey Nektar::Utilities::InputGmsh::className
static
Initial value:
= GetModuleFactory().RegisterCreatorFunction(
ModuleKey(eInputModule, "msh"), InputGmsh::create, "Reads Gmsh msh file.")

ModuleKey for class.

Definition at line 62 of file InputGmsh.h.

std::map< unsigned int, ElmtConfig > Nektar::Utilities::InputGmsh::elmMap = InputGmsh::GenElmMap()
static

Element map; takes a msh id to an ElmtConfig object.

Definition at line 68 of file InputGmsh.h.

Referenced by CreateReordering(), GetNnodes(), and Process().

Generated on Sat Jun 4 2016 00:02:48 for Nektar++ by   doxygen 1.8.8