ExpListHomogeneous2D.h

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///////////////////////////////////////////////////////////////////////////////
//
// File ExpListHomogeneous2D.h
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Base class for expansions which are homogeneous in 2
// directions
//
///////////////////////////////////////////////////////////////////////////////
 
#ifndef EXPLISTHOMO2D_H
#define EXPLISTHOMO2D_H
#include <MultiRegions/MultiRegionsDeclspec.h>
#include <vector>
#include <MultiRegions/MultiRegions.hpp>
#include <MultiRegions/ExpList.h>
#include <LibUtilities/FFT/NektarFFT.h>
#include <LibUtilities/Communication/Transposition.h>
 
namespace Nektar
{
    namespace MultiRegions
    {
 
        enum Homogeneous2DMatType
        {
            eForwardsCoeffSpaceY1D,
            eForwardsCoeffSpaceZ1D,
            eBackwardsCoeffSpaceY1D,
            eBackwardsCoeffSpaceZ1D,
            eForwardsPhysSpaceY1D,
            eForwardsPhysSpaceZ1D,
            eBackwardsPhysSpaceY1D,
            eBackwardsPhysSpaceZ1D
        };
 
        /// A map between homo matrix keys and their associated block
        /// matrices.
        typedef std::map< Homogeneous2DMatType, DNekBlkMatSharedPtr> Homo2DBlockMatrixMap;
        /// A shared pointer to a BlockMatrixMap.
        typedef std::shared_ptr<Homo2DBlockMatrixMap> Homo2DBlockMatrixMapShPtr;
 
        // Forward declaration for typedefs
        class ExpListHomogeneous2D;
 
        /// Shared pointer to an ExpList3DHomogeneous2D object.
        typedef std::shared_ptr<ExpListHomogeneous2D>   ExpListHomogeneous2DSharedPtr;
        /// Vector of pointers to ExpList3DHomogeneous2D objects.
        typedef std::vector< ExpListHomogeneous2DSharedPtr > ExpListHomogeneous2DVector;
 
        /// Abstraction of a two-dimensional multi-elemental expansion which
        /// is merely a collection of local expansions.
        class ExpListHomogeneous2D: public ExpList
        {
        public:
            /// Default constructor.
            MULTI_REGIONS_EXPORT ExpListHomogeneous2D(const ExpansionType type);
 
            MULTI_REGIONS_EXPORT ExpListHomogeneous2D(const ExpansionType type,
                                                      const LibUtilities::SessionReaderSharedPtr &pSession,
                                                      const LibUtilities::BasisKey &HomoBasis_y,
                                                      const LibUtilities::BasisKey &HomoBasis_z,
                                                      const NekDouble ly,
                                                      const NekDouble lz,
                                                      const bool useFFT,
                                                      const bool dealiasing);
            
            /// Copy constructor.
            MULTI_REGIONS_EXPORT ExpListHomogeneous2D(const ExpListHomogeneous2D &In);
            
            MULTI_REGIONS_EXPORT ExpListHomogeneous2D(const ExpListHomogeneous2D &In,
                                                      const std::vector<unsigned int> &eIDs);
            /// Destructor.
            MULTI_REGIONS_EXPORT virtual ~ExpListHomogeneous2D();
            
            MULTI_REGIONS_EXPORT void Homogeneous2DTrans(const Array<OneD, const NekDouble> &inarray, 
                                                         Array<OneD, NekDouble> &outarray, 
                                                         bool IsForwards, 
                                                         bool Shuff = true,
                                                         bool UnShuff = true);
            
            inline void HomogeneousFwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                            Array<OneD, NekDouble> &outarray, 
                                            bool Shuff = true,
                                            bool UnShuff = true);
            
            inline void HomogeneousBwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                            Array<OneD, NekDouble> &outarray, 
                                            bool Shuff = true,
                                            bool UnShuff = true);
 
            MULTI_REGIONS_EXPORT void SetPaddingBase(void);
            
            MULTI_REGIONS_EXPORT void PhysDeriv(const Array<OneD, const NekDouble> &inarray,
                                                Array<OneD, NekDouble> &out_d0,
                                                Array<OneD, NekDouble> &out_d1, 
                                                Array<OneD, NekDouble> &out_d2);
            
            MULTI_REGIONS_EXPORT void PhysDeriv(Direction edir,
                                                const Array<OneD, const NekDouble> &inarray,
                                                Array<OneD, NekDouble> &out_d);
            
            /// FFT variables
            bool                                     m_useFFT;
            LibUtilities::NektarFFTSharedPtr        m_FFT_y;
            LibUtilities::NektarFFTSharedPtr        m_FFT_z;
            Array<OneD,NekDouble>                   m_tmpIN;
            Array<OneD,NekDouble>                   m_tmpOUT;
            
            LibUtilities::TranspositionSharedPtr      m_transposition;
            LibUtilities::CommSharedPtr               m_Ycomm;
            LibUtilities::CommSharedPtr               m_Zcomm;
            
        protected:
            
            /// Definition of the total number of degrees of freedom and
            /// quadrature points. Sets up the storage for \a m_coeff and \a
            ///  m_phys.
            LibUtilities::BasisSharedPtr    m_homogeneousBasis_y;       ///< Base expansion in y direction
            LibUtilities::BasisSharedPtr    m_homogeneousBasis_z;       ///< Base expansion in z direction
            LibUtilities::BasisSharedPtr    m_paddingBasis_y;       ///< Base expansion in y direction
            LibUtilities::BasisSharedPtr    m_paddingBasis_z;       ///< Base expansion in z direction
            NekDouble                       m_lhom_y;                   ///< Width of homogeneous direction y
            NekDouble                       m_lhom_z;                   ///< Width of homogeneous direction z
            Homo2DBlockMatrixMapShPtr       m_homogeneous2DBlockMat;
            Array<OneD, ExpListSharedPtr>   m_lines;                    ///< Vector of ExpList, will be filled with ExpList1D
            int                             m_ny;                       ///< Number of modes = number of poitns in y direction
            int                             m_nz;                       ///< Number of modes = number of poitns in z direction
            
            DNekBlkMatSharedPtr GenHomogeneous2DBlockMatrix(Homogeneous2DMatType mattype) const;
 
            DNekBlkMatSharedPtr GetHomogeneous2DBlockMatrix(Homogeneous2DMatType mattype) const;
            
            //  virtual functions
            virtual int v_GetNumElmts(void)
            {
                return m_lines[0]->GetExpSize();
            }
            
            virtual void v_FwdTrans(const Array<OneD,const NekDouble> &inarray,
                                    Array<OneD,      NekDouble> &outarray);
            
            virtual void v_FwdTrans_IterPerExp(const Array<OneD,const NekDouble> &inarray, Array<OneD,      NekDouble> &outarray);
            
            virtual void v_BwdTrans(const Array<OneD,const NekDouble> &inarray,
                                    Array<OneD,      NekDouble> &outarray);
            
            
            virtual void v_BwdTrans_IterPerExp(const Array<OneD,const NekDouble> &inarray, Array<OneD,      NekDouble> &outarray);
            
            virtual void v_IProductWRTBase(const Array<OneD, const NekDouble> &inarray, Array<OneD, NekDouble> &outarray);
            
            virtual void v_IProductWRTBase_IterPerExp(const Array<OneD, const NekDouble> &inarray, Array<OneD, NekDouble> &outarray);
            
            virtual std::vector<LibUtilities::FieldDefinitionsSharedPtr> v_GetFieldDefinitions(void);
            
            virtual void v_GetFieldDefinitions(std::vector<LibUtilities::FieldDefinitionsSharedPtr> &fielddef);
            
            virtual void v_AppendFieldData(LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector<NekDouble> &fielddata);
            
            virtual void v_AppendFieldData(LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector<NekDouble> &fielddata, Array<OneD, NekDouble> &coeffs);
            
            virtual void v_ExtractDataToCoeffs(LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector<NekDouble> &fielddata, std::string &field, Array<OneD, NekDouble> &coeffs);
            
            virtual void v_WriteVtkPieceData(std::ostream &outfile, int expansion,
                                             std::string var);
            
            virtual void v_HomogeneousFwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                               Array<OneD, NekDouble> &outarray, 
                                               bool Shuff = true,
                                               bool UnShuff = true);
            
            virtual void v_HomogeneousBwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                               Array<OneD, NekDouble> &outarray, 
                                               bool Shuff = true,
                                               bool UnShuff = true);
            
            virtual void v_DealiasedProd(const Array<OneD, NekDouble> &inarray1,
                                         const Array<OneD, NekDouble> &inarray2,
                                         Array<OneD, NekDouble> &outarray);
 
            virtual void v_DealiasedDotProd(
                const Array<OneD, Array<OneD, NekDouble> > &inarray1,
                const Array<OneD, Array<OneD, NekDouble> > &inarray2,
                Array<OneD, Array<OneD, NekDouble> > &outarray);
 
            virtual void v_PhysDeriv(const Array<OneD, const NekDouble> &inarray,
                                     Array<OneD, NekDouble> &out_d0,
                                     Array<OneD, NekDouble> &out_d1, 
                                     Array<OneD, NekDouble> &out_d2);
            
            virtual void v_PhysDeriv(Direction edir,
                                     const Array<OneD, const NekDouble> &inarray,
                                     Array<OneD, NekDouble> &out_d);
            
        private:
            
            //Padding operations variables
            bool m_dealiasing;
            int m_padsize_y;
            int m_padsize_z;
            DNekMatSharedPtr    MatFwdPAD;
            DNekMatSharedPtr    MatBwdPAD;
        };
        
        inline void ExpListHomogeneous2D::HomogeneousFwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                                              Array<OneD, NekDouble> &outarray, 
                                                              bool Shuff,
                                                              bool UnShuff)
        {
            v_HomogeneousFwdTrans(inarray,outarray,Shuff,UnShuff);
        }
        
        inline void ExpListHomogeneous2D::HomogeneousBwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                                              Array<OneD, NekDouble> &outarray, 
                                                              bool Shuff,
                                                              bool UnShuff)
        {
            v_HomogeneousBwdTrans(inarray,outarray,Shuff,UnShuff);
        }
 
    } //end of namespace
} //end of namespace
 
#endif//EXPLISTHOMO2D_H