Nektar::LibUtilities::CommMpi Class Reference

A global linear system. More...

#include <CommMpi.h>

Inheritance diagram for Nektar::LibUtilities::CommMpi:

Public Member Functions
	CommMpi (int narg, char *arg[])
virtual	~CommMpi () override
MPI_Comm	GetComm ()
Public Member Functions inherited from Nektar::LibUtilities::Comm
	Comm (int narg, char *arg[])
virtual	~Comm ()
void	Finalise ()
int	GetSize () const
	Returns number of processes. More...
int	GetRank ()
const std::string &	GetType () const
bool	TreatAsRankZero ()
bool	IsSerial ()
std::tuple< int, int, int >	GetVersion ()
void	Block ()
	Block execution until all processes reach this point. More...
NekDouble	Wtime ()
	Return the time in seconds. More...
template<class T >
void	Send (int pProc, T &pData)
template<class T >
void	Recv (int pProc, T &pData)
template<class T >
void	SendRecv (int pSendProc, T &pSendData, int pRecvProc, T &pRecvData)
template<class T >
void	AllReduce (T &pData, enum ReduceOperator pOp)
template<class T >
void	AlltoAll (T &pSendData, T &pRecvData)
template<class T1 , class T2 >
void	AlltoAllv (T1 &pSendData, T2 &pSendDataSizeMap, T2 &pSendDataOffsetMap, T1 &pRecvData, T2 &pRecvDataSizeMap, T2 &pRecvDataOffsetMap)
template<class T >
void	AllGather (T &pSendData, T &pRecvData)
template<class T >
void	AllGatherv (T &pSendData, T &pRecvData, Array< OneD, int > &pRecvDataSizeMap, Array< OneD, int > &pRecvDataOffsetMap)
template<class T >
void	AllGatherv (T &pRecvData, Array< OneD, int > &pRecvDataSizeMap, Array< OneD, int > &pRecvDataOffsetMap)
template<class T >
void	Bcast (T &pData, int pRoot)
template<class T >
T	Gather (int rootProc, T &val)
template<class T >
T	Scatter (int rootProc, T &pData)
template<class T >
void	DistGraphCreateAdjacent (T &sources, T &sourceweights, int reorder)
template<class T1 , class T2 >
void	NeighborAlltoAllv (T1 &pSendData, T2 &pSendDataSizeMap, T2 &pSendDataOffsetMap, T1 &pRecvData, T2 &pRecvDataSizeMap, T2 &pRecvDataOffsetMap)
template<class T >
void	Irsend (int pProc, T &pData, int count, const CommRequestSharedPtr &request, int loc)
template<class T >
void	Isend (int pProc, T &pData, int count, const CommRequestSharedPtr &request, int loc)
template<class T >
void	SendInit (int pProc, T &pData, int count, const CommRequestSharedPtr &request, int loc)
template<class T >
void	Irecv (int pProc, T &pData, int count, const CommRequestSharedPtr &request, int loc)
template<class T >
void	RecvInit (int pProc, T &pData, int count, const CommRequestSharedPtr &request, int loc)
void	StartAll (const CommRequestSharedPtr &request)
void	WaitAll (const CommRequestSharedPtr &request)
CommRequestSharedPtr	CreateRequest (int num)
CommSharedPtr	CommCreateIf (int flag)
	If the flag is non-zero create a new communicator. More...
void	SplitComm (int pRows, int pColumns, int pTime=1)
	Splits this communicator into a grid of size pRows*pColumns and creates row and column communicators. By default the communicator is a single row. More...
CommSharedPtr	GetRowComm ()
	Retrieve the row communicator to which this process belongs. More...
CommSharedPtr	GetColumnComm ()
	Retrieve the column communicator to which this process belongs. More...
CommSharedPtr	GetTimeComm ()
	Retrieve the time communicator to which this process belongs. More...
CommSharedPtr	GetSpaceComm ()
	Retrieve the space communicator to which this process belongs. More...
bool	RemoveExistingFiles ()
std::pair< CommSharedPtr, CommSharedPtr >	SplitCommNode ()

Static Public Member Functions
static CommSharedPtr	create (int narg, char *arg[])
	Creates an instance of this class. More...

Static Public Attributes
static std::string	className
	Name of class. More...

Protected Member Functions
	CommMpi (MPI_Comm pComm)
virtual void	v_Finalise () override
virtual int	v_GetRank () override final
virtual bool	v_TreatAsRankZero () override final
virtual bool	v_IsSerial () override final
virtual std::tuple< int, int, int >	v_GetVersion () override final
virtual void	v_Block () override final
virtual double	v_Wtime () override final
virtual void	v_Send (void *buf, int count, CommDataType dt, int dest) override final
virtual void	v_Recv (void *buf, int count, CommDataType dt, int source) override final
virtual void	v_SendRecv (void *sendbuf, int sendcount, CommDataType sendtype, int dest, void *recvbuf, int recvcount, CommDataType recvtype, int source) override final
virtual void	v_AllReduce (void *buf, int count, CommDataType dt, enum ReduceOperator pOp) override final
virtual void	v_AlltoAll (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype) override final
virtual void	v_AlltoAllv (void *sendbuf, int sendcounts[], int sensdispls[], CommDataType sendtype, void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype) override final
virtual void	v_AllGather (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype) override final
virtual void	v_AllGatherv (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype) override final
virtual void	v_AllGatherv (void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype) override final
virtual void	v_Bcast (void *buffer, int count, CommDataType dt, int root) override final
virtual void	v_Gather (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype, int root) override final
virtual void	v_Scatter (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype, int root) override final
virtual void	v_DistGraphCreateAdjacent (int indegree, const int sources[], const int sourceweights[], int reorder) override final
virtual void	v_NeighborAlltoAllv (void *sendbuf, int sendcounts[], int sensdispls[], CommDataType sendtype, void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype) override final
virtual void	v_Irsend (void *buf, int count, CommDataType dt, int dest, CommRequestSharedPtr request, int loc) override final
virtual void	v_Isend (void *buf, int count, CommDataType dt, int dest, CommRequestSharedPtr request, int loc) override final
virtual void	v_SendInit (void *buf, int count, CommDataType dt, int dest, CommRequestSharedPtr request, int loc) override final
virtual void	v_Irecv (void *buf, int count, CommDataType dt, int source, CommRequestSharedPtr request, int loc) override final
virtual void	v_RecvInit (void *buf, int count, CommDataType dt, int source, CommRequestSharedPtr request, int loc) override final
virtual void	v_StartAll (CommRequestSharedPtr request) override final
virtual void	v_WaitAll (CommRequestSharedPtr request) override final
virtual CommRequestSharedPtr	v_CreateRequest (int num) override final
virtual void	v_SplitComm (int pRows, int pColumns, int pTime) override
virtual CommSharedPtr	v_CommCreateIf (int flag) override final
virtual std::pair< CommSharedPtr, CommSharedPtr >	v_SplitCommNode () override final
Protected Member Functions inherited from Nektar::LibUtilities::Comm
	Comm ()
virtual void	v_Finalise ()=0
virtual int	v_GetRank ()=0
virtual bool	v_TreatAsRankZero ()=0
virtual bool	v_IsSerial ()=0
virtual std::tuple< int, int, int >	v_GetVersion ()=0
virtual void	v_Block ()=0
virtual NekDouble	v_Wtime ()=0
virtual void	v_Send (void *buf, int count, CommDataType dt, int dest)=0
virtual void	v_Recv (void *buf, int count, CommDataType dt, int source)=0
virtual void	v_SendRecv (void *sendbuf, int sendcount, CommDataType sendtype, int dest, void *recvbuf, int recvcount, CommDataType recvtype, int source)=0
virtual void	v_AllReduce (void *buf, int count, CommDataType dt, enum ReduceOperator pOp)=0
virtual void	v_AlltoAll (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype)=0
virtual void	v_AlltoAllv (void *sendbuf, int sendcounts[], int sensdispls[], CommDataType sendtype, void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype)=0
virtual void	v_AllGather (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype)=0
virtual void	v_AllGatherv (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype)=0
virtual void	v_AllGatherv (void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype)=0
virtual void	v_Bcast (void *buffer, int count, CommDataType dt, int root)=0
virtual void	v_Gather (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype, int root)=0
virtual void	v_Scatter (void *sendbuf, int sendcount, CommDataType sendtype, void *recvbuf, int recvcount, CommDataType recvtype, int root)=0
virtual void	v_DistGraphCreateAdjacent (int indegree, const int sources[], const int sourceweights[], int reorder)=0
virtual void	v_NeighborAlltoAllv (void *sendbuf, int sendcounts[], int sdispls[], CommDataType sendtype, void *recvbuf, int recvcounts[], int rdispls[], CommDataType recvtype)=0
virtual void	v_Irsend (void *buf, int count, CommDataType dt, int dest, CommRequestSharedPtr request, int loc)=0
virtual void	v_Isend (void *buf, int count, CommDataType dt, int dest, CommRequestSharedPtr request, int loc)=0
virtual void	v_SendInit (void *buf, int count, CommDataType dt, int dest, CommRequestSharedPtr request, int loc)=0
virtual void	v_Irecv (void *buf, int count, CommDataType dt, int source, CommRequestSharedPtr request, int loc)=0
virtual void	v_RecvInit (void *buf, int count, CommDataType dt, int source, CommRequestSharedPtr request, int loc)=0
virtual void	v_StartAll (CommRequestSharedPtr request)=0
virtual void	v_WaitAll (CommRequestSharedPtr request)=0
virtual CommRequestSharedPtr	v_CreateRequest (int num)=0
virtual void	v_SplitComm (int pRows, int pColumns, int pTime)=0
virtual CommSharedPtr	v_CommCreateIf (int flag)=0
virtual std::pair< CommSharedPtr, CommSharedPtr >	v_SplitCommNode ()

Protected Attributes
MPI_Comm	m_comm
int	m_rank {}
bool	m_controls_mpi
Protected Attributes inherited from Nektar::LibUtilities::Comm
int	m_size
	Number of processes. More...
std::string	m_type
	Type of communication. More...
CommSharedPtr	m_commRow
	Row communicator. More...
CommSharedPtr	m_commColumn
	Column communicator. More...
CommSharedPtr	m_commTime
CommSharedPtr	m_commSpace

Detailed Description

A global linear system.

Definition at line 91 of file CommMpi.h.

Constructor & Destructor Documentation

CommMpi() [1/2]

Nektar::LibUtilities::CommMpi::CommMpi	(	int	narg,
		char *	arg[]
	)

Definition at line 52 of file CommMpi.cpp.

                                      : Comm(narg, arg)
{
    int init = 0;
    MPI_Initialized(&init);
 
    if (!init)
    {
        ASSERTL0(MPI_Init(&narg, &arg) == MPI_SUCCESS,
                 "Failed to initialise MPI");
        // store bool to indicate that Nektar++ is in charge of finalizing MPI.
        m_controls_mpi = true;
    }
    else
    {
        // Another code is in charge of finalizing MPI and this is not the
        // responsiblity of Nektar++
        m_controls_mpi = false;
    }
 
    m_comm = MPI_COMM_WORLD;
    MPI_Comm_size(m_comm, &m_size);
    MPI_Comm_rank(m_comm, &m_rank);
 
#ifdef NEKTAR_USING_PETSC
    PetscInitializeNoArguments();
#endif
 
    m_type = "Parallel MPI";
}

References ASSERTL0, m_comm, m_controls_mpi, m_rank, Nektar::LibUtilities::Comm::m_size, and Nektar::LibUtilities::Comm::m_type.

Referenced by v_CommCreateIf(), v_SplitComm(), and v_SplitCommNode().

~CommMpi()

Nektar::LibUtilities::CommMpi::~CommMpi ( )

overridevirtual

Definition at line 97 of file CommMpi.cpp.

{
    int flag;
    MPI_Finalized(&flag);
    if (!flag && m_comm != MPI_COMM_WORLD)
    {
        MPI_Comm_free(&m_comm);
    }
}

References m_comm.

CommMpi() [2/2]

Nektar::LibUtilities::CommMpi::CommMpi ( MPI_Comm  pComm )

explicitprotected

Definition at line 85 of file CommMpi.cpp.

                               : Comm()
{
    m_comm = pComm;
    MPI_Comm_size(m_comm, &m_size);
    MPI_Comm_rank(m_comm, &m_rank);
 
    m_type = "Parallel MPI";
}

References m_comm, m_rank, Nektar::LibUtilities::Comm::m_size, and Nektar::LibUtilities::Comm::m_type.

Member Function Documentation

create()

static CommSharedPtr Nektar::LibUtilities::CommMpi::create ( int  narg, char *  arg[]  )

inlinestatic

Creates an instance of this class.

Definition at line 95 of file CommMpi.h.

    {
        return MemoryManager<CommMpi>::AllocateSharedPtr(narg, arg);
    }

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

GetComm()

MPI_Comm Nektar::LibUtilities::CommMpi::GetComm

(

)

Definition at line 110 of file CommMpi.cpp.

{
    return m_comm;
}

References m_comm.

v_AllGather()

void Nektar::LibUtilities::CommMpi::v_AllGather ( void *  sendbuf, int  sendcount, CommDataType  sendtype, void *  recvbuf, int  recvcount, CommDataType  recvtype  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 281 of file CommMpi.cpp.

{
    int retval = MPI_Allgather(sendbuf, sendcount, sendtype, recvbuf, recvcount,
                               recvtype, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing Allgather.");
}

References ASSERTL0, and m_comm.

v_AllGatherv() [1/2]

void Nektar::LibUtilities::CommMpi::v_AllGatherv ( void *  recvbuf, int  recvcounts[], int  rdispls[], CommDataType  recvtype  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 306 of file CommMpi.cpp.

{
    int retval = MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, recvbuf,
                                recvcounts, rdispls, recvtype, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing Allgatherv.");
}

References ASSERTL0, and m_comm.

v_AllGatherv() [2/2]

void Nektar::LibUtilities::CommMpi::v_AllGatherv ( void *  sendbuf, int  sendcount, CommDataType  sendtype, void *  recvbuf, int  recvcounts[], int  rdispls[], CommDataType  recvtype  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 293 of file CommMpi.cpp.

{
    int retval = MPI_Allgatherv(sendbuf, sendcount, sendtype, recvbuf,
                                recvcounts, rdispls, recvtype, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing Allgatherv.");
}

References ASSERTL0, and m_comm.

v_AllReduce()

void Nektar::LibUtilities::CommMpi::v_AllReduce ( void *  buf, int  count, CommDataType  dt, enum ReduceOperator  pOp  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 225 of file CommMpi.cpp.

{
    if (GetSize() == 1)
    {
        return;
    }
 
    MPI_Op vOp;
    switch (pOp)
    {
        case ReduceMax:
            vOp = MPI_MAX;
            break;
        case ReduceMin:
            vOp = MPI_MIN;
            break;
        case ReduceSum:
        default:
            vOp = MPI_SUM;
            break;
    }
    int retval = MPI_Allreduce(MPI_IN_PLACE, buf, count, dt, vOp, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing All-reduce.");
}

References ASSERTL0, Nektar::LibUtilities::Comm::GetSize(), m_comm, Nektar::LibUtilities::ReduceMax, Nektar::LibUtilities::ReduceMin, and Nektar::LibUtilities::ReduceSum.

v_AlltoAll()

void Nektar::LibUtilities::CommMpi::v_AlltoAll ( void *  sendbuf, int  sendcount, CommDataType  sendtype, void *  recvbuf, int  recvcount, CommDataType  recvtype  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 255 of file CommMpi.cpp.

{
    int retval = MPI_Alltoall(sendbuf, sendcount, sendtype, recvbuf, recvcount,
                              recvtype, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing All-to-All.");
}

References ASSERTL0, and m_comm.

v_AlltoAllv()

void Nektar::LibUtilities::CommMpi::v_AlltoAllv ( void *  sendbuf, int  sendcounts[], int  sensdispls[], CommDataType  sendtype, void *  recvbuf, int  recvcounts[], int  rdispls[], CommDataType  recvtype  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 267 of file CommMpi.cpp.

{
    int retval = MPI_Alltoallv(sendbuf, sendcounts, sdispls, sendtype, recvbuf,
                               recvcounts, rdispls, recvtype, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing All-to-All-v.");
}

References ASSERTL0, and m_comm.

v_Bcast()

void Nektar::LibUtilities::CommMpi::v_Bcast ( void *  buffer, int  count, CommDataType  dt, int  root  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 318 of file CommMpi.cpp.

{
    int retval = MPI_Bcast(buffer, count, dt, root, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing Bcast-v.");
}

References ASSERTL0, and m_comm.

v_Block()

void Nektar::LibUtilities::CommMpi::v_Block ( )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 171 of file CommMpi.cpp.

{
    MPI_Barrier(m_comm);
}

References m_comm.

v_CommCreateIf()

CommSharedPtr Nektar::LibUtilities::CommMpi::v_CommCreateIf ( int  flag )

finaloverrideprotectedvirtual

Create a new communicator if the flag is non-zero.

Implements Nektar::LibUtilities::Comm.

Definition at line 553 of file CommMpi.cpp.

{
    MPI_Comm newComm;
    // color == MPI_UNDEF => not in the new communicator
    // key == 0 on all => use rank to order them. OpenMPI, at least,
    // implies this is faster than ordering them ourselves.
    MPI_Comm_split(m_comm, flag ? flag : MPI_UNDEFINED, 0, &newComm);
 
    if (flag == 0)
    {
        // flag == 0 => get back MPI_COMM_NULL, return a null ptr instead.
        return std::shared_ptr<Comm>();
    }
    else
    {
        // Return a real communicator
        return std::shared_ptr<Comm>(new CommMpi(newComm));
    }
}

References CommMpi(), and m_comm.

Referenced by v_SplitCommNode().

v_CreateRequest()

CommRequestSharedPtr Nektar::LibUtilities::CommMpi::v_CreateRequest ( int  num )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 479 of file CommMpi.cpp.

{
    return std::shared_ptr<CommRequest>(new CommRequestMpi(num));
}

v_DistGraphCreateAdjacent()

void Nektar::LibUtilities::CommMpi::v_DistGraphCreateAdjacent ( int  indegree, const int  sources[], const int  sourceweights[], int  reorder  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 354 of file CommMpi.cpp.

{
#if MPI_VERSION < 3
    boost::ignore_unused(indegree, sources, sourceweights, reorder);
 
    ASSERTL0(false, "MPI_Dist_graph_create_adjacent is not supported in your "
                    "installed MPI version.");
#else
    int retval = MPI_Dist_graph_create_adjacent(
        m_comm, indegree, sources, sourceweights, indegree, sources,
        sourceweights, MPI_INFO_NULL, reorder, &m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS,
             "MPI error performing Dist_graph_create_adjacent.")
#endif
}

References ASSERTL0, and m_comm.

v_Finalise()

void Nektar::LibUtilities::CommMpi::v_Finalise ( )

overrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Reimplemented in Nektar::LibUtilities::CommCwipi.

Definition at line 118 of file CommMpi.cpp.

{
#ifdef NEKTAR_USING_PETSC
    PetscFinalize();
#endif
    int flag;
    MPI_Finalized(&flag);
    if ((!flag) && m_controls_mpi)
    {
        MPI_Finalize();
    }
}

References m_controls_mpi.

Referenced by Nektar::LibUtilities::CommCwipi::v_Finalise().

v_Gather()

void Nektar::LibUtilities::CommMpi::v_Gather ( void *  sendbuf, int  sendcount, CommDataType  sendtype, void *  recvbuf, int  recvcount, CommDataType  recvtype, int  root  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 328 of file CommMpi.cpp.

{
    int retval = MPI_Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount,
                            recvtype, root, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing Gather.");
}

References ASSERTL0, and m_comm.

v_GetRank()

int Nektar::LibUtilities::CommMpi::v_GetRank ( void  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 134 of file CommMpi.cpp.

{
    return m_rank;
}

References m_rank.

v_GetVersion()

std::tuple< int, int, int > Nektar::LibUtilities::CommMpi::v_GetVersion ( )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 158 of file CommMpi.cpp.

{
    int version, subversion;
    int retval = MPI_Get_version(&version, &subversion);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing GetVersion.");
 
    return std::make_tuple(version, subversion, 0);
}

References ASSERTL0.

v_Irecv()

void Nektar::LibUtilities::CommMpi::v_Irecv ( void *  buf, int  count, CommDataType  dt, int  source, CommRequestSharedPtr  request, int  loc  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 430 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    MPI_Irecv(buf, count, dt, source, 0, m_comm, req->GetRequest(loc));
}

References CG_Iterations::loc, and m_comm.

v_Irsend()

void Nektar::LibUtilities::CommMpi::v_Irsend ( void *  buf, int  count, CommDataType  dt, int  dest, CommRequestSharedPtr  request, int  loc  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 397 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    MPI_Irsend(buf, count, dt, dest, 0, m_comm, req->GetRequest(loc));
}

References CG_Iterations::loc, and m_comm.

v_Isend()

void Nektar::LibUtilities::CommMpi::v_Isend ( void *  buf, int  count, CommDataType  dt, int  dest, CommRequestSharedPtr  request, int  loc  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 408 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    MPI_Isend(buf, count, dt, dest, 0, m_comm, req->GetRequest(loc));
}

References CG_Iterations::loc, and m_comm.

v_IsSerial()

bool Nektar::LibUtilities::CommMpi::v_IsSerial ( void  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 150 of file CommMpi.cpp.

{
    return m_size == 1;
}

References Nektar::LibUtilities::Comm::m_size.

v_NeighborAlltoAllv()

void Nektar::LibUtilities::CommMpi::v_NeighborAlltoAllv ( void *  sendbuf, int  sendcounts[], int  sensdispls[], CommDataType  sendtype, void *  recvbuf, int  recvcounts[], int  rdispls[], CommDataType  recvtype  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 375 of file CommMpi.cpp.

{
#if MPI_VERSION < 3
    boost::ignore_unused(sendbuf, sendcounts, sdispls, sendtype, recvbuf,
                         recvcounts, rdispls, recvtype);
    ASSERTL0(false, "MPI_Neighbor_alltoallv is not supported in your "
                    "installed MPI version.");
#else
    int retval =
        MPI_Neighbor_alltoallv(sendbuf, sendcounts, sdispls, sendtype, recvbuf,
                               recvcounts, rdispls, recvtype, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing NeighborAllToAllV.");
#endif
}

References ASSERTL0, and m_comm.

v_Recv()

void Nektar::LibUtilities::CommMpi::v_Recv ( void *  buf, int  count, CommDataType  dt, int  source  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 202 of file CommMpi.cpp.

{
    MPI_Recv(buf, count, dt, source, 0, m_comm, MPI_STATUS_IGNORE);
}

References m_comm.

v_RecvInit()

void Nektar::LibUtilities::CommMpi::v_RecvInit ( void *  buf, int  count, CommDataType  dt, int  source, CommRequestSharedPtr  request, int  loc  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 441 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    MPI_Recv_init(buf, count, dt, source, 0, m_comm, req->GetRequest(loc));
}

References CG_Iterations::loc, and m_comm.

v_Scatter()

void Nektar::LibUtilities::CommMpi::v_Scatter ( void *  sendbuf, int  sendcount, CommDataType  sendtype, void *  recvbuf, int  recvcount, CommDataType  recvtype, int  root  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 341 of file CommMpi.cpp.

{
    int retval = MPI_Scatter(sendbuf, sendcount, sendtype, recvbuf, recvcount,
                             recvtype, root, m_comm);
 
    ASSERTL0(retval == MPI_SUCCESS, "MPI error performing Scatter.");
}

References ASSERTL0, and m_comm.

v_Send()

void Nektar::LibUtilities::CommMpi::v_Send ( void *  buf, int  count, CommDataType  dt, int  dest  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 187 of file CommMpi.cpp.

{
    if (MPISYNC)
    {
        MPI_Ssend(buf, count, dt, dest, 0, m_comm);
    }
    else
    {
        MPI_Send(buf, count, dt, dest, 0, m_comm);
    }
}

References m_comm, and MPISYNC.

v_SendInit()

void Nektar::LibUtilities::CommMpi::v_SendInit ( void *  buf, int  count, CommDataType  dt, int  dest, CommRequestSharedPtr  request, int  loc  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 419 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    MPI_Send_init(buf, count, dt, dest, 0, m_comm, req->GetRequest(loc));
}

References CG_Iterations::loc, and m_comm.

v_SendRecv()

void Nektar::LibUtilities::CommMpi::v_SendRecv ( void *  sendbuf, int  sendcount, CommDataType  sendtype, int  dest, void *  recvbuf, int  recvcount, CommDataType  recvtype, int  source  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 210 of file CommMpi.cpp.

{
    MPI_Status status;
    int retval = MPI_Sendrecv(sendbuf, sendcount, sendtype, dest, 0, recvbuf,
                              recvcount, recvtype, source, 0, m_comm, &status);
 
    ASSERTL0(retval == MPI_SUCCESS,
             "MPI error performing send-receive of data.");
}

References ASSERTL0, and m_comm.

v_SplitComm()

void Nektar::LibUtilities::CommMpi::v_SplitComm ( int  pRows, int  pColumns, int  pTime  )

overrideprotectedvirtual

Processes are considered as a grid of size pRows*pColumns. Comm objects are created corresponding to the rows and columns of this grid. The row and column to which this process belongs is stored in m_commRow and m_commColumn.

Implements Nektar::LibUtilities::Comm.

Definition at line 490 of file CommMpi.cpp.

{
    ASSERTL0(pRows * pColumns * pTime == m_size,
             "Rows/Columns/Time do not match comm size.");
 
    MPI_Comm newComm;
    MPI_Comm gridComm;
    if (pTime == 1)
    {
        // There is a bug in OpenMPI 3.1.3. This bug cause some cases to fail in
        // buster-full-build-and-test. Failed cases are:
        //
        // IncNavierStokesSolver_ChanFlow_3DH1D_FlowrateExplicit_MVM_par
        // IncNavierStokesSolver_ChanFlow_3DH1D_FlowrateExplicit_MVM_par_hybrid
 
        // See: https://github.com/open-mpi/ompi/issues/6522
 
        // Compute row and column in grid.
        int myCol = m_rank % pColumns;
        int myRow = (m_rank - myCol) / pColumns;
 
        // Split Comm into rows - all processes with same myRow are put in
        // the same communicator. The rank within this communicator is the
        // column index.
        MPI_Comm_split(m_comm, myRow, myCol, &newComm);
        m_commRow = std::shared_ptr<Comm>(new CommMpi(newComm));
 
        // Split Comm into columns - all processes with same myCol are put
        // in the same communicator. The rank within this communicator is
        // the row index.
        MPI_Comm_split(m_comm, myCol, myRow, &newComm);
        m_commColumn = std::shared_ptr<Comm>(new CommMpi(newComm));
    }
    else
    {
        constexpr int dims      = 3;
        const int sizes[dims]   = {pRows, pColumns, pTime};
        const int periods[dims] = {0, 0, 0};
        constexpr int reorder   = 1;
 
        MPI_Cart_create(m_comm, dims, sizes, periods, reorder, &gridComm);
 
        constexpr int keepRow[dims] = {0, 1, 0};
        MPI_Cart_sub(gridComm, keepRow, &newComm);
        m_commRow = std::shared_ptr<Comm>(new CommMpi(newComm));
 
        constexpr int keepCol[dims] = {1, 0, 0};
        MPI_Cart_sub(gridComm, keepCol, &newComm);
        m_commColumn = std::shared_ptr<Comm>(new CommMpi(newComm));
 
        constexpr int keepTime[dims] = {0, 0, 1};
        MPI_Cart_sub(gridComm, keepTime, &newComm);
        m_commTime = std::shared_ptr<Comm>(new CommMpi(newComm));
 
        constexpr int keepSpace[dims] = {1, 1, 0};
        MPI_Cart_sub(gridComm, keepSpace, &newComm);
        m_commSpace = std::shared_ptr<Comm>(new CommMpi(newComm));
    }
}

References ASSERTL0, CommMpi(), m_comm, Nektar::LibUtilities::Comm::m_commColumn, Nektar::LibUtilities::Comm::m_commRow, Nektar::LibUtilities::Comm::m_commSpace, Nektar::LibUtilities::Comm::m_commTime, m_rank, and Nektar::LibUtilities::Comm::m_size.

v_SplitCommNode()

std::pair< CommSharedPtr, CommSharedPtr > Nektar::LibUtilities::CommMpi::v_SplitCommNode ( )

finaloverrideprotectedvirtual

Reimplemented from Nektar::LibUtilities::Comm.

Definition at line 576 of file CommMpi.cpp.

{
    std::pair<CommSharedPtr, CommSharedPtr> ret;
 
#if MPI_VERSION < 3
    ASSERTL0(false, "Not implemented for non-MPI-3 versions.");
#else
    // Create an intra-node communicator.
    MPI_Comm nodeComm;
    MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, m_rank,
                        MPI_INFO_NULL, &nodeComm);
 
    // For rank 0 of the intra-node communicator, split the main
    // communicator. Everyone else will get a null communicator.
    ret.first  = std::shared_ptr<Comm>(new CommMpi(nodeComm));
    ret.second = CommMpi::v_CommCreateIf(ret.first->GetRank() == 0);
    if (ret.first->GetRank() == 0)
    {
        ret.second->SplitComm(1, ret.second->GetSize());
    }
#endif
 
    return ret;
}

References ASSERTL0, CommMpi(), m_rank, and v_CommCreateIf().

v_StartAll()

void Nektar::LibUtilities::CommMpi::v_StartAll ( CommRequestSharedPtr  request )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 452 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    if (req->GetNumRequest() != 0)
    {
        MPI_Startall(req->GetNumRequest(), req->GetRequest(0));
    }
}

v_TreatAsRankZero()

bool Nektar::LibUtilities::CommMpi::v_TreatAsRankZero ( void  )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 142 of file CommMpi.cpp.

{
    return m_rank == 0;
}

References m_rank.

v_WaitAll()

void Nektar::LibUtilities::CommMpi::v_WaitAll ( CommRequestSharedPtr  request )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 465 of file CommMpi.cpp.

{
    CommRequestMpiSharedPtr req =
        std::static_pointer_cast<CommRequestMpi>(request);
    if (req->GetNumRequest() != 0)
    {
        MPI_Waitall(req->GetNumRequest(), req->GetRequest(0),
                    MPI_STATUSES_IGNORE);
    }
}

v_Wtime()

double Nektar::LibUtilities::CommMpi::v_Wtime ( )

finaloverrideprotectedvirtual

Implements Nektar::LibUtilities::Comm.

Definition at line 179 of file CommMpi.cpp.

{
    return MPI_Wtime();
}

Member Data Documentation

className

std::string Nektar::LibUtilities::CommMpi::className

static

Initial value:

= GetCommFactory().RegisterCreatorFunction(
    "ParallelMPI", CommMpi::create, "Parallel communication using MPI.")

Name of class.

Definition at line 101 of file CommMpi.h.

m_comm

MPI_Comm Nektar::LibUtilities::CommMpi::m_comm

protected

Definition at line 109 of file CommMpi.h.

Referenced by Nektar::LibUtilities::CommCwipi::CommCwipi(), CommMpi(), GetComm(), v_AllGather(), v_AllGatherv(), v_AllReduce(), v_AlltoAll(), v_AlltoAllv(), v_Bcast(), v_Block(), v_CommCreateIf(), v_DistGraphCreateAdjacent(), v_Gather(), v_Irecv(), v_Irsend(), v_Isend(), v_NeighborAlltoAllv(), v_Recv(), v_RecvInit(), v_Scatter(), v_Send(), v_SendInit(), v_SendRecv(), v_SplitComm(), and ~CommMpi().

m_controls_mpi

bool Nektar::LibUtilities::CommMpi::m_controls_mpi

protected

Definition at line 111 of file CommMpi.h.

Referenced by CommMpi(), and v_Finalise().

m_rank

int Nektar::LibUtilities::CommMpi::m_rank {}

protected

Definition at line 110 of file CommMpi.h.

Referenced by Nektar::LibUtilities::CommCwipi::CommCwipi(), CommMpi(), v_GetRank(), v_SplitComm(), v_SplitCommNode(), and v_TreatAsRankZero().