StandardMatrix.hpp

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///////////////////////////////////////////////////////////////////////////////
//
// File: StandardMatrix.hpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Interface classes for matrices
//
///////////////////////////////////////////////////////////////////////////////
 
#ifndef NEKTAR_LIB_UTILITIES_LINEAR_ALGEBRA_STANDARD_MATRIX_HPP
#define NEKTAR_LIB_UTILITIES_LINEAR_ALGEBRA_STANDARD_MATRIX_HPP
 
#include <LibUtilities/LibUtilitiesDeclspec.h>
 
#include <LibUtilities/LinearAlgebra/MatrixBase.hpp>
#include <LibUtilities/LinearAlgebra/MatrixFuncs.h>
#include <LibUtilities/LinearAlgebra/NekVectorFwd.hpp>
#include <LibUtilities/LinearAlgebra/PointerWrapper.h>
 
#include <LibUtilities/BasicUtils/Vmath.hpp>
#include <LibUtilities/BasicUtils/VmathArray.hpp>
 
namespace Nektar
{
/// \brief Standard Matrix
/// \param DataType The type stored in each element.
///
/// Matrices are stored in column major order to make it easier to interoperate
/// with Blas and Lapack.
template <typename DataType>
class NekMatrix<DataType, StandardMatrixTag> : public Matrix<DataType>
{
public:
    typedef Matrix<DataType> BaseType;
    typedef NekMatrix<DataType, StandardMatrixTag> ThisType;
    typedef DataType NumberType;
    typedef const DataType &ConstGetValueType;
    typedef DataType GetValueType;
 
public:
    template <typename T, typename MatrixType> class iterator_impl
    {
    public:
        typedef T value_type;
 
        template <typename Z> struct TagType
        {
            typedef std::forward_iterator_tag type;
        };
 
        template <typename Z> struct TagType<const Z>
        {
            typedef std::input_iterator_tag type;
        };
 
        typedef typename TagType<T>::type iterator_category;
        typedef unsigned int difference_type;
        typedef typename boost::call_traits<value_type>::reference reference;
        typedef typename boost::call_traits<value_type>::const_reference
            const_reference;
        typedef typename std::remove_reference<value_type>::type *pointer;
 
    public:
        iterator_impl(pointer d, pointer e, bool isEnd = false)
            : m_data(d), m_end(e),
              m_curRow(std::numeric_limits<unsigned int>::max()),
              m_curColumn(std::numeric_limits<unsigned int>::max()),
              m_matrix(NULL),
              m_curIndex(std::numeric_limits<unsigned int>::max()),
              m_transpose('N')
        {
            if (isEnd)
            {
                m_data = m_end;
            }
        }
 
        iterator_impl(MatrixType *m, char transpose, bool isEnd = false)
            : m_data(NULL), m_end(NULL), m_curRow(0), m_curColumn(0),
              m_matrix(m), m_curIndex(0), m_transpose(transpose)
        {
            if (isEnd)
            {
                m_curRow    = std::numeric_limits<unsigned int>::max();
                m_curColumn = std::numeric_limits<unsigned int>::max();
                m_curIndex  = std::numeric_limits<unsigned int>::max();
            }
        }
 
        iterator_impl(const iterator_impl<T, MatrixType> &rhs)
            : m_data(rhs.m_data), m_end(rhs.m_end), m_curRow(rhs.m_curRow),
              m_curColumn(rhs.m_curColumn), m_matrix(rhs.m_matrix),
              m_curIndex(rhs.m_curIndex), m_transpose(rhs.m_transpose)
        {
        }
 
        iterator_impl<T, MatrixType> &operator=(
            const iterator_impl<T, MatrixType> &rhs)
        {
            m_data      = rhs.m_data;
            m_end       = rhs.m_end;
            m_curRow    = rhs.m_curRow;
            m_curColumn = rhs.m_curColumn;
            m_matrix    = rhs.m_matrix;
            m_curIndex  = rhs.m_curIndex;
            m_transpose = rhs.m_transpose;
            return *this;
        }
 
        reference operator*()
        {
            if (m_data)
            {
                ASSERTL1(
                    m_data < m_end,
                    "Attempt to dereference matrix iterator after its end.");
                return *m_data;
            }
            else
            {
                return m_matrix->GetPtr()[m_curIndex];
            }
        }
 
        const_reference operator*() const
        {
            if (m_data)
            {
                ASSERTL1(
                    m_data < m_end,
                    "Attempt to dereference matrix iterator after its end.");
                return *m_data;
            }
            else
            {
                return m_matrix->GetPtr()[m_curIndex];
            }
        }
 
        /// \brief Prefix increment operator.
        iterator_impl<T, MatrixType> &operator++()
        {
            if (m_data)
            {
                ++m_data;
            }
            else
            {
                std::tie(m_curRow, m_curColumn) =
                    m_matrix->Advance(m_curRow, m_curColumn, m_transpose);
                if (m_curRow == std::numeric_limits<unsigned int>::max())
                {
                    m_curIndex = m_curRow;
                }
                else
                {
                    m_curIndex = m_matrix->CalculateIndex(m_curRow, m_curColumn,
                                                          m_transpose);
                }
            }
            return *this;
        }
 
        /// \postfix increment operator.
        iterator_impl<T, MatrixType> operator++(int)
        {
            iterator_impl<T, MatrixType> result = *this;
            ++(*this);
            return result;
        }
 
        bool operator==(const iterator_impl<T, MatrixType> &rhs)
        {
            return m_data == rhs.m_data && m_end == rhs.m_end &&
                   m_curRow == rhs.m_curRow && m_curColumn == rhs.m_curColumn &&
                   m_matrix == rhs.m_matrix && m_curIndex == rhs.m_curIndex &&
                   m_transpose == rhs.m_transpose;
        }
 
        bool operator!=(const iterator_impl<T, MatrixType> &rhs)
        {
            return !(*this == rhs);
        }
 
    private:
        // Used when the matrix is not transposed
        T *m_data;
        T *m_end;
 
        // Used when the matrix is transposed.
        unsigned int m_curRow;
        unsigned int m_curColumn;
        MatrixType *m_matrix;
        unsigned int m_curIndex;
        char m_transpose;
    };
 
public:
    /// \brief Creates an empty matrix.
    LIB_UTILITIES_EXPORT NekMatrix();
 
    /// \brief Creates a rows by columns matrix.
    /// \brief rows The number of rows in the matrix.
    /// \brief columns The number of columns in the matrix.
    LIB_UTILITIES_EXPORT NekMatrix(
        unsigned int rows, unsigned int columns, MatrixStorage policy = eFULL,
        unsigned int subDiagonals   = std::numeric_limits<unsigned int>::max(),
        unsigned int superDiagonals = std::numeric_limits<unsigned int>::max());
 
    LIB_UTILITIES_EXPORT NekMatrix(unsigned int rows, unsigned int columns,
                                   MatrixStorage policy,
                                   unsigned int subDiagonals,
                                   unsigned int superDiagonals,
                                   unsigned int capacity);
 
    /// \brief Creates a rows by columns matrix.
    /// \brief rows The number of rows in the matrix.
    /// \brief columns The number of columns in the matrix.
    /// \brief initValue The value used to initialize each element.
    /// \brief policySpecificData Data the is specific to the storage type
    /// assigned to this matrix.
    ///                           Check MatrixStoragePolicy<StorageType> to see
    ///                           if the StoragePolicy for this matrix has
    ///                           policy specific data.
    LIB_UTILITIES_EXPORT NekMatrix(
        unsigned int rows, unsigned int columns,
        typename boost::call_traits<DataType>::const_reference initValue,
        MatrixStorage policy        = eFULL,
        unsigned int subDiagonals   = std::numeric_limits<unsigned int>::max(),
        unsigned int superDiagonals = std::numeric_limits<unsigned int>::max());
 
    /// \brief Creates a rows by columns matrix.
    /// \brief rows The number of rows in the matrix.
    /// \brief columns The number of columns in the matrix.
    /// \brief data An array of data use to initialize the matrix.
    /// \brief policySpecificData Data the is specific to the storage type
    /// assigned to this matrix.
    ///                           Check MatrixStoragePolicy<StorageType> to see
    ///                           if the StoragePolicy for this matrix has
    ///                           policy specific data.
    LIB_UTILITIES_EXPORT NekMatrix(
        unsigned int rows, unsigned int columns, const DataType *data,
        MatrixStorage policy        = eFULL,
        unsigned int subDiagonals   = std::numeric_limits<unsigned int>::max(),
        unsigned int superDiagonals = std::numeric_limits<unsigned int>::max());
 
    /// \brief Creates a rows by columns matrix.
    /// \brief rows The number of rows in the matrix.
    /// \brief columns The number of columns in the matrix.
    /// \brief d An array of data used to initialize the matrix.  Values from d
    /// are copied into the matrix. \brief policySpecificData Data the is
    /// specific to the storage type assigned to this matrix.
    ///                           Check MatrixStoragePolicy<StorageType> to see
    ///                           if the StoragePolicy for this matrix has
    ///                           policy specific data.
    LIB_UTILITIES_EXPORT NekMatrix(
        unsigned int rows, unsigned int columns,
        const Array<OneD, const DataType> &d, MatrixStorage policy = eFULL,
        unsigned int subDiagonals   = std::numeric_limits<unsigned int>::max(),
        unsigned int superDiagonals = std::numeric_limits<unsigned int>::max());
 
    /// \brief Creates a rows by columns matrix.
    /// \brief rows The number of rows in the matrix.
    /// \brief columns The number of columns in the matrix.
    /// \brief d An array of data used to initialize the matrix.  If wrapperType
    /// is eCopy, then
    ///          each element is copied from d to the matrix.  If wrapperType is
    ///          eWrapper, then the matrix uses d directly as its matrix data
    ///          and no copies are made.
    /// \brief policySpecificData Data the is specific to the storage type
    /// assigned to this matrix.
    ///                           Check MatrixStoragePolicy<StorageType> to see
    ///                           if the StoragePolicy for this matrix has
    ///                           policy specific data.
    LIB_UTILITIES_EXPORT NekMatrix(
        unsigned int rows, unsigned int columns, const Array<OneD, DataType> &d,
        PointerWrapper wrapperType = eCopy, MatrixStorage policy = eFULL,
        unsigned int subDiagonals   = std::numeric_limits<unsigned int>::max(),
        unsigned int superDiagonals = std::numeric_limits<unsigned int>::max());
 
    LIB_UTILITIES_EXPORT NekMatrix(const ThisType &rhs);
 
    LIB_UTILITIES_EXPORT ThisType &operator=(const ThisType &rhs);
 
    LIB_UTILITIES_EXPORT ThisType &operator=(const DataType &rhs);
 
    template <typename InnerMatrixType>
    ThisType &operator=(const NekMatrix<InnerMatrixType, ScaledMatrixTag> &rhs)
    {
        BaseType::operator       =(rhs);
        m_numberOfSubDiagonals   = rhs.GetNumberOfSubDiagonals();
        m_numberOfSuperDiagonals = rhs.GetNumberOfSuperDiagonals();
 
        ResizeDataArrayIfNeeded();
 
        unsigned int requiredStorageSize = GetRequiredStorageSize();
        DataType scale                   = rhs.Scale();
 
        DataType *lhs_array       = m_data.data();
        const DataType *rhs_array = rhs.GetRawPtr();
 
        for (unsigned int i = 0; i < requiredStorageSize; ++i)
        {
            lhs_array[i] = scale * rhs_array[i];
        }
 
        return *this;
    }
 
    /// \brief Returns the element value at the given row and column.
    LIB_UTILITIES_EXPORT ConstGetValueType
    operator()(unsigned int row, unsigned int column) const;
 
    class Proxy
    {
    public:
        Proxy() : m_value(defaultReturnValue)
        {
        }
        explicit Proxy(DataType &value) : m_value(value)
        {
        }
        Proxy(const Proxy &rhs) : m_value(rhs.m_value)
        {
        }
        Proxy &operator=(const Proxy &rhs)
        {
            m_value = rhs.m_value;
            return *this;
        }
 
        DataType &operator*()
        {
            return m_value;
        }
        const DataType &operator*() const
        {
            return m_value;
        }
        operator DataType &()
        {
            return m_value;
        }
        operator const DataType &() const
        {
            return m_value;
        }
        void operator=(const DataType &newValue)
        {
            if (&m_value != &defaultReturnValue)
            {
                m_value = newValue;
            }
        }
 
    private:
        DataType &m_value;
        static DataType defaultReturnValue;
    };
 
    /// \brief Returns the element value at the given row and column.
    /// \brief row The element's row.
    /// \brief column The element's column.
    /// \brief transpose If transpose = 'N', then the return value is element
    /// [row, column].
    ///                  If transpose = 'T', then the return value is element
    ///                  [column, row].
    LIB_UTILITIES_EXPORT ConstGetValueType operator()(unsigned int row,
                                                      unsigned int column,
                                                      char transpose) const;
 
    LIB_UTILITIES_EXPORT unsigned int GetRequiredStorageSize() const;
 
    LIB_UTILITIES_EXPORT unsigned int CalculateIndex(
        unsigned int row, unsigned int col, const char transpose) const;
 
    /// \brief Returns the element value at the given row and column.
    LIB_UTILITIES_EXPORT typename boost::call_traits<DataType>::const_reference
    GetValue(unsigned int row, unsigned int column) const;
 
    /// \brief Returns the element value at the given row and column.
    /// \brief row The element's row.
    /// \brief column The element's column.
    /// \brief transpose If transpose = 'N', then the return value is element
    /// [row, column].
    ///                  If transpose = 'T', then the return value is element
    ///                  [column, row].
    LIB_UTILITIES_EXPORT ConstGetValueType GetValue(unsigned int row,
                                                    unsigned int column,
                                                    char transpose) const;
 
    LIB_UTILITIES_EXPORT const Array<OneD, const DataType> &GetPtr() const;
 
    /// \brief Returns the scaling used by this matrix.
    ///
    /// Since this matrix is not a scaled matrix, this method always returns 1.
    LIB_UTILITIES_EXPORT DataType Scale() const;
 
    LIB_UTILITIES_EXPORT const DataType *GetRawPtr() const;
 
    typedef iterator_impl<const DataType, const ThisType> const_iterator;
    typedef iterator_impl<DataType, ThisType> iterator;
 
    LIB_UTILITIES_EXPORT iterator begin();
 
    LIB_UTILITIES_EXPORT iterator begin(char transpose);
 
    LIB_UTILITIES_EXPORT iterator end();
    LIB_UTILITIES_EXPORT iterator end(char transpose);
 
    LIB_UTILITIES_EXPORT const_iterator begin() const;
 
    LIB_UTILITIES_EXPORT const_iterator begin(char transpose) const;
 
    LIB_UTILITIES_EXPORT const_iterator end() const;
 
    LIB_UTILITIES_EXPORT const_iterator end(char transpose) const;
 
    LIB_UTILITIES_EXPORT unsigned int GetStorageSize() const;
 
    // Banded matrices only.
    // Get the specified number of sub diagonals, or calculate the
    // number if this object has not been initialized.
    LIB_UTILITIES_EXPORT unsigned int GetNumberOfSubDiagonals() const;
 
    LIB_UTILITIES_EXPORT unsigned int GetNumberOfSuperDiagonals() const;
 
    LIB_UTILITIES_EXPORT unsigned int CalculateNumberOfRows() const;
 
    /// \brief Returns true if the this matrix and rhs are equivalent.
    ///
    /// Two matrices are equivalent if they have the same size and each element
    /// is the same.
    LIB_UTILITIES_EXPORT bool operator==(
        const NekMatrix<DataType, StandardMatrixTag> &rhs) const;
 
    LIB_UTILITIES_EXPORT PointerWrapper GetWrapperType() const;
 
    LIB_UTILITIES_EXPORT std::tuple<unsigned int, unsigned int> Advance(
        unsigned int curRow, unsigned int curColumn) const;
 
    LIB_UTILITIES_EXPORT std::tuple<unsigned int, unsigned int> Advance(
        unsigned int curRow, unsigned int curColumn, char transpose) const;
 
    LIB_UTILITIES_EXPORT static ThisType CreateWrapper(const ThisType &rhs);
 
    LIB_UTILITIES_EXPORT static std::shared_ptr<ThisType> CreateWrapper(
        const std::shared_ptr<ThisType> &rhs);
 
    LIB_UTILITIES_EXPORT void SetSize(unsigned int rows, unsigned int cols);
 
    LIB_UTILITIES_EXPORT Proxy operator()(unsigned int row,
                                          unsigned int column);
 
    LIB_UTILITIES_EXPORT Proxy operator()(unsigned int row, unsigned int column,
                                          char transpose);
 
    LIB_UTILITIES_EXPORT void SetValue(
        unsigned int row, unsigned int column,
        typename boost::call_traits<DataType>::const_reference d);
 
    LIB_UTILITIES_EXPORT void SetValue(
        unsigned int row, unsigned int column,
        typename boost::call_traits<DataType>::const_reference d,
        char transpose);
 
    LIB_UTILITIES_EXPORT Array<OneD, DataType> &GetPtr();
 
    LIB_UTILITIES_EXPORT DataType *GetRawPtr();
 
    LIB_UTILITIES_EXPORT DataType AbsMaxtoMinEigenValueRatio(void);
 
    LIB_UTILITIES_EXPORT void EigenSolve(Array<OneD, DataType> &EigValReal,
                                         Array<OneD, DataType> &EigValImag,
                                         Array<OneD, DataType> &EigVecs);
 
    LIB_UTILITIES_EXPORT void Invert();
 
    LIB_UTILITIES_EXPORT Array<OneD, DataType> &GetTempSpace();
 
    LIB_UTILITIES_EXPORT void SwapTempAndDataBuffers();
 
    LIB_UTILITIES_EXPORT ThisType &operator*=(const NumberType &s);
 
    LIB_UTILITIES_EXPORT NekMatrix<DataType, StandardMatrixTag> operator-()
        const;
 
protected:
    LIB_UTILITIES_EXPORT NekMatrix(const ThisType &rhs,
                                   PointerWrapper wrapperType);
 
    LIB_UTILITIES_EXPORT Array<OneD, DataType> &GetData();
 
    LIB_UTILITIES_EXPORT void RemoveExcessCapacity();
 
    LIB_UTILITIES_EXPORT void ResizeDataArrayIfNeeded(
        unsigned int requiredStorageSize);
 
    LIB_UTILITIES_EXPORT void ResizeDataArrayIfNeeded();
 
    LIB_UTILITIES_EXPORT virtual
        typename boost::call_traits<DataType>::value_type
        v_GetValue(unsigned int row, unsigned int column) const override;
 
    LIB_UTILITIES_EXPORT virtual unsigned int v_GetStorageSize() const override;
 
    // We need to rethink class structure a little.  This shouldn't be
    // necessary.
    LIB_UTILITIES_EXPORT virtual void v_SetValue(
        unsigned int row, unsigned int column,
        typename boost::call_traits<DataType>::const_reference d) override;
 
private:
    LIB_UTILITIES_EXPORT void PerformCopyConstruction(const ThisType &rhs);
 
    Array<OneD, DataType> m_data;
    PointerWrapper m_wrapperType;
 
    // Only used by banded matrices.
    unsigned int m_numberOfSuperDiagonals;
    unsigned int m_numberOfSubDiagonals;
 
    // Used during chained matrix multiplication as workspace.
    Array<OneD, DataType> m_tempSpace;
};
 
template <typename DataType>
DataType NekMatrix<DataType, StandardMatrixTag>::Proxy::defaultReturnValue;
 
template <typename DataType>
LIB_UTILITIES_EXPORT NekMatrix<DataType, StandardMatrixTag> Transpose(
    NekMatrix<DataType, StandardMatrixTag> &rhs);
 
template <typename DataType>
LIB_UTILITIES_EXPORT void NegateInPlace(
    NekMatrix<DataType, StandardMatrixTag> &v);
} // namespace Nektar
 
#endif // NEKTAR_LIB_UTILITIES_LINEAR_ALGEBRA_STANDARD_MATRIX_HPP