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Nektar::SpatialDomains::PyrGeom Class Reference

#include <PyrGeom.h>

Inheritance diagram for Nektar::SpatialDomains::PyrGeom:
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Collaboration diagram for Nektar::SpatialDomains::PyrGeom:
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Public Member Functions

 PyrGeom ()
 
 PyrGeom (const Geometry2DSharedPtr faces[])
 
 ~PyrGeom ()
 
- Public Member Functions inherited from Nektar::LibUtilities::GraphVertexObject
 GraphVertexObject ()
 
 GraphVertexObject (const GraphVertexID id)
 
int getid ()
 
void setid (const GraphVertexID id)
 
virtual ~GraphVertexObject ()
 
- Public Member Functions inherited from Nektar::SpatialDomains::Geometry3D
 Geometry3D ()
 
 Geometry3D (const int coordim)
 
virtual ~Geometry3D ()
 
int GetEid (int i) const
 Return the ID of edge i in this element. More...
 
const Geometry1DSharedPtr GetEdge (int i) const
 
Geometry2DSharedPtr GetFace (int i)
 Return face i in this element. More...
 
int GetDir (const int faceidx, const int facedir) const
 Returns the element coordinate direction corresponding to a given face coordinate direction. More...
 
- Public Member Functions inherited from Nektar::SpatialDomains::Geometry
 Geometry ()
 
 Geometry (int coordim)
 
virtual ~Geometry ()
 
bool IsElmtConnected (int gvo_id, int locid) const
 
void AddElmtConnected (int gvo_id, int locid)
 
int NumElmtConnected () const
 
int GetCoordim () const
 
void SetCoordim (int coordim)
 
GeomFactorsSharedPtr GetGeomFactors ()
 
GeomFactorsSharedPtr GetRefGeomFactors (const Array< OneD, const LibUtilities::BasisSharedPtr > &tbasis)
 
GeomFactorsSharedPtr GetMetricInfo ()
 
LibUtilities::ShapeType GetShapeType (void)
 
int GetGlobalID (void)
 
void SetGlobalID (int globalid)
 
int GetVid (int i) const
 
int GetEid (int i) const
 
int GetFid (int i) const
 
int GetTid (int i) const
 
int GetNumVerts () const
 
PointGeomSharedPtr GetVertex (int i) const
 
StdRegions::Orientation GetEorient (const int i) const
 
StdRegions::Orientation GetPorient (const int i) const
 
StdRegions::Orientation GetForient (const int i) const
 
int GetNumEdges () const
 
int GetNumFaces () const
 
int GetShapeDim () const
 
StdRegions::StdExpansionSharedPtr GetXmap () const
 
const Array< OneD, const
NekDouble > & 
GetCoeffs (const int i) const
 
bool ContainsPoint (const Array< OneD, const NekDouble > &gloCoord, NekDouble tol=0.0)
 
bool ContainsPoint (const Array< OneD, const NekDouble > &gloCoord, Array< OneD, NekDouble > &locCoord, NekDouble tol)
 
bool ContainsPoint (const Array< OneD, const NekDouble > &gloCoord, Array< OneD, NekDouble > &locCoord, NekDouble tol, NekDouble &resid)
 
int GetVertexEdgeMap (int i, int j) const
 
int GetVertexFaceMap (int i, int j) const
 return the id of the $j^{th}$ face attached to the $ i^{th}$ vertex More...
 
int GetEdgeFaceMap (int i, int j) const
 
void FillGeom ()
 Put all quadrature information into face/edge structure and backward transform. More...
 
NekDouble GetLocCoords (const Array< OneD, const NekDouble > &coords, Array< OneD, NekDouble > &Lcoords)
 
NekDouble GetCoord (const int i, const Array< OneD, const NekDouble > &Lcoord)
 Given local collapsed coordinate Lcoord return the value of physical coordinate in direction i. More...
 
void SetOwnData ()
 
const LibUtilities::BasisSharedPtr GetBasis (const int i)
 Return the j-th basis of the i-th co-ordinate dimension. More...
 
const LibUtilities::PointsKeyVector GetPointsKeys ()
 
void Reset (CurveMap &curvedEdges, CurveMap &curvedFaces)
 

Static Public Attributes

static const int kNverts = 5
 
static const int kNedges = 8
 
static const int kNqfaces = 1
 
static const int kNtfaces = 4
 
static const int kNfaces = kNqfaces + kNtfaces
 
static const std::string XMLElementType
 

Protected Member Functions

virtual void v_GenGeomFactors ()
 
virtual NekDouble v_GetLocCoords (const Array< OneD, const NekDouble > &coords, Array< OneD, NekDouble > &Lcoords)
 
virtual int v_GetNumVerts () const
 
virtual int v_GetNumEdges () const
 
virtual int v_GetNumFaces () const
 
virtual int v_GetDir (const int faceidx, const int facedir) const
 
virtual void v_Reset (CurveMap &curvedEdges, CurveMap &curvedFaces)
 Reset this geometry object: unset the current state and remove allocated GeomFactors. More...
 
- Protected Member Functions inherited from Nektar::SpatialDomains::Geometry3D
void NewtonIterationForLocCoord (const Array< OneD, const NekDouble > &coords, const Array< OneD, const NekDouble > &ptsx, const Array< OneD, const NekDouble > &ptsy, const Array< OneD, const NekDouble > &ptsz, Array< OneD, NekDouble > &Lcoords, NekDouble &resid)
 
virtual void v_FillGeom ()
 Put all quadrature information into face/edge structure and backward transform. More...
 
virtual NekDouble v_GetCoord (const int i, const Array< OneD, const NekDouble > &Lcoord)
 Given local collapsed coordinate Lcoord return the value of physical coordinate in direction i. More...
 
virtual int v_GetShapeDim () const
 Return the dimension of this element. More...
 
virtual int v_GetVid (int i) const
 Return the vertex ID of vertex i. More...
 
virtual PointGeomSharedPtr v_GetVertex (int i) const
 Return vertex i in this element. More...
 
virtual const SegGeomSharedPtr v_GetEdge (int i) const
 Return edge i of this element. More...
 
virtual StdRegions::Orientation v_GetEorient (const int i) const
 Return the orientation of edge i in this element. More...
 
virtual int v_GetEid (int i) const
 Return the ID of edge i in this element. More...
 
virtual const Geometry2DSharedPtr v_GetFace (int i) const
 Return face i in this element. More...
 
virtual StdRegions::Orientation v_GetForient (const int i) const
 Return the orientation of face i in this element. More...
 
virtual int v_GetFid (int i) const
 Return the ID of face i in this element. More...
 
virtual int v_GetEid () const
 Return the ID of this element. More...
 
virtual int v_WhichEdge (SegGeomSharedPtr edge)
 Return the local ID of a given edge. More...
 
virtual int v_WhichFace (Geometry2DSharedPtr face)
 Return the local ID of a given face. More...
 
virtual const
LibUtilities::BasisSharedPtr 
v_GetBasis (const int i)
 Return the j-th basis of the i-th co-ordinate dimension. More...
 
virtual void v_AddElmtConnected (int gvo_id, int locid)
 
virtual bool v_IsElmtConnected (int gvo_id, int locid) const
 
virtual int v_NumElmtConnected () const
 
virtual void v_SetOwnData ()
 
- Protected Member Functions inherited from Nektar::SpatialDomains::Geometry
void GenGeomFactors ()
 
virtual StdRegions::Orientation v_GetPorient (const int i) const
 
virtual
StdRegions::StdExpansionSharedPtr 
v_GetXmap () const
 
virtual int v_GetCoordim () const
 
virtual bool v_ContainsPoint (const Array< OneD, const NekDouble > &gloCoord, NekDouble tol=0.0)
 
virtual bool v_ContainsPoint (const Array< OneD, const NekDouble > &gloCoord, Array< OneD, NekDouble > &locCoord, NekDouble tol)
 
virtual bool v_ContainsPoint (const Array< OneD, const NekDouble > &gloCoord, Array< OneD, NekDouble > &locCoord, NekDouble tol, NekDouble &resid)
 
virtual int v_GetVertexEdgeMap (int i, int j) const
 
virtual int v_GetVertexFaceMap (int i, int j) const
 
virtual int v_GetEdgeFaceMap (int i, int j) const
 
void SetUpCoeffs (const int nCoeffs)
 Initialise the m_coeffs array. More...
 

Private Member Functions

void SetUpLocalEdges ()
 
void SetUpLocalVertices ()
 
void SetUpEdgeOrientation ()
 
void SetUpFaceOrientation ()
 
void SetUpXmap ()
 Set up the m_xmap object by determining the order of each direction from derived faces. More...
 

Additional Inherited Members

- Static Protected Member Functions inherited from Nektar::SpatialDomains::Geometry
static GeomFactorsSharedPtr ValidateRegGeomFactor (GeomFactorsSharedPtr geomFactor)
 
- Protected Attributes inherited from Nektar::LibUtilities::GraphVertexObject
GraphVertexID m_id
 
- Protected Attributes inherited from Nektar::SpatialDomains::Geometry3D
PointGeomVector m_verts
 
SegGeomVector m_edges
 
Geometry2DVector m_faces
 
std::vector
< StdRegions::Orientation
m_eorient
 
std::vector
< StdRegions::Orientation
m_forient
 
std::list< CompToElmtm_elmtmap
 
bool m_owndata
 
int m_eid
 
bool m_ownverts
 
- Protected Attributes inherited from Nektar::SpatialDomains::Geometry
int m_coordim
 coordinate dimension More...
 
GeomFactorsSharedPtr m_geomFactors
 
GeomState m_geomFactorsState
 
StdRegions::StdExpansionSharedPtr m_xmap
 
GeomState m_state
 enum identifier to determine if quad points are filled More...
 
GeomType m_geomType
 
LibUtilities::ShapeType m_shapeType
 
int m_globalID
 
Array< OneD, Array< OneD,
NekDouble > > 
m_coeffs
 
- Static Protected Attributes inherited from Nektar::SpatialDomains::Geometry
static GeomFactorsVector m_regGeomFactorsManager
 

Detailed Description

Definition at line 48 of file PyrGeom.h.

Constructor & Destructor Documentation

Nektar::SpatialDomains::PyrGeom::PyrGeom ( )

Definition at line 51 of file PyrGeom.cpp.

References Nektar::LibUtilities::ePyramid.

Nektar::SpatialDomains::PyrGeom::PyrGeom ( const Geometry2DSharedPtr  faces[])

Copy the face shared pointers

Set up orientation vectors with correct amount of elements.

Definition at line 56 of file PyrGeom.cpp.

References Nektar::LibUtilities::ePyramid, kNedges, kNfaces, Nektar::SpatialDomains::Geometry3D::m_eorient, Nektar::SpatialDomains::Geometry3D::m_faces, Nektar::SpatialDomains::Geometry3D::m_forient, Nektar::SpatialDomains::Geometry::m_shapeType, Nektar::SpatialDomains::Geometry::m_xmap, Nektar::SpatialDomains::Geometry::SetUpCoeffs(), SetUpEdgeOrientation(), SetUpFaceOrientation(), SetUpLocalEdges(), SetUpLocalVertices(), and SetUpXmap().

56  :
57  Geometry3D(faces[0]->GetEdge(0)->GetVertex(0)->GetCoordim())
58  {
60 
61  /// Copy the face shared pointers
62  m_faces.insert(m_faces.begin(), faces, faces+PyrGeom::kNfaces);
63 
64  /// Set up orientation vectors with correct amount of elements.
65  m_eorient.resize(kNedges);
66  m_forient.resize(kNfaces);
67 
72  SetUpXmap();
73  SetUpCoeffs(m_xmap->GetNcoeffs());
74  }
StdRegions::StdExpansionSharedPtr m_xmap
Definition: Geometry.h:172
std::vector< StdRegions::Orientation > m_eorient
Definition: Geometry3D.h:92
static const int kNfaces
Definition: PyrGeom.h:60
std::vector< StdRegions::Orientation > m_forient
Definition: Geometry3D.h:93
static const int kNedges
Definition: PyrGeom.h:57
PointGeomSharedPtr GetVertex(int i) const
Definition: Geometry.h:348
const Geometry1DSharedPtr GetEdge(int i) const
LibUtilities::ShapeType m_shapeType
Definition: Geometry.h:177
void SetUpCoeffs(const int nCoeffs)
Initialise the m_coeffs array.
Definition: Geometry.h:484
void SetUpXmap()
Set up the m_xmap object by determining the order of each direction from derived faces.
Definition: PyrGeom.cpp:659
Nektar::SpatialDomains::PyrGeom::~PyrGeom ( )

Definition at line 76 of file PyrGeom.cpp.

77  {
78 
79  }

Member Function Documentation

void Nektar::SpatialDomains::PyrGeom::SetUpEdgeOrientation ( )
private

Definition at line 393 of file PyrGeom.cpp.

References ASSERTL0, Nektar::StdRegions::eBackwards, Nektar::StdRegions::eForwards, Nektar::SpatialDomains::Geometry::GetVid(), kNedges, Nektar::SpatialDomains::Geometry3D::m_edges, Nektar::SpatialDomains::Geometry3D::m_eorient, and Nektar::SpatialDomains::Geometry3D::m_verts.

Referenced by PyrGeom().

394  {
395  // This 2D array holds the local id's of all the vertices for every
396  // edge. For every edge, they are ordered to what we define as being
397  // Forwards.
398  const unsigned int edgeVerts[kNedges][2] =
399  { {0,1}, {1,2}, {3,2}, {0,3}, {0,4}, {1,4}, {2,4}, {3,4} };
400 
401  int i;
402  for (i = 0; i < kNedges; i++)
403  {
404  if (m_edges[i]->GetVid(0) == m_verts[edgeVerts[i][0]]->GetVid())
405  {
407  }
408  else if (m_edges[i]->GetVid(0) == m_verts[edgeVerts[i][1]]->GetVid())
409  {
411  }
412  else
413  {
414  ASSERTL0(false,"Could not find matching vertex for the edge");
415  }
416  }
417  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:188
std::vector< StdRegions::Orientation > m_eorient
Definition: Geometry3D.h:92
static const int kNedges
Definition: PyrGeom.h:57
int GetVid(int i) const
Definition: Geometry.h:319
void Nektar::SpatialDomains::PyrGeom::SetUpFaceOrientation ( )
private

Definition at line 419 of file PyrGeom.cpp.

References ASSERTL0, Nektar::SpatialDomains::Geometry::GetVertex(), Nektar::SpatialDomains::Geometry::GetVid(), Nektar::NekConstants::kNekZeroTol, kNfaces, kNqfaces, kNtfaces, Nektar::SpatialDomains::Geometry::m_coordim, Nektar::SpatialDomains::Geometry3D::m_faces, Nektar::SpatialDomains::Geometry3D::m_forient, and Nektar::SpatialDomains::Geometry3D::m_verts.

Referenced by PyrGeom().

420  {
421  int f,i;
422 
423  // These arrays represent the vector of the A and B coordinate of
424  // the local elemental coordinate system where A corresponds with
425  // the coordinate direction xi_i with the lowest index i (for that
426  // particular face) Coordinate 'B' then corresponds to the other
427  // local coordinate (i.e. with the highest index)
428  Array<OneD,NekDouble> elementAaxis(m_coordim);
429  Array<OneD,NekDouble> elementBaxis(m_coordim);
430 
431  // These arrays correspond to the local coordinate
432  // system of the face itself (i.e. the Geometry2D)
433  // faceAaxis correspond to the xi_0 axis
434  // faceBaxis correspond to the xi_1 axis
435  Array<OneD,NekDouble> faceAaxis(m_coordim);
436  Array<OneD,NekDouble> faceBaxis(m_coordim);
437 
438  // This is the base vertex of the face (i.e. the Geometry2D) This
439  // corresponds to thevertex with local ID 0 of the Geometry2D
440  unsigned int baseVertex;
441 
442  // The lenght of the vectors above
443  NekDouble elementAaxis_length;
444  NekDouble elementBaxis_length;
445  NekDouble faceAaxis_length;
446  NekDouble faceBaxis_length;
447 
448  // This 2D array holds the local id's of all the vertices for every
449  // face. For every face, they are ordered in such a way that the
450  // implementation below allows a unified approach for all faces.
451  const unsigned int faceVerts[kNfaces][4] = {
452  {0,1,2,3},
453  {0,1,4,0}, // Last four elements are triangles which only
454  {1,2,4,0}, // require three vertices.
455  {3,2,4,0},
456  {0,3,4,0}
457  };
458 
459  NekDouble dotproduct1 = 0.0;
460  NekDouble dotproduct2 = 0.0;
461 
462  unsigned int orientation;
463 
464  // Loop over all the faces to set up the orientation
465  for(f = 0; f < kNqfaces + kNtfaces; f++)
466  {
467  // initialisation
468  elementAaxis_length = 0.0;
469  elementBaxis_length = 0.0;
470  faceAaxis_length = 0.0;
471  faceBaxis_length = 0.0;
472 
473  dotproduct1 = 0.0;
474  dotproduct2 = 0.0;
475 
476  baseVertex = m_faces[f]->GetVid(0);
477 
478  // We are going to construct the vectors representing the A and
479  // B axis of every face. These vectors will be constructed as a
480  // vector-representation of the edges of the face. However, for
481  // both coordinate directions, we can represent the vectors by
482  // two different edges. That's why we need to make sure that we
483  // pick the edge to which the baseVertex of the
484  // Geometry2D-representation of the face belongs...
485 
486  // Compute the length of edges on a base-face
487  if (f > 0)
488  {
489  for(i = 0; i < m_coordim; i++)
490  {
491  elementAaxis[i] = (*m_verts[ faceVerts[f][1] ])[i] - (*m_verts[ faceVerts[f][0] ])[i];
492  elementBaxis[i] = (*m_verts[ faceVerts[f][2] ])[i] - (*m_verts[ faceVerts[f][0] ])[i];
493  }
494  }
495  else
496  {
497  if( baseVertex == m_verts[ faceVerts[f][0] ]->GetVid() )
498  {
499  for(i = 0; i < m_coordim; i++)
500  {
501  elementAaxis[i] = (*m_verts[ faceVerts[f][1] ])[i] - (*m_verts[ faceVerts[f][0] ])[i];
502  elementBaxis[i] = (*m_verts[ faceVerts[f][3] ])[i] - (*m_verts[ faceVerts[f][0] ])[i];
503  }
504  }
505  else if( baseVertex == m_verts[ faceVerts[f][1] ]->GetVid() )
506  {
507  for(i = 0; i < m_coordim; i++)
508  {
509  elementAaxis[i] = (*m_verts[ faceVerts[f][1] ])[i] - (*m_verts[ faceVerts[f][0] ])[i];
510  elementBaxis[i] = (*m_verts[ faceVerts[f][2] ])[i] - (*m_verts[ faceVerts[f][1] ])[i];
511  }
512  }
513  else if( baseVertex == m_verts[ faceVerts[f][2] ]->GetVid() )
514  {
515  for(i = 0; i < m_coordim; i++)
516  {
517  elementAaxis[i] = (*m_verts[ faceVerts[f][2] ])[i] - (*m_verts[ faceVerts[f][3] ])[i];
518  elementBaxis[i] = (*m_verts[ faceVerts[f][2] ])[i] - (*m_verts[ faceVerts[f][1] ])[i];
519  }
520  }
521  else if( baseVertex == m_verts[ faceVerts[f][3] ]->GetVid() )
522  {
523  for(i = 0; i < m_coordim; i++)
524  {
525  elementAaxis[i] = (*m_verts[ faceVerts[f][2] ])[i] - (*m_verts[ faceVerts[f][3] ])[i];
526  elementBaxis[i] = (*m_verts[ faceVerts[f][3] ])[i] - (*m_verts[ faceVerts[f][0] ])[i];
527  }
528  }
529  else
530  {
531  ASSERTL0(false, "Could not find matching vertex for the face");
532  }
533  }
534 
535  // Now, construct the edge-vectors of the local coordinates of
536  // the Geometry2D-representation of the face
537  for(i = 0; i < m_coordim; i++)
538  {
539  int v = m_faces[f]->GetNumVerts()-1;
540  faceAaxis[i] = (*m_faces[f]->GetVertex(1))[i] - (*m_faces[f]->GetVertex(0))[i];
541  faceBaxis[i] = (*m_faces[f]->GetVertex(v))[i] - (*m_faces[f]->GetVertex(0))[i];
542 
543  elementAaxis_length += pow(elementAaxis[i],2);
544  elementBaxis_length += pow(elementBaxis[i],2);
545  faceAaxis_length += pow(faceAaxis[i],2);
546  faceBaxis_length += pow(faceBaxis[i],2);
547  }
548 
549  elementAaxis_length = sqrt(elementAaxis_length);
550  elementBaxis_length = sqrt(elementBaxis_length);
551  faceAaxis_length = sqrt(faceAaxis_length);
552  faceBaxis_length = sqrt(faceBaxis_length);
553 
554  // Calculate the inner product of both the A-axis
555  // (i.e. Elemental A axis and face A axis)
556  for(i = 0 ; i < m_coordim; i++)
557  {
558  dotproduct1 += elementAaxis[i]*faceAaxis[i];
559  }
560 
561  orientation = 0;
562  // if the innerproduct is equal to the (absolute value of the ) products of the lengths
563  // of both vectors, then, the coordinate systems will NOT be transposed
564  if( fabs(elementAaxis_length*faceAaxis_length - fabs(dotproduct1)) < NekConstants::kNekZeroTol )
565  {
566  // if the inner product is negative, both A-axis point
567  // in reverse direction
568  if(dotproduct1 < 0.0)
569  {
570  orientation += 2;
571  }
572 
573  // calculate the inner product of both B-axis
574  for(i = 0 ; i < m_coordim; i++)
575  {
576  dotproduct2 += elementBaxis[i]*faceBaxis[i];
577  }
578 
579  // if the inner product is negative, both B-axis point
580  // in reverse direction
581  if( dotproduct2 < 0.0 )
582  {
583  orientation++;
584  }
585  }
586  // The coordinate systems are transposed
587  else
588  {
589  orientation = 4;
590 
591  // Calculate the inner product between the elemental A-axis
592  // and the B-axis of the face (which are now the corresponding axis)
593  dotproduct1 = 0.0;
594  for(i = 0 ; i < m_coordim; i++)
595  {
596  dotproduct1 += elementAaxis[i]*faceBaxis[i];
597  }
598 
599  // check that both these axis are indeed parallel
600  if (fabs(elementAaxis_length*faceBaxis_length
601  - fabs(dotproduct1)) > NekConstants::kNekZeroTol)
602  {
603  cout << "Warning: Prism axes not parallel" << endl;
604  }
605 
606  // if the result is negative, both axis point in reverse
607  // directions
608  if(dotproduct1 < 0.0)
609  {
610  orientation += 2;
611  }
612 
613  // Do the same for the other two corresponding axis
614  dotproduct2 = 0.0;
615  for(i = 0 ; i < m_coordim; i++)
616  {
617  dotproduct2 += elementBaxis[i]*faceAaxis[i];
618  }
619 
620  // check that both these axis are indeed parallel
621  if (fabs(elementBaxis_length*faceAaxis_length
622  - fabs(dotproduct2)) > NekConstants::kNekZeroTol)
623  {
624  cout << "Warning: Prism axes not parallel" << endl;
625  }
626 
627  if( dotproduct2 < 0.0 )
628  {
629  orientation++;
630  }
631  }
632 
633  orientation = orientation + 5;
634 
635  // Fill the m_forient array
636  m_forient[f] = (StdRegions::Orientation) orientation;
637  }
638  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:188
static const int kNfaces
Definition: PyrGeom.h:60
std::vector< StdRegions::Orientation > m_forient
Definition: Geometry3D.h:93
static const NekDouble kNekZeroTol
double NekDouble
PointGeomSharedPtr GetVertex(int i) const
Definition: Geometry.h:348
static const int kNtfaces
Definition: PyrGeom.h:59
static const int kNqfaces
Definition: PyrGeom.h:58
int GetVid(int i) const
Definition: Geometry.h:319
int m_coordim
coordinate dimension
Definition: Geometry.h:169
void Nektar::SpatialDomains::PyrGeom::SetUpLocalEdges ( )
private

Definition at line 215 of file PyrGeom.cpp.

References ASSERTL0, Nektar::SpatialDomains::Geometry3D::GetEdge(), Nektar::SpatialDomains::Geometry3D::GetEid(), Nektar::SpatialDomains::Geometry::GetFid(), Nektar::SpatialDomains::Geometry3D::m_edges, and Nektar::SpatialDomains::Geometry3D::m_faces.

Referenced by PyrGeom().

216  {
217  // find edge 0
218  int i,j;
219  unsigned int check;
220 
221  SegGeomSharedPtr edge;
222 
223  // First set up the 4 bottom edges
224  int f;
225  for (f = 1; f < 5; f++)
226  {
227  int nEdges = m_faces[f]->GetNumEdges();
228  check = 0;
229  for (i = 0; i < 4; i++)
230  {
231  for (j = 0; j < nEdges; j++)
232  {
233  if (m_faces[0]->GetEid(i) == m_faces[f]->GetEid(j))
234  {
235  edge = boost::dynamic_pointer_cast<SegGeom>((m_faces[0])->GetEdge(i));
236  m_edges.push_back(edge);
237  check++;
238  }
239  }
240  }
241 
242  if (check < 1)
243  {
244  std::ostringstream errstrm;
245  errstrm << "Connected faces do not share an edge. Faces ";
246  errstrm << (m_faces[0])->GetFid() << ", " << (m_faces[f])->GetFid();
247  ASSERTL0(false, errstrm.str());
248  }
249  else if (check > 1)
250  {
251  std::ostringstream errstrm;
252  errstrm << "Connected faces share more than one edge. Faces ";
253  errstrm << (m_faces[0])->GetFid() << ", " << (m_faces[f])->GetFid();
254  ASSERTL0(false, errstrm.str());
255  }
256  }
257 
258  // Then, set up the 4 vertical edges
259  check = 0;
260  for(i = 0; i < 3; i++) //Set up the vertical edge :face(1) and face(4)
261  {
262  for(j = 0; j < 3; j++)
263  {
264  if( (m_faces[1])->GetEid(i) == (m_faces[4])->GetEid(j) )
265  {
266  edge = boost::dynamic_pointer_cast<SegGeom>((m_faces[1])->GetEdge(i));
267  m_edges.push_back(edge);
268  check++;
269  }
270  }
271  }
272  if( check < 1 )
273  {
274  std::ostringstream errstrm;
275  errstrm << "Connected faces do not share an edge. Faces ";
276  errstrm << (m_faces[1])->GetFid() << ", " << (m_faces[4])->GetFid();
277  ASSERTL0(false, errstrm.str());
278  }
279  else if( check > 1)
280  {
281  std::ostringstream errstrm;
282  errstrm << "Connected faces share more than one edge. Faces ";
283  errstrm << (m_faces[1])->GetFid() << ", " << (m_faces[4])->GetFid();
284  ASSERTL0(false, errstrm.str());
285  }
286 
287  // Set up vertical edges: face(1) through face(4)
288  for (f = 1; f < 4; f++)
289  {
290  check = 0;
291  for(i = 0; i < m_faces[f]->GetNumEdges(); i++)
292  {
293  for(j = 0; j < m_faces[f+1]->GetNumEdges(); j++)
294  {
295  if( (m_faces[f])->GetEid(i) == (m_faces[f+1])->GetEid(j))
296  {
297  edge = boost::dynamic_pointer_cast<SegGeom>((m_faces[f])->GetEdge(i));
298  m_edges.push_back(edge);
299  check++;
300  }
301  }
302  }
303 
304  if( check < 1 )
305  {
306  std::ostringstream errstrm;
307  errstrm << "Connected faces do not share an edge. Faces ";
308  errstrm << (m_faces[f])->GetFid() << ", " << (m_faces[f+1])->GetFid();
309  ASSERTL0(false, errstrm.str());
310  }
311  else if( check > 1)
312  {
313  std::ostringstream errstrm;
314  errstrm << "Connected faces share more than one edge. Faces ";
315  errstrm << (m_faces[f])->GetFid() << ", " << (m_faces[f+1])->GetFid();
316  ASSERTL0(false, errstrm.str());
317  }
318  }
319  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:188
int GetEid(int i) const
Return the ID of edge i in this element.
Definition: Geometry3D.cpp:74
int GetFid(int i) const
Definition: Geometry.h:329
boost::shared_ptr< SegGeom > SegGeomSharedPtr
Definition: Geometry2D.h:60
const Geometry1DSharedPtr GetEdge(int i) const
void Nektar::SpatialDomains::PyrGeom::SetUpLocalVertices ( )
private

Definition at line 321 of file PyrGeom.cpp.

References ASSERTL0, Nektar::SpatialDomains::Geometry::GetVertex(), Nektar::SpatialDomains::Geometry::GetVid(), Nektar::SpatialDomains::Geometry3D::m_edges, and Nektar::SpatialDomains::Geometry3D::m_verts.

Referenced by PyrGeom().

322  {
323  // Set up the first 2 vertices (i.e. vertex 0,1)
324  if (m_edges[0]->GetVid(0) == m_edges[1]->GetVid(0) ||
325  m_edges[0]->GetVid(0) == m_edges[1]->GetVid(1))
326  {
327  m_verts.push_back(m_edges[0]->GetVertex(1));
328  m_verts.push_back(m_edges[0]->GetVertex(0));
329  }
330  else if (m_edges[0]->GetVid(1) == m_edges[1]->GetVid(0) ||
331  m_edges[0]->GetVid(1) == m_edges[1]->GetVid(1))
332  {
333  m_verts.push_back(m_edges[0]->GetVertex(0));
334  m_verts.push_back(m_edges[0]->GetVertex(1));
335  }
336  else
337  {
338  std::ostringstream errstrm;
339  errstrm << "Connected edges do not share a vertex. Edges ";
340  errstrm << m_edges[0]->GetEid() << ", " << m_edges[1]->GetEid();
341  ASSERTL0(false, errstrm.str());
342  }
343 
344  // set up the other bottom vertices (i.e. vertex 2,3)
345  for(int i = 1; i < 3; i++)
346  {
347  if (m_edges[i]->GetVid(0) == m_verts[i]->GetVid())
348  {
349  m_verts.push_back(m_edges[i]->GetVertex(1));
350  }
351  else if (m_edges[i]->GetVid(1) == m_verts[i]->GetVid())
352  {
353  m_verts.push_back(m_edges[i]->GetVertex(0));
354  }
355  else
356  {
357  std::ostringstream errstrm;
358  errstrm << "Connected edges do not share a vertex. Edges ";
359  errstrm << m_edges[i]->GetEid() << ", " << m_edges[i-1]->GetEid();
360  ASSERTL0(false, errstrm.str());
361  }
362  }
363 
364  // set up top vertex
365  if (m_edges[4]->GetVid(0) == m_verts[0]->GetVid())
366  {
367  m_verts.push_back(m_edges[4]->GetVertex(1));
368  }
369  else
370  {
371  m_verts.push_back(m_edges[4]->GetVertex(0));
372  }
373 
374  int check = 0;
375  for (int i = 5; i < 8; ++i)
376  {
377  if( (m_edges[i]->GetVid(0) == m_verts[i-4]->GetVid()
378  && m_edges[i]->GetVid(1) == m_verts[4]->GetVid())
379  ||(m_edges[i]->GetVid(1) == m_verts[i-4]->GetVid()
380  && m_edges[i]->GetVid(0) == m_verts[4]->GetVid()))
381  {
382  check++;
383  }
384  }
385  if (check != 3) {
386  std::ostringstream errstrm;
387  errstrm << "Connected edges do not share a vertex. Edges ";
388  errstrm << m_edges[3]->GetEid() << ", " << m_edges[2]->GetEid();
389  ASSERTL0(false, errstrm.str());
390  }
391  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:188
PointGeomSharedPtr GetVertex(int i) const
Definition: Geometry.h:348
int GetVid(int i) const
Definition: Geometry.h:319
void Nektar::SpatialDomains::PyrGeom::SetUpXmap ( )
private

Set up the m_xmap object by determining the order of each direction from derived faces.

Definition at line 659 of file PyrGeom.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::LibUtilities::eGaussLobattoLegendre, Nektar::LibUtilities::eGaussRadauMAlpha2Beta0, Nektar::LibUtilities::eModified_A, Nektar::LibUtilities::eModified_C, Nektar::SpatialDomains::Geometry::GetXmap(), Nektar::SpatialDomains::Geometry3D::m_faces, Nektar::SpatialDomains::Geometry3D::m_forient, and Nektar::SpatialDomains::Geometry::m_xmap.

Referenced by PyrGeom(), and v_Reset().

660  {
661  vector<int> tmp;
662  int order0, order1;
663 
664  if (m_forient[0] < 9)
665  {
666  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(0));
667  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(2));
668  order0 = *max_element(tmp.begin(), tmp.end());
669  }
670  else
671  {
672  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(1));
673  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(3));
674  order0 = *max_element(tmp.begin(), tmp.end());
675  }
676 
677  if (m_forient[0] < 9)
678  {
679  tmp.clear();
680  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(1));
681  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(3));
682  tmp.push_back(m_faces[2]->GetXmap()->GetEdgeNcoeffs(2));
683  order1 = *max_element(tmp.begin(), tmp.end());
684  }
685  else
686  {
687  tmp.clear();
688  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(0));
689  tmp.push_back(m_faces[0]->GetXmap()->GetEdgeNcoeffs(2));
690  tmp.push_back(m_faces[2]->GetXmap()->GetEdgeNcoeffs(2));
691  order1 = *max_element(tmp.begin(), tmp.end());
692  }
693 
694  tmp.clear();
695  tmp.push_back(order0);
696  tmp.push_back(order1);
697  tmp.push_back(m_faces[1]->GetXmap()->GetEdgeNcoeffs(1));
698  tmp.push_back(m_faces[1]->GetXmap()->GetEdgeNcoeffs(2));
699  tmp.push_back(m_faces[3]->GetXmap()->GetEdgeNcoeffs(1));
700  tmp.push_back(m_faces[3]->GetXmap()->GetEdgeNcoeffs(2));
701  int order2 = *max_element(tmp.begin(), tmp.end());
702 
703 
704  const LibUtilities::BasisKey A1(
706  LibUtilities::PointsKey(
708  const LibUtilities::BasisKey A2(
710  LibUtilities::PointsKey(
712  const LibUtilities::BasisKey C(
714  LibUtilities::PointsKey(
716 
718  A1, A2, C);
719  }
StdRegions::StdExpansionSharedPtr m_xmap
Definition: Geometry.h:172
Principle Modified Functions .
Definition: BasisType.h:51
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
Principle Modified Functions .
Definition: BasisType.h:49
StdRegions::StdExpansionSharedPtr GetXmap() const
Definition: Geometry.h:383
std::vector< StdRegions::Orientation > m_forient
Definition: Geometry3D.h:93
Gauss Radau pinned at x=-1, .
Definition: PointsType.h:58
1D Gauss-Lobatto-Legendre quadrature points
Definition: PointsType.h:50
void Nektar::SpatialDomains::PyrGeom::v_GenGeomFactors ( )
protectedvirtual

Generate the geometry factors for this element.

Reimplemented from Nektar::SpatialDomains::Geometry3D.

Definition at line 81 of file PyrGeom.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::SpatialDomains::eDeformed, Nektar::SpatialDomains::ePtsFilled, Nektar::SpatialDomains::eRegular, Nektar::NekConstants::kNekZeroTol, Nektar::SpatialDomains::Geometry::m_coeffs, Nektar::SpatialDomains::Geometry::m_coordim, Nektar::SpatialDomains::Geometry::m_geomFactors, Nektar::SpatialDomains::Geometry::m_geomFactorsState, Nektar::SpatialDomains::Geometry3D::m_verts, Nektar::SpatialDomains::Geometry::m_xmap, and Nektar::SpatialDomains::Geometry3D::v_FillGeom().

82  {
84  {
85  int i;
86  GeomType Gtype = eRegular;
87 
88  v_FillGeom();
89 
90  // check to see if expansions are linear
91  for(i = 0; i < m_coordim; ++i)
92  {
93  if (m_xmap->GetBasisNumModes(0) != 2 ||
94  m_xmap->GetBasisNumModes(1) != 2 ||
95  m_xmap->GetBasisNumModes(2) != 2 )
96  {
97  Gtype = eDeformed;
98  }
99  }
100 
101  // check to see if all quadrilateral faces are parallelograms
102  if(Gtype == eRegular)
103  {
104  // Ensure each face is a parallelogram? Check this.
105  for (i = 0; i < m_coordim; i++)
106  {
107  if( fabs( (*m_verts[0])(i) -
108  (*m_verts[1])(i) +
109  (*m_verts[2])(i) -
110  (*m_verts[3])(i) )
112  {
113  Gtype = eDeformed;
114  break;
115  }
116  }
117  }
118 
120  Gtype, m_coordim, m_xmap, m_coeffs);
122  }
123  }
StdRegions::StdExpansionSharedPtr m_xmap
Definition: Geometry.h:172
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
GeomFactorsSharedPtr m_geomFactors
Definition: Geometry.h:170
static const NekDouble kNekZeroTol
virtual void v_FillGeom()
Put all quadrature information into face/edge structure and backward transform.
Definition: Geometry3D.cpp:247
Array< OneD, Array< OneD, NekDouble > > m_coeffs
Definition: Geometry.h:180
Geometry is straight-sided with constant geometric factors.
Geometric information has been generated.
GeomType
Indicates the type of element geometry.
Geometry is curved or has non-constant factors.
int m_coordim
coordinate dimension
Definition: Geometry.h:169
int Nektar::SpatialDomains::PyrGeom::v_GetDir ( const int  faceidx,
const int  facedir 
) const
protectedvirtual

Implements Nektar::SpatialDomains::Geometry3D.

Definition at line 199 of file PyrGeom.cpp.

200  {
201  if (faceidx == 0)
202  {
203  return facedir;
204  }
205  else if (faceidx == 1 || faceidx == 3)
206  {
207  return 2 * facedir;
208  }
209  else
210  {
211  return 1 + facedir;
212  }
213  }
NekDouble Nektar::SpatialDomains::PyrGeom::v_GetLocCoords ( const Array< OneD, const NekDouble > &  coords,
Array< OneD, NekDouble > &  Lcoords 
)
protectedvirtual

Reimplemented from Nektar::SpatialDomains::Geometry.

Definition at line 125 of file PyrGeom.cpp.

References Nektar::SpatialDomains::PointGeom::dist(), Nektar::SpatialDomains::PointGeom::dot(), ErrorUtil::efatal, Nektar::SpatialDomains::eRegular, Nektar::SpatialDomains::Geometry::GetMetricInfo(), Nektar::SpatialDomains::Geometry::m_coordim, Nektar::SpatialDomains::Geometry3D::m_verts, Nektar::SpatialDomains::PointGeom::Mult(), NEKERROR, Nektar::SpatialDomains::PointGeom::Sub(), and Nektar::SpatialDomains::Geometry3D::v_FillGeom().

128  {
129  NekDouble ptdist = 1e6;
130 
131  v_FillGeom();
132 
133  // calculate local coordinate for coord
134  if(GetMetricInfo()->GetGtype() == eRegular)
135  { // Based on Spen's book, page 99
136 
137  // Point inside tetrahedron
138  PointGeom r(m_coordim, 0, coords[0], coords[1], coords[2]);
139 
140  // Edges
141  PointGeom er0, e10, e30, e40;
142  er0.Sub(r,*m_verts[0]);
143  e10.Sub(*m_verts[1],*m_verts[0]);
144  e30.Sub(*m_verts[3],*m_verts[0]);
145  e40.Sub(*m_verts[4],*m_verts[0]);
146 
147 
148  // Cross products (Normal times area)
149  PointGeom cp1030, cp3040, cp4010;
150  cp1030.Mult(e10,e30);
151  cp3040.Mult(e30,e40);
152  cp4010.Mult(e40,e10);
153 
154 
155  // Barycentric coordinates (relative volume)
156  NekDouble V = e40.dot(cp1030); // Pyramid Volume = {(e40)dot(e10)x(e30)}/4
157  NekDouble scaleFactor = 2.0/3.0;
158  NekDouble v1 = er0.dot(cp3040) / V; // volume1 = {(er0)dot(e30)x(e40)}/6
159  NekDouble v2 = er0.dot(cp4010) / V; // volume2 = {(er0)dot(e40)x(e10)}/6
160  NekDouble beta = v1 * scaleFactor;
161  NekDouble gamma = v2 * scaleFactor;
162  NekDouble delta = er0.dot(cp1030) / V; // volume3 = {(er0)dot(e10)x(e30)}/4
163 
164  // Make Pyramid bigger
165  Lcoords[0] = 2.0*beta - 1.0;
166  Lcoords[1] = 2.0*gamma - 1.0;
167  Lcoords[2] = 2.0*delta - 1.0;
168 
169  // Set ptdist to distance to nearest vertex
170  for(int i = 0; i < 5; ++i)
171  {
172  ptdist = min(ptdist,r.dist(*m_verts[i]));
173  }
174 
175  }
176  else
177  {
179  "inverse mapping must be set up to use this call");
180  }
181  return ptdist;
182  }
#define NEKERROR(type, msg)
Assert Level 0 – Fundamental assert which is used whether in FULLDEBUG, DEBUG or OPT compilation mod...
Definition: ErrorUtil.hpp:185
double NekDouble
virtual void v_FillGeom()
Put all quadrature information into face/edge structure and backward transform.
Definition: Geometry3D.cpp:247
Geometry is straight-sided with constant geometric factors.
GeomFactorsSharedPtr GetMetricInfo()
Definition: Geometry.h:299
int m_coordim
coordinate dimension
Definition: Geometry.h:169
int Nektar::SpatialDomains::PyrGeom::v_GetNumEdges ( ) const
protectedvirtual

Reimplemented from Nektar::SpatialDomains::Geometry.

Definition at line 189 of file PyrGeom.cpp.

190  {
191  return 8;
192  }
int Nektar::SpatialDomains::PyrGeom::v_GetNumFaces ( ) const
protectedvirtual

Reimplemented from Nektar::SpatialDomains::Geometry.

Definition at line 194 of file PyrGeom.cpp.

195  {
196  return 5;
197  }
int Nektar::SpatialDomains::PyrGeom::v_GetNumVerts ( ) const
protectedvirtual

Reimplemented from Nektar::SpatialDomains::Geometry.

Definition at line 184 of file PyrGeom.cpp.

185  {
186  return 5;
187  }
void Nektar::SpatialDomains::PyrGeom::v_Reset ( CurveMap curvedEdges,
CurveMap curvedFaces 
)
protectedvirtual

Reset this geometry object: unset the current state and remove allocated GeomFactors.

Reimplemented from Nektar::SpatialDomains::Geometry.

Definition at line 640 of file PyrGeom.cpp.

References Nektar::SpatialDomains::Geometry3D::m_faces, Nektar::SpatialDomains::Geometry::m_xmap, Nektar::SpatialDomains::Geometry::SetUpCoeffs(), SetUpXmap(), and Nektar::SpatialDomains::Geometry::v_Reset().

643  {
644  Geometry::v_Reset(curvedEdges, curvedFaces);
645 
646  for (int i = 0; i < 5; ++i)
647  {
648  m_faces[i]->Reset(curvedEdges, curvedFaces);
649  }
650 
651  SetUpXmap();
652  SetUpCoeffs(m_xmap->GetNcoeffs());
653  }
StdRegions::StdExpansionSharedPtr m_xmap
Definition: Geometry.h:172
virtual void v_Reset(CurveMap &curvedEdges, CurveMap &curvedFaces)
Reset this geometry object: unset the current state and remove allocated GeomFactors.
Definition: Geometry.cpp:307
void SetUpCoeffs(const int nCoeffs)
Initialise the m_coeffs array.
Definition: Geometry.h:484
void SetUpXmap()
Set up the m_xmap object by determining the order of each direction from derived faces.
Definition: PyrGeom.cpp:659

Member Data Documentation

const int Nektar::SpatialDomains::PyrGeom::kNedges = 8
static

Definition at line 57 of file PyrGeom.h.

Referenced by PyrGeom(), and SetUpEdgeOrientation().

const int Nektar::SpatialDomains::PyrGeom::kNfaces = kNqfaces + kNtfaces
static
const int Nektar::SpatialDomains::PyrGeom::kNqfaces = 1
static
const int Nektar::SpatialDomains::PyrGeom::kNtfaces = 4
static
const int Nektar::SpatialDomains::PyrGeom::kNverts = 5
static

Definition at line 56 of file PyrGeom.h.

const std::string Nektar::SpatialDomains::PyrGeom::XMLElementType
static

Definition at line 61 of file PyrGeom.h.