CheckXmlFile.cpp

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///////////////////////////////////////////////////////////////////////////////
//
// File: CheckXmlFile.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description:
//
///////////////////////////////////////////////////////////////////////////////
 
#include <cstdio>
#include <cstdlib>
 
#include <MultiRegions/ExpList.h>
#include <SpatialDomains/MeshGraphIO.h>
 
using namespace std;
using namespace Nektar;
 
bool CheckTetRotation(
    Array<OneD, NekDouble> &xc, Array<OneD, NekDouble> &yc,
    Array<OneD, NekDouble> &xz,
    std::map<int, SpatialDomains::TetGeomSharedPtr>::iterator &tetIter, int id);
 
int main(int argc, char *argv[])
{
    Array<OneD, NekDouble> fce;
    Array<OneD, NekDouble> xc0, xc1, xc2;
 
    if (argc != 2)
    {
        fprintf(stderr, "Usage: CheckXmlFile  meshfile.xml\n");
        exit(1);
    }
 
    LibUtilities::SessionReaderSharedPtr vSession =
        LibUtilities::SessionReader::CreateInstance(argc, argv);
 
    //----------------------------------------------
    // Read in mesh from input file
    string meshfile(argv[argc - 1]);
    SpatialDomains::MeshGraphSharedPtr mesh =
        SpatialDomains::MeshGraphIO::Read(vSession);
    //----------------------------------------------
 
    //----------------------------------------------
    // Define Expansion
    int expdim = mesh->GetMeshDimension();
 
    switch (expdim)
    {
        case 1:
            ASSERTL0(false, "1D not set up");
            break;
        case 2:
        {
            NekDouble x, y, z;
            string outname(strtok(argv[argc - 1], "."));
            outname += ".dat";
            FILE *fp = fopen(outname.c_str(), "w");
 
            SpatialDomains::TriGeomMap trigeom   = mesh->GetAllTriGeoms();
            SpatialDomains::QuadGeomMap quadgeom = mesh->GetAllQuadGeoms();
 
            int nverts = mesh->GetNvertices();
 
            Array<OneD, NekDouble> xc(nverts), yc(nverts), zc(nverts);
 
            for (int i = 0; i < nverts; ++i)
            {
                mesh->GetVertex(i)->GetCoords(x, y, z);
                xc[i] = x;
                yc[i] = y;
                zc[i] = z;
            }
 
            std::map<int, SpatialDomains::TriGeomSharedPtr>::iterator triIter;
            for (triIter = trigeom.begin(); triIter != trigeom.end(); ++triIter)
            {
                fprintf(fp, "%d %d %d %d\n", (triIter->second)->GetVid(0) + 1,
                        (triIter->second)->GetVid(1) + 1,
                        (triIter->second)->GetVid(2) + 1,
                        (triIter->second)->GetVid(2) + 1);
            }
 
            std::map<int, SpatialDomains::QuadGeomSharedPtr>::iterator quadIter;
            for (quadIter = quadgeom.begin(); quadIter != quadgeom.end();
                 ++quadIter)
            {
                fprintf(fp, "%d %d %d %d\n", (quadIter->second)->GetVid(0) + 1,
                        (quadIter->second)->GetVid(1) + 1,
                        (quadIter->second)->GetVid(2) + 1,
                        (quadIter->second)->GetVid(3) + 1);
            }
        }
        break;
        case 3:
        {
            NekDouble x, y, z;
            string outname(strtok(argv[argc - 1], "."));
            outname += ".dat";
 
            SpatialDomains::TetGeomMap tetgeom     = mesh->GetAllTetGeoms();
            SpatialDomains::PyrGeomMap pyrgeom     = mesh->GetAllPyrGeoms();
            SpatialDomains::PrismGeomMap prismgeom = mesh->GetAllPrismGeoms();
            SpatialDomains::HexGeomMap hexgeom     = mesh->GetAllHexGeoms();
 
            int nverts = mesh->GetNvertices();
 
            Array<OneD, NekDouble> xc(nverts), yc(nverts), zc(nverts);
 
            for (int i = 0; i < nverts; ++i)
            {
                // Check element roation
                mesh->GetVertex(i)->GetCoords(x, y, z);
                xc[i] = x;
                yc[i] = y;
                zc[i] = z;
            }
 
            for (int i = 0; i < nverts; ++i)
            {
                for (int j = i + 1; j < nverts; ++j)
                {
                    if ((xc[i] - xc[j]) * (xc[i] - xc[j]) +
                            (yc[i] - yc[j]) * (yc[i] - yc[j]) +
                            (zc[i] - zc[j]) * (zc[i] - zc[j]) <
                        1e-10)
                    {
                        cout << "Duplicate vertices: " << i << " " << j << endl;
                    }
                }
            }
 
            std::map<int, SpatialDomains::TetGeomSharedPtr>::iterator tetIter;
            int cnt                  = 0;
            bool NoRotateIssues      = true;
            bool NoOrientationIssues = true;
            for (tetIter = tetgeom.begin(); tetIter != tetgeom.end(); ++tetIter)
            {
                // check rotation and dump
                NoOrientationIssues =
                    CheckTetRotation(xc, yc, zc, tetIter, cnt++);
 
                // Check face rotation
                if ((tetIter->second)->GetFace(0)->GetVid(2) !=
                    (tetIter->second)->GetVid(2))
                {
                    cout << "ERROR: Face " << tetIter->second->GetFid(0)
                         << " (vert "
                         << (tetIter->second)->GetFace(0)->GetVid(2)
                         << ") is not aligned with base vertex of Tet "
                         << (tetIter->second)->GetGlobalID() << " (vert "
                         << (tetIter->second)->GetVid(2) << ")" << endl;
                    NoRotateIssues = false;
                }
 
                for (int i = 1; i < 4; ++i)
 
                {
                    if ((tetIter->second)->GetFace(i)->GetVid(2) !=
                        (tetIter->second)->GetVid(3))
                    {
                        cout << "ERROR: Face " << tetIter->second->GetFid(i)
                             << " is not aligned with top Vertex of Tet "
                             << (tetIter->second)->GetGlobalID() << endl;
                        NoRotateIssues = false;
                    }
                }
            }
            if (NoOrientationIssues)
            {
                cout << "All Tet have correct ordering for anticlockwise "
                        "rotation"
                     << endl;
            }
 
            if (NoRotateIssues)
            {
                cout << "All Tet faces are correctly aligned" << endl;
            }
 
            std::map<int, SpatialDomains::PyrGeomSharedPtr>::iterator pyrIter;
            for (pyrIter = pyrgeom.begin(); pyrIter != pyrgeom.end(); ++pyrIter)
            {
                // Put pyramid checks in here
            }
 
            // Put prism checks in here
            std::map<int, SpatialDomains::PrismGeomSharedPtr>::iterator Iter;
            NoRotateIssues      = true;
            NoOrientationIssues = true;
            for (Iter = prismgeom.begin(); Iter != prismgeom.end(); ++Iter)
            {
 
                // Check face rotation
                if ((Iter->second)->GetFace(1)->GetVid(2) !=
                    (Iter->second)->GetVid(4))
                {
                    cout << "ERROR: Face " << Iter->second->GetFid(1)
                         << " (vert " << (Iter->second)->GetFace(1)->GetVid(2)
                         << ") not aligned to face 1 singular vert of Prism "
                         << (Iter->second)->GetGlobalID() << " (vert "
                         << (Iter->second)->GetVid(4) << ")" << endl;
                    NoRotateIssues = false;
                }
 
                // Check face rotation
                if ((Iter->second)->GetFace(3)->GetVid(2) !=
                    (Iter->second)->GetVid(5))
                {
                    cout << "ERROR: Face " << Iter->second->GetFid(3)
                         << " (vert " << (Iter->second)->GetFace(3)->GetVid(2)
                         << ") not aligned to face 3 singular vert of Prism "
                         << (Iter->second)->GetGlobalID() << " (vert "
                         << (Iter->second)->GetVid(5) << ")" << endl;
                    NoRotateIssues = false;
                }
            }
 
            if (NoRotateIssues)
            {
                cout << "All Prism Tri faces are correctly aligned" << endl;
            }
 
            std::map<int, SpatialDomains::HexGeomSharedPtr>::iterator hexIter;
            for (hexIter = hexgeom.begin(); hexIter != hexgeom.end(); ++hexIter)
            {
                // PUt Hex checks in here
            }
        }
 
        break;
        default:
            ASSERTL0(false, "Expansion dimension not recognised");
            break;
    }
 
    //-----------------------------------------------
 
    return 0;
}
 
class Ord
{
public:
    double x;
    double y;
    double z;
};
 
bool CheckTetRotation(
    Array<OneD, NekDouble> &xc, Array<OneD, NekDouble> &yc,
    Array<OneD, NekDouble> &zc,
    std::map<int, SpatialDomains::TetGeomSharedPtr>::iterator &tetIter, int id)
{
    bool RotationOK = true;
    Ord v[4];
    NekDouble abx, aby, abz;
 
    v[0].x = xc[(tetIter->second)->GetVid(0)];
    v[0].y = yc[(tetIter->second)->GetVid(0)];
    v[0].z = zc[(tetIter->second)->GetVid(0)];
 
    v[1].x = xc[(tetIter->second)->GetVid(1)];
    v[1].y = yc[(tetIter->second)->GetVid(1)];
    v[1].z = zc[(tetIter->second)->GetVid(1)];
 
    v[2].x = xc[(tetIter->second)->GetVid(2)];
    v[2].y = yc[(tetIter->second)->GetVid(2)];
    v[2].z = zc[(tetIter->second)->GetVid(2)];
 
    v[3].x = xc[(tetIter->second)->GetVid(3)];
    v[3].y = yc[(tetIter->second)->GetVid(3)];
    v[3].z = zc[(tetIter->second)->GetVid(3)];
 
    // cross product of edge 0 and 2
    abx = (v[1].y - v[0].y) * (v[2].z - v[0].z) -
          (v[1].z - v[0].z) * (v[2].y - v[0].y);
    aby = (v[1].z - v[0].z) * (v[2].x - v[0].x) -
          (v[1].x - v[0].x) * (v[2].z - v[0].z);
    abz = (v[1].x - v[0].x) * (v[2].y - v[0].y) -
          (v[1].y - v[0].y) * (v[2].x - v[0].x);
 
    // inner product of cross product with respect to edge 3 should be positive
    if (((v[3].x - v[0].x) * abx + (v[3].y - v[0].y) * aby +
         (v[3].z - v[0].z) * abz) < 0.0)
    {
        cerr << "ERROR: Element " << id + 1 << "is NOT counter-clockwise\n"
             << endl;
        RotationOK = false;
    }
    return RotationOK;
}