AdvectionWeakDG.cpp

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///////////////////////////////////////////////////////////////////////////////
//
// File: AdvectionWeakDG.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
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// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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//
// Description: Weak DG advection class.
//
///////////////////////////////////////////////////////////////////////////////
 
#include <boost/core/ignore_unused.hpp>
 
#include <SolverUtils/Advection/AdvectionWeakDG.h>
#include <iomanip>
#include <iostream>
 
#include <LibUtilities/BasicUtils/Timer.h>
 
namespace Nektar
{
namespace SolverUtils
{
std::string AdvectionWeakDG::type =
    GetAdvectionFactory().RegisterCreatorFunction(
        "WeakDG", AdvectionWeakDG::create, "Weak DG");
 
AdvectionWeakDG::AdvectionWeakDG()
{
}
 
/**
 * @brief Initialise AdvectionWeakDG objects and store them before
 * starting the time-stepping.
 *
 * @param pSession  Pointer to session reader.
 * @param pFields   Pointer to fields.
 */
void AdvectionWeakDG::v_InitObject(
    LibUtilities::SessionReaderSharedPtr pSession,
    Array<OneD, MultiRegions::ExpListSharedPtr> pFields)
{
    Advection::v_InitObject(pSession, pFields);
}
 
/**
 * @brief Compute the advection term at each time-step using the
 * Discontinuous Galerkin approach (DG).
 *
 * @param nConvectiveFields   Number of fields.
 * @param fields              Pointer to fields.
 * @param advVel              Advection velocities.
 * @param inarray             Solution at the previous time-step.
 * @param outarray            Advection term to be passed at the
 *                            time integration class.
 */
void AdvectionWeakDG::v_Advect(
    const int nConvectiveFields,
    const Array<OneD, MultiRegions::ExpListSharedPtr> &fields,
    const Array<OneD, Array<OneD, NekDouble>> &advVel,
    const Array<OneD, Array<OneD, NekDouble>> &inarray,
    Array<OneD, Array<OneD, NekDouble>> &outarray, const NekDouble &time,
    const Array<OneD, Array<OneD, NekDouble>> &pFwd,
    const Array<OneD, Array<OneD, NekDouble>> &pBwd)
{
    LibUtilities::Timer timer1;
    timer1.Start();
 
    boost::ignore_unused(advVel, time);
    size_t nCoeffs = fields[0]->GetNcoeffs();
 
    Array<OneD, Array<OneD, NekDouble>> tmp{size_t(nConvectiveFields)};
    for (int i = 0; i < nConvectiveFields; ++i)
    {
        tmp[i] = Array<OneD, NekDouble>{nCoeffs, 0.0};
    }
    LibUtilities::Timer timer;
    timer.Start();
    AdvectionWeakDG::v_AdvectCoeffs(nConvectiveFields, fields, advVel, inarray,
                                    tmp, time, pFwd, pBwd);
    timer.Stop();
    timer.AccumulateRegion("AdvWeakDG:v_AdvectCoeffs", 2);
 
    // why was this broken in many loops over convective fields?
    // this is terrible for locality
 
    timer.Start();
    for (int i = 0; i < nConvectiveFields; ++i)
    {
        fields[i]->BwdTrans(tmp[i], outarray[i]);
    }
    timer.Stop();
    timer.AccumulateRegion("AdvWeakDG:_BwdTrans", 10);
    timer1.Stop();
    timer1.AccumulateRegion("AdvWeakDG:All", 10);
}
 
void AdvectionWeakDG::v_AdvectCoeffs(
    const int nConvectiveFields,
    const Array<OneD, MultiRegions::ExpListSharedPtr> &fields,
    const Array<OneD, Array<OneD, NekDouble>> &advVel,
    const Array<OneD, Array<OneD, NekDouble>> &inarray,
    Array<OneD, Array<OneD, NekDouble>> &outarray, const NekDouble &time,
    const Array<OneD, Array<OneD, NekDouble>> &pFwd,
    const Array<OneD, Array<OneD, NekDouble>> &pBwd)
{
    size_t nPointsTot      = fields[0]->GetTotPoints();
    size_t nCoeffs         = fields[0]->GetNcoeffs();
    size_t nTracePointsTot = fields[0]->GetTrace()->GetTotPoints();
 
    Array<OneD, Array<OneD, Array<OneD, NekDouble>>> fluxvector(
        nConvectiveFields);
    // Allocate storage for flux vector F(u).
    for (int i = 0; i < nConvectiveFields; ++i)
    {
        fluxvector[i] = Array<OneD, Array<OneD, NekDouble>>{size_t(m_spaceDim)};
        for (int j = 0; j < m_spaceDim; ++j)
        {
            fluxvector[i][j] = Array<OneD, NekDouble>(nPointsTot, 0.0);
        }
    }
 
    LibUtilities::Timer timer;
    timer.Start();
    v_AdvectVolumeFlux(nConvectiveFields, fields, advVel, inarray, fluxvector,
                       time);
    timer.Stop();
    timer.AccumulateRegion("AdvWeakDG:_fluxVector", 3);
 
    timer.Start();
    // Get the advection part (without numerical flux)
    for (int i = 0; i < nConvectiveFields; ++i)
    {
        Vmath::Fill(outarray[i].size(), 0.0, outarray[i], 1);
        fields[i]->IProductWRTDerivBase(fluxvector[i], outarray[i]);
    }
    timer.Stop();
    timer.AccumulateRegion("AdvWeakDG:_IProductWRTDerivBase", 10);
 
    Array<OneD, Array<OneD, NekDouble>> numflux{size_t(nConvectiveFields)};
 
    for (int i = 0; i < nConvectiveFields; ++i)
    {
        numflux[i] = Array<OneD, NekDouble>{nTracePointsTot, 0.0};
    }
 
    v_AdvectTraceFlux(nConvectiveFields, fields, advVel, inarray, numflux, time,
                      pFwd, pBwd);
 
    // Evaulate <\phi, \hat{F}\cdot n> - OutField[i]
    for (int i = 0; i < nConvectiveFields; ++i)
    {
        Vmath::Neg(nCoeffs, outarray[i], 1);
 
        timer.Start();
        fields[i]->AddTraceIntegral(numflux[i], outarray[i]);
        timer.Stop();
        timer.AccumulateRegion("AdvWeakDG:_AddTraceIntegral", 10);
 
        timer.Start();
        fields[i]->MultiplyByElmtInvMass(outarray[i], outarray[i]);
        timer.Stop();
        timer.AccumulateRegion("AdvWeakDG:_MultiplyByElmtInvMass", 10);
    }
}
 
void AdvectionWeakDG::v_AdvectTraceFlux(
    const int nConvectiveFields,
    const Array<OneD, MultiRegions::ExpListSharedPtr> &fields,
    const Array<OneD, Array<OneD, NekDouble>> &advVel,
    const Array<OneD, Array<OneD, NekDouble>> &inarray,
    Array<OneD, Array<OneD, NekDouble>> &TraceFlux, const NekDouble &time,
    const Array<OneD, Array<OneD, NekDouble>> &pFwd,
    const Array<OneD, Array<OneD, NekDouble>> &pBwd)
{
    boost::ignore_unused(advVel, time);
    int nTracePointsTot = fields[0]->GetTrace()->GetTotPoints();
 
    ASSERTL1(m_riemann, "Riemann solver must be provided for AdvectionWeakDG.");
 
    // Store forwards/backwards space along trace space
    Array<OneD, Array<OneD, NekDouble>> Fwd(nConvectiveFields);
    Array<OneD, Array<OneD, NekDouble>> Bwd(nConvectiveFields);
 
    if (pFwd == NullNekDoubleArrayOfArray || pBwd == NullNekDoubleArrayOfArray)
    {
        for (int i = 0; i < nConvectiveFields; ++i)
        {
            Fwd[i] = Array<OneD, NekDouble>(nTracePointsTot, 0.0);
            Bwd[i] = Array<OneD, NekDouble>(nTracePointsTot, 0.0);
            fields[i]->GetFwdBwdTracePhys(inarray[i], Fwd[i], Bwd[i]);
        }
    }
    else
    {
        for (int i = 0; i < nConvectiveFields; ++i)
        {
            Fwd[i] = pFwd[i];
            Bwd[i] = pBwd[i];
        }
    }
 
    LibUtilities::Timer timer;
    timer.Start();
    m_riemann->Solve(m_spaceDim, Fwd, Bwd, TraceFlux);
    timer.Stop();
    timer.AccumulateRegion("AdvWeakDG:_Riemann", 10);
}
 
void AdvectionWeakDG::v_AddVolumJacToMat(
    const Array<OneD, MultiRegions::ExpListSharedPtr> &pFields,
    const int &nConvectiveFields,
    const TensorOfArray5D<NekDouble> &ElmtJacArray,
    Array<OneD, Array<OneD, SNekBlkMatSharedPtr>> &gmtxarray)
{
    MultiRegions::ExpListSharedPtr explist              = pFields[0];
    std::shared_ptr<LocalRegions::ExpansionVector> pexp = explist->GetExp();
    int nTotElmt                                        = (*pexp).size();
    int nElmtPnt, nElmtCoef;
 
    SNekMatSharedPtr tmpGmtx;
    DNekMatSharedPtr ElmtMat;
 
    Array<OneD, NekSingle> GMat_data;
    Array<OneD, NekDouble> Elmt_data;
    Array<OneD, NekSingle> Elmt_dataSingle;
 
    Array<OneD, DNekMatSharedPtr> mtxPerVar(nTotElmt);
    Array<OneD, int> elmtpnts(nTotElmt);
    Array<OneD, int> elmtcoef(nTotElmt);
    for (int nelmt = 0; nelmt < nTotElmt; nelmt++)
    {
        nElmtCoef       = (*pexp)[nelmt]->GetNcoeffs();
        nElmtPnt        = (*pexp)[nelmt]->GetTotPoints();
        elmtpnts[nelmt] = nElmtPnt;
        elmtcoef[nelmt] = nElmtCoef;
        mtxPerVar[nelmt] =
            MemoryManager<DNekMat>::AllocateSharedPtr(nElmtCoef, nElmtPnt);
    }
 
    Array<OneD, DNekMatSharedPtr> mtxPerVarCoeff(nTotElmt);
    for (int nelmt = 0; nelmt < nTotElmt; nelmt++)
    {
        nElmtCoef = elmtcoef[nelmt];
        mtxPerVarCoeff[nelmt] =
            MemoryManager<DNekMat>::AllocateSharedPtr(nElmtCoef, nElmtCoef);
    }
 
    for (int m = 0; m < nConvectiveFields; m++)
    {
        for (int n = 0; n < nConvectiveFields; n++)
        {
            for (int nelmt = 0; nelmt < nTotElmt; nelmt++)
            {
                (*mtxPerVarCoeff[nelmt]) = 0.0;
                (*mtxPerVar[nelmt])      = 0.0;
            }
 
            explist->GetMatIpwrtDeriveBase(ElmtJacArray[m][n], mtxPerVar);
            // Memory can be saved by reusing mtxPerVar
            explist->AddRightIPTBaseMatrix(mtxPerVar, mtxPerVarCoeff);
 
            for (int nelmt = 0; nelmt < nTotElmt; nelmt++)
            {
                nElmtCoef    = elmtcoef[nelmt];
                nElmtPnt     = elmtpnts[nelmt];
                int ntotDofs = nElmtCoef * nElmtCoef;
 
                if (Elmt_dataSingle.size() < ntotDofs)
                {
                    Elmt_dataSingle = Array<OneD, NekSingle>(ntotDofs);
                }
 
                tmpGmtx = gmtxarray[m][n]->GetBlock(nelmt, nelmt);
                ElmtMat = mtxPerVarCoeff[nelmt];
 
                GMat_data = tmpGmtx->GetPtr();
                Elmt_data = ElmtMat->GetPtr();
 
                for (int i = 0; i < ntotDofs; i++)
                {
                    Elmt_dataSingle[i] = NekSingle(Elmt_data[i]);
                }
 
                Vmath::Vadd(ntotDofs, GMat_data, 1, Elmt_dataSingle, 1,
                            GMat_data, 1);
            }
        }
    }
}
 
} // end of namespace SolverUtils
} // end of namespace Nektar