Nektar::Utilities::ProcessJac Class Reference

This processing module calculates the Jacobian of elements using SpatialDomains::GeomFactors and the Element::GetGeom method. For now it simply prints a list of elements which have negative Jacobian. More...

#include <ProcessJac.h>

Inheritance diagram for Nektar::Utilities::ProcessJac:

Collaboration diagram for Nektar::Utilities::ProcessJac:

Public Member Functions
	ProcessJac (MeshSharedPtr m)
virtual	~ProcessJac ()
virtual void	Process ()
	Write mesh to output file. More...
Public Member Functions inherited from Nektar::Utilities::ProcessModule
	ProcessModule ()
	ProcessModule (FieldSharedPtr p_f)
	ProcessModule (MeshSharedPtr p_m)
Public Member Functions inherited from Nektar::Utilities::Module
	Module (FieldSharedPtr p_f)
virtual void	Process (po::variables_map &vm)=0
virtual std::string	GetModuleName ()=0
void	RegisterConfig (string key, string value)
	Register a configuration option with a module. More...
void	PrintConfig ()
	Print out all configuration options for a module. More...
void	SetDefaults ()
	Sets default configuration options for those which have not been set. More...
bool	GetRequireEquiSpaced (void)
void	SetRequireEquiSpaced (bool pVal)
void	EvaluateTriFieldAtEquiSpacedPts (LocalRegions::ExpansionSharedPtr &exp, const Array< OneD, const NekDouble > &infield, Array< OneD, NekDouble > &outfield)
	Module (MeshSharedPtr p_m)
void	RegisterConfig (std::string key, std::string value)
void	PrintConfig ()
void	SetDefaults ()
MeshSharedPtr	GetMesh ()
virtual void	ProcessVertices ()
	Extract element vertices. More...
virtual void	ProcessEdges (bool ReprocessEdges=true)
	Extract element edges. More...
virtual void	ProcessFaces (bool ReprocessFaces=true)
	Extract element faces. More...
virtual void	ProcessElements ()
	Generate element IDs. More...
virtual void	ProcessComposites ()
	Generate composites. More...
virtual void	ClearElementLinks ()

Static Public Member Functions
static boost::shared_ptr< Module >	create (MeshSharedPtr m)
	Creates an instance of this class. More...

Static Public Attributes
static ModuleKey	className

Additional Inherited Members
Protected Member Functions inherited from Nektar::Utilities::Module
	Module ()
void	ReorderPrisms (PerMap &perFaces)
	Reorder node IDs so that prisms and tetrahedra are aligned correctly. More...
void	PrismLines (int prism, PerMap &perFaces, std::set< int > &prismsDone, std::vector< ElementSharedPtr > &line)
Protected Attributes inherited from Nektar::Utilities::Module
FieldSharedPtr	m_f
	Field object. More...
map< string, ConfigOption >	m_config
	List of configuration values. More...
bool	m_requireEquiSpaced
MeshSharedPtr	m_mesh
	Mesh object. More...
std::map< std::string, ConfigOption >	m_config
	List of configuration values. More...

Detailed Description

This processing module calculates the Jacobian of elements using SpatialDomains::GeomFactors and the Element::GetGeom method. For now it simply prints a list of elements which have negative Jacobian.

Definition at line 52 of file ProcessJac.h.

Constructor & Destructor Documentation

Nektar::Utilities::ProcessJac::ProcessJac

(

MeshSharedPtr

m

)

Definition at line 52 of file ProcessJac.cpp.

References Nektar::Utilities::Module::m_config.

                                      : ProcessModule(m)
{
    m_config["extract"] =
        ConfigOption(true, "0", "Extract non-valid elements from mesh.");
    m_config["list"] = ConfigOption(
        true, "0", "Print list of elements having negative Jacobian.");
}

Nektar::Utilities::ProcessJac::~ProcessJac ( )

virtual

Definition at line 60 of file ProcessJac.cpp.

{
}

Member Function Documentation

static boost::shared_ptr<Module> Nektar::Utilities::ProcessJac::create ( MeshSharedPtr  m )

inlinestatic

Creates an instance of this class.

Definition at line 56 of file ProcessJac.h.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

    {
        return MemoryManager<ProcessJac>::AllocateSharedPtr(m);
    }

void Nektar::Utilities::ProcessJac::Process ( )

virtual

Write mesh to output file.

Implements Nektar::Utilities::Module.

Definition at line 64 of file ProcessJac.cpp.

References Nektar::Utilities::Module::m_config, Nektar::Utilities::Module::m_mesh, Nektar::Utilities::Module::ProcessComposites(), Nektar::Utilities::Module::ProcessEdges(), Nektar::Utilities::Module::ProcessElements(), Nektar::Utilities::Module::ProcessFaces(), Nektar::Utilities::Module::ProcessVertices(), and Nektar::LibUtilities::ShapeTypeMap.

{
    if (m_mesh->m_verbose)
    {
        cout << "ProcessJac: Calculating Jacobians... " << endl;
    }

    bool extract   = m_config["extract"].as<bool>();
    bool printList = m_config["list"].as<bool>();

    vector<ElementSharedPtr> el = m_mesh->m_element[m_mesh->m_expDim];

    if (extract)
    {
        m_mesh->m_element[m_mesh->m_expDim].clear();
    }

    if (printList)
    {
        cout << "Elements with negative Jacobian:" << endl;
    }

    int nNeg = 0;

    Array<OneD, int> bin(20, 0);

    // Iterate over list of elements of expansion dimension.
    for (int i = 0; i < el.size(); ++i)
    {
        // Create elemental geometry.
        SpatialDomains::GeometrySharedPtr geom =
            el[i]->GetGeom(m_mesh->m_spaceDim);

        // Generate geometric factors.
        SpatialDomains::GeomFactorsSharedPtr gfac = geom->GetGeomFactors();

        // Get the Jacobian and, if it is negative, print a warning
        // message.
        if (!gfac->IsValid())
        {
            nNeg++;

            if (printList)
            {
                cout << "  - " << el[i]->GetId() << " ("
                     << LibUtilities::ShapeTypeMap[el[i]->GetConf().m_e] << ")"
                     << endl;
            }

            if (extract)
            {
                m_mesh->m_element[m_mesh->m_expDim].push_back(el[i]);
            }
        }
    }

    if (extract)
    {
        m_mesh->m_element[m_mesh->m_expDim - 1].clear();
        ProcessVertices();
        ProcessEdges();
        ProcessFaces();
        ProcessElements();
        ProcessComposites();
    }

    if (printList || m_mesh->m_verbose)
    {
        cout << "Total negative Jacobians: " << nNeg << endl;
    }
    else if (nNeg > 0)
    {
        cout << "WARNING: Detected " << nNeg << " element"
             << (nNeg == 1 ? "" : "s") << " with negative Jacobian." << endl;
    }
}

Member Data Documentation

ModuleKey Nektar::Utilities::ProcessJac::className

static

Initial value:

= GetModuleFactory().RegisterCreatorFunction(
    ModuleKey(eProcessModule, "jac"),
    ProcessJac::create,
    "Process elements based on values of Jacobian.")

Definition at line 60 of file ProcessJac.h.