SparseMatrix.hpp

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///////////////////////////////////////////////////////////////////////////////
//
// File: SparseMatrix.hpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: generic sparse matrix class templated by underlying sparse
//              storage format
//
///////////////////////////////////////////////////////////////////////////////
 
#ifndef NEKTAR_LIB_UTILITIES_LINEAR_ALGEBRA_SPARSE_MATRIX_HPP
#define NEKTAR_LIB_UTILITIES_LINEAR_ALGEBRA_SPARSE_MATRIX_HPP
 
#include <algorithm>
#include <fstream>
#include <map>
#include <utility>
#include <vector>
 
#include <LibUtilities/BasicUtils/SharedArray.hpp>
#include <LibUtilities/LinearAlgebra/SparseMatrixFwd.hpp>
 
#include <boost/call_traits.hpp>
 
namespace Nektar
{
 
/*
 * This is a class-container to a single sparse matrices.
 * The type of sparse entry is defined with template parameter.
 *
 */
template <typename SparseStorageType> class NekSparseMatrix
{
public:
    typedef SparseStorageType StorageType;
    typedef typename SparseStorageType::DataType DataType;
    typedef std::shared_ptr<SparseStorageType> SparseStorageSharedPtr;
    typedef Array<OneD, DataType> DataVectorType;
    typedef Array<OneD, const DataType> ConstDataVectorType;
 
    LIB_UTILITIES_EXPORT NekSparseMatrix(
        const SparseStorageSharedPtr &sparseStoragePtr);
    LIB_UTILITIES_EXPORT NekSparseMatrix(const NekSparseMatrix &src);
    LIB_UTILITIES_EXPORT ~NekSparseMatrix();
 
    LIB_UTILITIES_EXPORT IndexType GetRows() const;
    LIB_UTILITIES_EXPORT IndexType GetColumns() const;
    LIB_UTILITIES_EXPORT IndexType GetNumNonZeroEntries() const;
 
    LIB_UTILITIES_EXPORT const DataType GetFillInRatio() const;
    LIB_UTILITIES_EXPORT size_t GetMemoryFootprint() const;
    LIB_UTILITIES_EXPORT unsigned long GetMulCallsCounter() const;
    LIB_UTILITIES_EXPORT const DataType GetAvgRowDensity() const;
    LIB_UTILITIES_EXPORT IndexType GetBandwidth();
    LIB_UTILITIES_EXPORT COOMatTypeSharedPtr GetCooStorage();
 
    LIB_UTILITIES_EXPORT typename boost::call_traits<DataType>::const_reference
    operator()(const IndexType row, const IndexType column) const;
    LIB_UTILITIES_EXPORT typename SparseStorageType::const_iterator begin()
        const;
    LIB_UTILITIES_EXPORT typename SparseStorageType::const_iterator end() const;
 
    LIB_UTILITIES_EXPORT void Multiply(const DataVectorType &in,
                                       DataVectorType &out);
    LIB_UTILITIES_EXPORT void Multiply(const DataType *in, DataType *out);
 
    LIB_UTILITIES_EXPORT void writeSparsityPatternTo(std::ostream &out,
                                                     IndexType blockSize = 64);
    LIB_UTILITIES_EXPORT void writeBlockSparsityPatternTo(
        std::ostream &out, const IndexType blk_row = 0,
        const IndexType blk_col = 0, IndexType blockSize = 64);
 
protected:
    unsigned long m_mulCallsCounter;
    SparseStorageSharedPtr m_sparseStorage;
 
private:
};
 
} // namespace Nektar
 
#endif // NEKTAR_LIB_UTILITIES_LINEAR_ALGEBRA_SPARSE_MATRIX_HPP