Nektar::Utilities::ProcessCombineAvg Class Reference

This processing module combines two fld files containing average fields. More...

#include <ProcessCombineAvg.h>

Inheritance diagram for Nektar::Utilities::ProcessCombineAvg:

Collaboration diagram for Nektar::Utilities::ProcessCombineAvg:

Public Member Functions
	ProcessCombineAvg (FieldSharedPtr f)
virtual	~ProcessCombineAvg ()
virtual void	Process (po::variables_map &vm)
	Write mesh to output file. More...
virtual std::string	GetModuleName ()
Public Member Functions inherited from Nektar::Utilities::ProcessModule
	ProcessModule ()
	ProcessModule (FieldSharedPtr p_f)
	ProcessModule (MeshSharedPtr p_m)
Public Member Functions inherited from Nektar::Utilities::Module
	Module (FieldSharedPtr p_f)
void	RegisterConfig (string key, string value)
	Register a configuration option with a module. More...
void	PrintConfig ()
	Print out all configuration options for a module. More...
void	SetDefaults ()
	Sets default configuration options for those which have not been set. More...
bool	GetRequireEquiSpaced (void)
void	SetRequireEquiSpaced (bool pVal)
void	EvaluateTriFieldAtEquiSpacedPts (LocalRegions::ExpansionSharedPtr &exp, const Array< OneD, const NekDouble > &infield, Array< OneD, NekDouble > &outfield)
	Module (MeshSharedPtr p_m)
virtual void	Process ()=0
void	RegisterConfig (std::string key, std::string value)
void	PrintConfig ()
void	SetDefaults ()
MeshSharedPtr	GetMesh ()
virtual void	ProcessVertices ()
	Extract element vertices. More...
virtual void	ProcessEdges (bool ReprocessEdges=true)
	Extract element edges. More...
virtual void	ProcessFaces (bool ReprocessFaces=true)
	Extract element faces. More...
virtual void	ProcessElements ()
	Generate element IDs. More...
virtual void	ProcessComposites ()
	Generate composites. More...
virtual void	ClearElementLinks ()

Static Public Member Functions
static boost::shared_ptr< Module >	create (FieldSharedPtr f)
	Creates an instance of this class. More...

Static Public Attributes
static ModuleKey	className

Additional Inherited Members
Protected Member Functions inherited from Nektar::Utilities::Module
	Module ()
void	ReorderPrisms (PerMap &perFaces)
	Reorder node IDs so that prisms and tetrahedra are aligned correctly. More...
void	PrismLines (int prism, PerMap &perFaces, std::set< int > &prismsDone, std::vector< ElementSharedPtr > &line)
Protected Attributes inherited from Nektar::Utilities::Module
FieldSharedPtr	m_f
	Field object. More...
map< string, ConfigOption >	m_config
	List of configuration values. More...
bool	m_requireEquiSpaced
MeshSharedPtr	m_mesh
	Mesh object. More...
std::map< std::string, ConfigOption >	m_config
	List of configuration values. More...

Detailed Description

This processing module combines two fld files containing average fields.

Definition at line 50 of file ProcessCombineAvg.h.

Constructor & Destructor Documentation

Nektar::Utilities::ProcessCombineAvg::ProcessCombineAvg

(

FieldSharedPtr

f

)

Definition at line 55 of file ProcessCombineAvg.cpp.

References ASSERTL0, and Nektar::Utilities::Module::m_config.

                                                     : ProcessModule(f)
{
    m_config["fromfld"] = ConfigOption(false, "NotSet",
                                "Fld file form which to add field");

    ASSERTL0(m_config["fromfld"].as<string>().compare("NotSet") != 0,
             "Need to specify fromfld=file.fld ");

}

Nektar::Utilities::ProcessCombineAvg::~ProcessCombineAvg ( )

virtual

Definition at line 65 of file ProcessCombineAvg.cpp.

{
}

Member Function Documentation

static boost::shared_ptr<Module> Nektar::Utilities::ProcessCombineAvg::create ( FieldSharedPtr  f )

inlinestatic

Creates an instance of this class.

Definition at line 54 of file ProcessCombineAvg.h.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

        {
            return MemoryManager<ProcessCombineAvg>::AllocateSharedPtr(f);
        }

virtual std::string Nektar::Utilities::ProcessCombineAvg::GetModuleName ( )

inlinevirtual

Implements Nektar::Utilities::Module.

Definition at line 66 of file ProcessCombineAvg.h.

        {
            return "ProcessCombineAvg";
        }

void Nektar::Utilities::ProcessCombineAvg::Process ( po::variables_map &  vm )

virtual

Write mesh to output file.

Implements Nektar::Utilities::Module.

Definition at line 69 of file ProcessCombineAvg.cpp.

References ASSERTL0, Nektar::Utilities::Module::m_config, Nektar::Utilities::Module::m_f, Vmath::Smul(), Vmath::Svtvp(), Vmath::Vadd(), Vmath::Vmul(), and Vmath::Vsub().

{
    if (m_f->m_verbose)
    {
        if(m_f->m_comm->TreatAsRankZero())
        {
            cout << "ProcessCombineAvg: Combining new fld into input avg fld..."
                 << endl;
        }
    }

    ASSERTL0(m_f->m_exp.size()  != 0,"No input expansion defined");

    int nfields   = m_f->m_fielddef[0]->m_fields.size();
    int nq        = m_f->m_exp[0]->GetTotPoints();
    int expdim    = m_f->m_graph->GetMeshDimension();
    int spacedim  = expdim;
    if ((m_f->m_fielddef[0]->m_numHomogeneousDir) == 1 ||
        (m_f->m_fielddef[0]->m_numHomogeneousDir) == 2)
    {
        spacedim += m_f->m_fielddef[0]->m_numHomogeneousDir;
    }

    // Allocate storage for new field and correction (for Reynolds stress)
    Array<OneD, Array<OneD, NekDouble> >  fromPhys(nfields);
    Array<OneD, Array<OneD, NekDouble> >  correction(nfields);
    for (int j = 0; j < nfields; ++j)
    {
        fromPhys[j]   = Array<OneD, NekDouble> (nq, 0.0);
        correction[j] = Array<OneD, NekDouble> (nq, 0.0);
    }

    string         fromfld           = m_config["fromfld"].as<string>();
    FieldSharedPtr fromField         = boost::shared_ptr<Field>(new Field());
    LibUtilities::FieldMetaDataMap     fromFieldMetaDataMap;

    // Set up ElementGIDs in case of parallel processing
    Array<OneD,int> ElementGIDs(m_f->m_exp[0]->GetExpSize());
    for (int i = 0; i < m_f->m_exp[0]->GetExpSize(); ++i)
    {
        ElementGIDs[i] = m_f->m_exp[0]->GetExp(i)->GetGeom()->GetGlobalID();
    }
    // Import fromfld file
    m_f->m_fld->Import(fromfld,
                       fromField->m_fielddef,
                       fromField->m_data,
                       fromFieldMetaDataMap,
                       ElementGIDs);
    ASSERTL0(fromField->m_fielddef[0]->m_fields.size() == nfields,
             "Mismatch in number of fields");
    // Extract data to fromPhys
    for (int j = 0; j < nfields; ++j)
    {
        ASSERTL0(fromField->m_fielddef[0]->m_fields[j] == 
                 m_f->m_fielddef[0]->m_fields[j], "Field names do not match.");

        // load new field (overwrite m_f->m_exp coeffs for now)
        for (int i = 0; i < fromField->m_data.size(); ++i)
        {
            m_f->m_exp[j]->ExtractDataToCoeffs(
                                   fromField->m_fielddef[i],
                                   fromField->m_data[i],
                                   fromField->m_fielddef[i]->m_fields[j],
                                   m_f->m_exp[j]->UpdateCoeffs());
        }
        m_f->m_exp[j]->BwdTrans(m_f->m_exp[j]->GetCoeffs(), fromPhys[j]);
    }

    // Load number of samples in each file
    ASSERTL0(m_f->m_fieldMetaDataMap.count("NumberOfFieldDumps") != 0,
             "Missing NumberOfFieldDumps metadata.");
    ASSERTL0(fromFieldMetaDataMap.count("NumberOfFieldDumps") != 0,
             "Missing NumberOfFieldDumps metadata.");
    string s_num;
    s_num  = m_f->m_fieldMetaDataMap["NumberOfFieldDumps"];
    int na = atoi(s_num.c_str());
    s_num  = fromFieldMetaDataMap["NumberOfFieldDumps"];
    int nb = atoi(s_num.c_str());

    // Look for Reynolds stresses
    int stress = -1;
    for (int j = 0; j < nfields; ++j)
    {
        if (m_f->m_fielddef[0]->m_fields[j] == "uu")
        {
            stress = j;
            break;
        }
    }

    // Calculate correction for Reynolds stresses
    if (stress != -1)
    {
        Array<OneD, NekDouble> tmp  (nq, 0.0);
        int n = stress;
        // Follow same numbering as FilterReynoldsStresses
        for (int i = 0; i < spacedim; ++i)
        {
            for (int j = i; j < spacedim; ++j, ++n)
            {
                // correction is zero for averages and
                //      = (\bar{x_a}-\bar{x_b})*(\bar{y_a}-\bar{y_b})*na*nb/N
                //      for Reynolds stresses   
                NekDouble fac = ((NekDouble) (na*nb)) / ((NekDouble) (na+nb));
                Vmath::Vsub(nq, m_f->m_exp[i]->GetPhys(), 1,
                                fromPhys[i], 1, correction[n], 1);
                Vmath::Vsub(nq, m_f->m_exp[j]->GetPhys(), 1,
                                fromPhys[j], 1, tmp, 1);
                Vmath::Vmul(nq, correction[n], 1, tmp,  1, correction[n], 1);
                Vmath::Smul(nq, fac, correction[n], 1, correction[n], 1);
            }
        }
    }
    // Combine fields
    for (int j = 0; j < nfields; ++j)
    {
        // The new value is: (x_a*na + x_b*nb + correction)/N
        Vmath::Smul(nq, 1.0*na, m_f->m_exp[j]->GetPhys(), 1,
                            m_f->m_exp[j]->UpdatePhys(), 1);
        Vmath::Svtvp(nq, 1.0*nb, fromPhys[j], 1,
                            m_f->m_exp[j]->GetPhys(), 1,
                            m_f->m_exp[j]->UpdatePhys(), 1);
        Vmath::Vadd(nq, m_f->m_exp[j]->GetPhys(), 1,
                            correction[j], 1,
                            m_f->m_exp[j]->UpdatePhys(), 1);
        Vmath::Smul(nq, 1.0/(na+nb),
                            m_f->m_exp[j]->GetPhys(), 1,
                            m_f->m_exp[j]->UpdatePhys(), 1);

        m_f->m_exp[j]->FwdTrans_IterPerExp(m_f->m_exp[j]->GetPhys(),
                            m_f->m_exp[j]->UpdateCoeffs());
    }

    // Update metadata
    m_f->m_fieldMetaDataMap["NumberOfFieldDumps"] = 
            boost::lexical_cast<std::string>(na+nb);
    NekDouble t0      = -1;
    NekDouble finTime = -1;
    if(m_f->m_fieldMetaDataMap.count("InitialTime"))
    {
        string s_t  = m_f->m_fieldMetaDataMap["InitialTime"];
        NekDouble t = atof(s_t.c_str());

        t0          = t;
    }
    if(fromFieldMetaDataMap.count("InitialTime"))
    {
        string s_t  = fromFieldMetaDataMap["InitialTime"];
        NekDouble t = atof(s_t.c_str());

        if (t0 == -1)
        {
            t0      = t;
        }
        else
        {
            t0          = std::min(t0, t);
        }
    }
    if(m_f->m_fieldMetaDataMap.count("FinalTime"))
    {
        string s_t  = m_f->m_fieldMetaDataMap["FinalTime"];
        NekDouble t = atof(s_t.c_str());

        finTime     = std::max(t0, t);
    }
    if(fromFieldMetaDataMap.count("FinalTime"))
    {
        string s_t  = fromFieldMetaDataMap["FinalTime"];
        NekDouble t = atof(s_t.c_str());

        finTime     = std::max(t0, t);
    }
    if (t0 != -1)
    {
        m_f->m_fieldMetaDataMap["InitialTime"] = 
            boost::lexical_cast<std::string>(t0);
    }
    if (finTime != -1)
    {
        m_f->m_fieldMetaDataMap["FinalTime"] = 
            boost::lexical_cast<std::string>(finTime);
    }

    // Update field def and data
    std::vector<LibUtilities::FieldDefinitionsSharedPtr> FieldDef
        = m_f->m_exp[0]->GetFieldDefinitions();
    std::vector<std::vector<NekDouble> > FieldData(FieldDef.size());
    for(int i = 0; i < nfields; ++i)
    {
        for (int j = 0; j < FieldDef.size(); ++j)
        {
            FieldDef[j]->m_fields.push_back(m_f->m_fielddef[0]->m_fields[i]);
            m_f->m_exp[i]->AppendFieldData(FieldDef[j], FieldData[j]);
        }
    }

    m_f->m_fielddef = FieldDef;
    m_f->m_data     = FieldData;
}

Member Data Documentation

ModuleKey Nektar::Utilities::ProcessCombineAvg::className

static

Initial value:

=
    GetModuleFactory().RegisterCreatorFunction(
        ModuleKey(eProcessModule, "combineAvg"),
        ProcessCombineAvg::create, "combine two fields containing averages (and possibly Reynolds stresses). Must specify fromfld.")

Definition at line 58 of file ProcessCombineAvg.h.