IncNavierStokes.h

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///////////////////////////////////////////////////////////////////////////////
//
// File IncNavierStokes.h
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Basic Advection Diffusion Reaction Field definition in
// two-dimensions
//
///////////////////////////////////////////////////////////////////////////////
 
#ifndef NEKTAR_SOLVERS_INCNAVIERSTOKES_H
#define NEKTAR_SOLVERS_INCNAVIERSTOKES_H
 
#include <IncNavierStokesSolver/EquationSystems/Extrapolate.h>
#include <LibUtilities/BasicUtils/SessionReader.h>
#include <LibUtilities/BasicUtils/VmathArray.hpp>
#include <SolverUtils/AdvectionSystem.h>
#include <SolverUtils/Filters/FilterInterfaces.hpp>
#include <SolverUtils/Forcing/Forcing.h>
#include <SolverUtils/UnsteadySystem.h>
#include <boost/numeric/ublas/matrix.hpp>
#include <boost/numeric/ublas/vector.hpp>
#include <complex>
 
namespace Nektar
{
namespace bnu = boost::numeric::ublas;
 
enum EquationType
{
    eNoEquationType,
    eSteadyStokes,
    eSteadyOseen,
    eSteadyLinearisedNS,
    eUnsteadyStokes,
    eUnsteadyLinearisedNS,
    eUnsteadyNavierStokes,
    eSteadyNavierStokes,
    eEquationTypeSize
};
 
// Keep this consistent with the enums in EquationType.
const std::string kEquationTypeStr[] = {
    "NoType",
    "SteadyStokes",
    "SteadyOseen",
    "SteadyLinearisedNS",
    "UnsteadyStokes",
    "UnsteadyLinearisedNS",
    "UnsteadyNavierStokes",
    "SteadyNavierStokes",
};
 
enum AdvectionForm
{
    eNoAdvectionForm,
    eConvective,
    eNonConservative,
    eLinearised,
    eAdjoint,
    eSkewSymmetric,
    eNoAdvection,
    eAdvectionFormSize
};
 
// Keep this consistent with the enums in EquationType.
const std::string kAdvectionFormStr[] = {"NoType",
                                         "Convective",
                                         "NonConservative",
                                         "Linearised",
                                         "Adjoint",
                                         "SkewSymmetric"
                                         "NoAdvection"};
 
typedef std::complex<double> NekComplexDouble;
 
struct WomersleyParams
{
    WomersleyParams(int dim)
    {
        m_axisnormal = Array<OneD, NekDouble>(dim, 0.0);
        m_axispoint  = Array<OneD, NekDouble>(dim, 0.0);
    };
 
    virtual ~WomersleyParams(){};
 
    // Real and imaginary velocity comp. of wom
    std::vector<NekComplexDouble> m_wom_vel;
 
    // Womersley  BC constants
    NekDouble m_radius;
    NekDouble m_period;
    Array<OneD, NekDouble> m_axisnormal;
    // currently this needs to be the point in the middle of the
    // axis but should be generalised to be any point on the axis
    Array<OneD, NekDouble> m_axispoint;
 
    // poiseuille flow and fourier coefficients
    Array<OneD, Array<OneD, NekDouble>> m_poiseuille;
    Array<OneD, Array<OneD, Array<OneD, NekComplexDouble>>> m_zvel;
};
typedef std::shared_ptr<WomersleyParams> WomersleyParamsSharedPtr;
 
/**
 * \brief This class is the base class for Navier Stokes problems
 *
 */
class IncNavierStokes : public SolverUtils::AdvectionSystem,
                        public SolverUtils::FluidInterface
{
public:
    // Destructor
    virtual ~IncNavierStokes();
 
    virtual void v_InitObject(bool DeclareField = true) override;
 
    int GetNConvectiveFields(void)
    {
        return m_nConvectiveFields;
    }
 
    Array<OneD, int> &GetVelocity(void)
    {
        return m_velocity;
    }
 
    void AddForcing(const SolverUtils::ForcingSharedPtr &pForce);
 
    virtual void GetPressure(
        const Array<OneD, const Array<OneD, NekDouble>> &physfield,
        Array<OneD, NekDouble> &pressure) override;
 
    virtual void GetDensity(
        const Array<OneD, const Array<OneD, NekDouble>> &physfield,
        Array<OneD, NekDouble> &density) override;
 
    virtual bool HasConstantDensity() override
    {
        return true;
    }
 
    virtual void GetVelocity(
        const Array<OneD, const Array<OneD, NekDouble>> &physfield,
        Array<OneD, Array<OneD, NekDouble>> &velocity) override;
 
    virtual void SetMovingFrameVelocities(
        const Array<OneD, NekDouble> &vFrameVels) override;
    virtual void GetMovingFrameVelocities(
        Array<OneD, NekDouble> &vFrameVels) override;
    virtual void SetMovingFrameAngles(
        const Array<OneD, NekDouble> &vFrameTheta) override;
    virtual void GetMovingFrameAngles(
        Array<OneD, NekDouble> &vFrameTheta) override;
    virtual void SetMovingFrameProjectionMat(
        const bnu::matrix<NekDouble> &vProjMat) override;
    virtual void GetMovingFrameProjectionMat(
        bnu::matrix<NekDouble> &vProjMat) override;
 
    virtual bool DefinedForcing(const std::string &sForce);
    virtual void GetPivotPoint(Array<OneD, NekDouble> &vPivotPoint);
 
protected:
    // pointer to the extrapolation class for sub-stepping and HOPBS
 
    ExtrapolateSharedPtr m_extrapolation;
 
    /// modal energy file
    std::ofstream m_mdlFile;
 
    /// bool to identify if advection term smoothing is requested
    bool m_SmoothAdvection;
 
    /// Forcing terms
    std::vector<SolverUtils::ForcingSharedPtr> m_forcing;
 
    /// Number of fields to be convected;
    int m_nConvectiveFields;
 
    /// int which identifies which components of m_fields contains the
    /// velocity (u,v,w);
    Array<OneD, int> m_velocity;
 
    /// Pointer to field holding pressure field
    MultiRegions::ExpListSharedPtr m_pressure;
    /// Kinematic viscosity
    NekDouble m_kinvis;
    /// dump energy to file at steps time
    int m_energysteps;
 
    /// equation type;
    EquationType m_equationType;
 
    /// Mapping from BCs to Elmt IDs
    Array<OneD, Array<OneD, int>> m_fieldsBCToElmtID;
    /// Mapping from BCs to Elmt Edge IDs
    Array<OneD, Array<OneD, int>> m_fieldsBCToTraceID;
    /// RHS Factor for Radiation Condition
    Array<OneD, Array<OneD, NekDouble>> m_fieldsRadiationFactor;
 
    /// Number of time integration steps AND Order of extrapolation for
    /// pressure boundary conditions.
    int m_intSteps;
 
    // pivot point for moving reference frame
    // TODO: relocate this variable
    Array<OneD, NekDouble> m_pivotPoint;
 
    /// Constructor.
    IncNavierStokes(const LibUtilities::SessionReaderSharedPtr &pSession,
                    const SpatialDomains::MeshGraphSharedPtr &pGraph);
 
    EquationType GetEquationType(void)
    {
        return m_equationType;
    }
    static std::string eqTypeLookupIds[];
 
    void EvaluateAdvectionTerms(
        const Array<OneD, const Array<OneD, NekDouble>> &inarray,
        Array<OneD, Array<OneD, NekDouble>> &outarray, const NekDouble time);
 
    void WriteModalEnergy(void);
 
    /// time dependent boundary conditions updating
    void SetBoundaryConditions(NekDouble time);
 
    /// Set Radiation forcing term
    void SetRadiationBoundaryForcing(int fieldid);
 
    /// Set Normal Velocity Component to Zero
    void SetZeroNormalVelocity();
 
    /// Set Womersley Profile if specified
    void SetWomersleyBoundary(const int fldid, const int bndid);
 
    /// Set Up Womersley details
    void SetUpWomersley(const int fldid, const int bndid, std::string womstr);
 
    /// Set the moving reference frame boundary conditions
    void SetMovingReferenceFrameBCs(const NekDouble &time);
    void SetMRFWallBCs(const NekDouble &time);
    void SetMRFDomainVelBCs(const NekDouble &time);
 
    /// Womersley parameters if required
    std::map<int, std::map<int, WomersleyParamsSharedPtr>> m_womersleyParams;
 
    virtual MultiRegions::ExpListSharedPtr v_GetPressure() override
    {
        return m_pressure;
    }
 
    virtual void v_TransCoeffToPhys(void) override
    {
        ASSERTL0(false, "This method is not defined in this class");
    }
 
    virtual void v_TransPhysToCoeff(void) override
    {
        ASSERTL0(false, "This method is not defined in this class");
    }
 
    virtual int v_GetForceDimension() = 0;
 
    virtual Array<OneD, NekDouble> v_GetMaxStdVelocity(
        const NekDouble SpeedSoundFactor) override;
 
    virtual bool v_PreIntegrate(int step) override;
 
private:
};
 
typedef std::shared_ptr<IncNavierStokes> IncNavierStokesSharedPtr;
 
} // namespace Nektar
 
#endif // NEKTAR_SOLVERS_INCNAVIERSTOKES_H