Nektar++
Static Public Member Functions | Static Public Attributes | Protected Member Functions | Friends | List of all members
Nektar::GlobalMapping::MappingXYofZ Class Reference

#include <MappingXYofZ.h>

Inheritance diagram for Nektar::GlobalMapping::MappingXYofZ:
[legend]

Static Public Member Functions

static GLOBAL_MAPPING_EXPORT MappingSharedPtr create (const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const TiXmlElement *pMapping)
 Creates an instance of this class. More...
 
- Static Public Member Functions inherited from Nektar::GlobalMapping::Mapping
static GLOBAL_MAPPING_EXPORT MappingSharedPtr Load (const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
 Return a pointer to the mapping, creating it on first call. More...
 

Static Public Attributes

static std::string className
 Name of the class. More...
 

Protected Member Functions

 MappingXYofZ (const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
 
GLOBAL_MAPPING_EXPORT void v_InitObject (const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const TiXmlElement *pMapping) override
 
GLOBAL_MAPPING_EXPORT void v_ContravarToCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_CovarToCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_ContravarFromCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_CovarFromCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_GetJacobian (Array< OneD, NekDouble > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_DotGradJacobian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_GetMetricTensor (Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_GetInvMetricTensor (Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_ApplyChristoffelContravar (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_ApplyChristoffelCovar (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray) override
 
GLOBAL_MAPPING_EXPORT void v_UpdateGeomInfo () override
 
- Protected Member Functions inherited from Nektar::GlobalMapping::Mapping
GLOBAL_MAPPING_EXPORT Mapping (const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
 Constructor. More...
 
GLOBAL_MAPPING_EXPORT void EvaluateFunction (Array< OneD, MultiRegions::ExpListSharedPtr > pFields, LibUtilities::SessionReaderSharedPtr pSession, std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, NekDouble pTime=NekDouble(0))
 
GLOBAL_MAPPING_EXPORT void EvaluateTimeFunction (LibUtilities::SessionReaderSharedPtr pSession, std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, NekDouble pTime=NekDouble(0))
 
virtual GLOBAL_MAPPING_EXPORT void v_InitObject (const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const TiXmlElement *pMapping)
 
virtual GLOBAL_MAPPING_EXPORT void v_ContravarToCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_CovarToCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_ContravarFromCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_CovarFromCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_GetCartesianCoordinates (Array< OneD, NekDouble > &out0, Array< OneD, NekDouble > &out1, Array< OneD, NekDouble > &out2)
 
virtual GLOBAL_MAPPING_EXPORT void v_GetCoordVelocity (Array< OneD, Array< OneD, NekDouble > > &outarray)
 
virtual GLOBAL_MAPPING_EXPORT void v_GetJacobian (Array< OneD, NekDouble > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_DotGradJacobian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray)
 
virtual GLOBAL_MAPPING_EXPORT void v_GetMetricTensor (Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_GetInvMetricTensor (Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_LowerIndex (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 
virtual GLOBAL_MAPPING_EXPORT void v_RaiseIndex (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 
virtual GLOBAL_MAPPING_EXPORT void v_ApplyChristoffelContravar (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_ApplyChristoffelCovar (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)=0
 
virtual GLOBAL_MAPPING_EXPORT void v_Divergence (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray)
 
virtual GLOBAL_MAPPING_EXPORT void v_VelocityLaplacian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble alpha)
 
virtual GLOBAL_MAPPING_EXPORT void v_gradgradU (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 
virtual GLOBAL_MAPPING_EXPORT void v_CurlCurlField (Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const bool generalized)
 
virtual GLOBAL_MAPPING_EXPORT void v_UpdateMapping (const NekDouble time, const Array< OneD, Array< OneD, NekDouble > > &coords=NullNekDoubleArrayOfArray, const Array< OneD, Array< OneD, NekDouble > > &coordsVel=NullNekDoubleArrayOfArray)
 
virtual GLOBAL_MAPPING_EXPORT void v_UpdateGeomInfo ()=0
 
virtual GLOBAL_MAPPING_EXPORT void v_UpdateBCs (const NekDouble time)
 

Friends

class MemoryManager< MappingXYofZ >
 

Additional Inherited Members

- Public Member Functions inherited from Nektar::GlobalMapping::Mapping
virtual GLOBAL_MAPPING_EXPORT ~Mapping ()
 Destructor. More...
 
GLOBAL_MAPPING_EXPORT void InitObject (const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const TiXmlElement *pMapping)
 Initialise the mapping object. More...
 
GLOBAL_MAPPING_EXPORT void ReplaceField (const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
 Replace the Expansion List used by the mapping. More...
 
GLOBAL_MAPPING_EXPORT void Output (LibUtilities::FieldMetaDataMap &fieldMetaDataMap, const std::string &outname)
 Output function called when a chk or fld file is written. More...
 
GLOBAL_MAPPING_EXPORT void ContravarToCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Convert a contravariant vector to the Cartesian system. More...
 
GLOBAL_MAPPING_EXPORT void CovarToCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Convert a covariant vector to the Cartesian system. More...
 
GLOBAL_MAPPING_EXPORT void ContravarFromCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Convert a contravariant vector to the transformed system. More...
 
GLOBAL_MAPPING_EXPORT void CovarFromCartesian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Convert a covariant vector to the transformed system. More...
 
GLOBAL_MAPPING_EXPORT void GetCartesianCoordinates (Array< OneD, NekDouble > &out0, Array< OneD, NekDouble > &out1, Array< OneD, NekDouble > &out2)
 Get the Cartesian coordinates in the field. More...
 
GLOBAL_MAPPING_EXPORT void GetJacobian (Array< OneD, NekDouble > &outarray)
 Get the Jacobian of the transformation. More...
 
GLOBAL_MAPPING_EXPORT void DotGradJacobian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray)
 Calculate the dot product with the gradient of the Jacobian. More...
 
GLOBAL_MAPPING_EXPORT void GetMetricTensor (Array< OneD, Array< OneD, NekDouble > > &outarray)
 Get the metric tensor \(g_{ij}\). More...
 
GLOBAL_MAPPING_EXPORT void GetInvMetricTensor (Array< OneD, Array< OneD, NekDouble > > &outarray)
 Get the inverse of metric tensor \(g^{ij}\). More...
 
GLOBAL_MAPPING_EXPORT void LowerIndex (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Lower index of vector: \(v_{i} = g_{ij}*v^{j}\). More...
 
GLOBAL_MAPPING_EXPORT void RaiseIndex (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Raise index of vector: \(v^{i} = g^{ij}*v_{j}\). More...
 
GLOBAL_MAPPING_EXPORT void ApplyChristoffelContravar (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Apply the Christoffel symbols to a contravariant vector. More...
 
GLOBAL_MAPPING_EXPORT void ApplyChristoffelCovar (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Apply the Christoffel symbols to a covariant vector. More...
 
GLOBAL_MAPPING_EXPORT void GetCoordVelocity (Array< OneD, Array< OneD, NekDouble > > &outarray)
 Obtain the velocity of the coordinates. More...
 
GLOBAL_MAPPING_EXPORT void Divergence (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray)
 Calculate the generalised divergence operator. More...
 
GLOBAL_MAPPING_EXPORT void VelocityLaplacian (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble alpha=0.0)
 Generalised (correction to the) velocity Laplacian operator. More...
 
GLOBAL_MAPPING_EXPORT void gradgradU (const Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray)
 Second order covariant derivatives of a contravariant vector. More...
 
GLOBAL_MAPPING_EXPORT void CurlCurlField (Array< OneD, Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const bool generalized)
 CurlCurl calculated on the whole field. More...
 
GLOBAL_MAPPING_EXPORT bool IsTimeDependent ()
 Get flag defining if mapping is time-dependent. More...
 
GLOBAL_MAPPING_EXPORT void SetTimeDependent (const bool value)
 Set flag defining if mapping is time-dependent. More...
 
GLOBAL_MAPPING_EXPORT bool IsFromFunction ()
 Get flag defining if mapping is defined by a function. More...
 
GLOBAL_MAPPING_EXPORT void SetFromFunction (const bool value)
 Set flag defining if mapping is defined by a function. More...
 
GLOBAL_MAPPING_EXPORT bool HasConstantJacobian ()
 Get flag defining if mapping has constant Jacobian. More...
 
GLOBAL_MAPPING_EXPORT bool IsDefined ()
 Get flag determining if the mapping was defined or is trivial. More...
 
GLOBAL_MAPPING_EXPORT void UpdateBCs (const NekDouble time)
 Update the Dirichlet Boundary Conditions when using Mappings. More...
 
GLOBAL_MAPPING_EXPORT void UpdateMapping (const NekDouble time, const Array< OneD, Array< OneD, NekDouble > > &coords=NullNekDoubleArrayOfArray, const Array< OneD, Array< OneD, NekDouble > > &coordsVel=NullNekDoubleArrayOfArray)
 Update the Mapping with new coordinates. More...
 
GLOBAL_MAPPING_EXPORT void UpdateGeomInfo ()
 Recompute the metric terms of the Mapping. More...
 
- Protected Attributes inherited from Nektar::GlobalMapping::Mapping
LibUtilities::SessionReaderSharedPtr m_session
 Session reader. More...
 
LibUtilities::FieldIOSharedPtr m_fld
 
Array< OneD, MultiRegions::ExpListSharedPtrm_fields
 
Array< OneD, Array< OneD, NekDouble > > m_coords
 Array with the Cartesian coordinates. More...
 
Array< OneD, Array< OneD, NekDouble > > m_coordsVel
 Array with the velocity of the coordinates. More...
 
Array< OneD, Array< OneD, NekDouble > > m_GeometricInfo
 Array with metric terms of the mapping. More...
 
int m_nConvectiveFields
 Number of velocity components. More...
 
std::string m_funcName
 Name of the function containing the coordinates. More...
 
std::string m_velFuncName
 Name of the function containing the velocity of the coordinates. More...
 
bool m_constantJacobian
 Flag defining if the Jacobian is constant. More...
 
bool m_timeDependent
 Flag defining if the Mapping is time-dependent. More...
 
bool m_fromFunction
 Flag defining if the Mapping is defined by a function. More...
 
Array< OneD, Array< OneD, NekDouble > > m_wk1
 
Array< OneD, Array< OneD, NekDouble > > m_wk2
 
Array< OneD, Array< OneD, NekDouble > > m_tmp
 
- Static Protected Attributes inherited from Nektar::GlobalMapping::Mapping
static MappingSharedPtr m_mappingPtr = MappingSharedPtr()
 
static bool m_init = false
 
static bool m_isDefined = false
 

Detailed Description

This class implements a constant-Jacobian mapping defined by

\[ \bar{x} = \bar{x}(x,z) = x + f(z) \]

\[ \bar{y} = \bar{y}(y,z) = y + g(z) \]

\[ \bar{z} = z \]

where \((\bar{x},\bar{y},\bar{z})\) are the Cartesian (physical) coordinates and \((x,y,z)\) are the transformed (computational) coordinates.

Definition at line 48 of file MappingXYofZ.h.

Constructor & Destructor Documentation

◆ MappingXYofZ()

Nektar::GlobalMapping::MappingXYofZ::MappingXYofZ ( const LibUtilities::SessionReaderSharedPtr pSession,
const Array< OneD, MultiRegions::ExpListSharedPtr > &  pFields 
)
protected

Definition at line 55 of file MappingXYofZ.cpp.

58 : Mapping(pSession, pFields)
59{
60}
GLOBAL_MAPPING_EXPORT Mapping(const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
Constructor.
Definition: Mapping.cpp:55

Member Function Documentation

◆ create()

static GLOBAL_MAPPING_EXPORT MappingSharedPtr Nektar::GlobalMapping::MappingXYofZ::create ( const LibUtilities::SessionReaderSharedPtr pSession,
const Array< OneD, MultiRegions::ExpListSharedPtr > &  pFields,
const TiXmlElement *  pMapping 
)
inlinestatic

Creates an instance of this class.

Definition at line 55 of file MappingXYofZ.h.

59 {
62 p->InitObject(pFields, pMapping);
63 return p;
64 }
static std::shared_ptr< DataType > AllocateSharedPtr(const Args &...args)
Allocate a shared pointer from the memory pool.
GLOBAL_MAPPING_EXPORT typedef std::shared_ptr< Mapping > MappingSharedPtr
A shared pointer to a Mapping object.
Definition: Mapping.h:51

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::GlobalMapping::MappingSharedPtr, and CellMLToNektar.cellml_metadata::p.

◆ v_ApplyChristoffelContravar()

void Nektar::GlobalMapping::MappingXYofZ::v_ApplyChristoffelContravar ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray 
)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 242 of file MappingXYofZ.cpp.

245{
246 int physTot = m_fields[0]->GetTotPoints();
247 int nvel = m_nConvectiveFields;
248
249 for (int i = 0; i < nvel; i++)
250 {
251 for (int j = 0; j < nvel; j++)
252 {
253 outarray[i * nvel + j] = Array<OneD, NekDouble>(physTot, 0.0);
254 }
255 }
256
257 // Calculate non-zero terms
258
259 // outarray(0,2) = U3 * fzz
260 Vmath::Vmul(physTot, m_GeometricInfo[1], 1, inarray[2], 1,
261 outarray[0 * nvel + 2], 1);
262
263 // outarray(1,2) = U3 * gzz
264 Vmath::Vmul(physTot, m_GeometricInfo[4], 1, inarray[2], 1,
265 outarray[1 * nvel + 2], 1);
266}
int m_nConvectiveFields
Number of velocity components.
Definition: Mapping.h:412
Array< OneD, Array< OneD, NekDouble > > m_GeometricInfo
Array with metric terms of the mapping.
Definition: Mapping.h:410
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Definition: Mapping.h:404
void Vmul(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Multiply vector z = x*y.
Definition: Vmath.hpp:72

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Nektar::GlobalMapping::Mapping::m_nConvectiveFields, and Vmath::Vmul().

◆ v_ApplyChristoffelCovar()

void Nektar::GlobalMapping::MappingXYofZ::v_ApplyChristoffelCovar ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray 
)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 268 of file MappingXYofZ.cpp.

271{
272 int physTot = m_fields[0]->GetTotPoints();
273 int nvel = m_nConvectiveFields;
274
275 for (int i = 0; i < nvel; i++)
276 {
277 for (int j = 0; j < nvel; j++)
278 {
279 outarray[i * nvel + j] = Array<OneD, NekDouble>(physTot, 0.0);
280 }
281 }
282
283 // Calculate non-zero terms
284
285 // outarray(2,2) = U1 * fzz + U^2 * gzz
286 Vmath::Vmul(physTot, m_GeometricInfo[1], 1, inarray[0], 1,
287 outarray[2 * nvel + 2], 1);
288 Vmath::Vvtvp(physTot, m_GeometricInfo[4], 1, inarray[1], 1,
289 outarray[2 * nvel + 2], 1, outarray[2 * nvel + 2], 1);
290}
void Vvtvp(int n, const T *w, const int incw, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
vvtvp (vector times vector plus vector): z = w*x + y
Definition: Vmath.hpp:366

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Nektar::GlobalMapping::Mapping::m_nConvectiveFields, Vmath::Vmul(), and Vmath::Vvtvp().

◆ v_ContravarFromCartesian()

void Nektar::GlobalMapping::MappingXYofZ::v_ContravarFromCartesian ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray 
)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 115 of file MappingXYofZ.cpp.

118{
119 int physTot = m_fields[0]->GetTotPoints();
120 Array<OneD, NekDouble> wk(physTot, 0.0);
121
122 // U1 = u1 - fz * u3
123 Vmath::Vmul(physTot, m_GeometricInfo[0], 1, inarray[2], 1, wk, 1);
124 Vmath::Vsub(physTot, inarray[0], 1, wk, 1, outarray[0], 1);
125
126 // U2 = u2 - gz*u3
127 Vmath::Vmul(physTot, m_GeometricInfo[3], 1, inarray[2], 1, wk, 1);
128 Vmath::Vsub(physTot, inarray[1], 1, wk, 1, outarray[1], 1);
129
130 // U3 = u3
131 Vmath::Vcopy(physTot, inarray[2], 1, outarray[2], 1);
132}
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.hpp:825
void Vsub(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Subtract vector z = x-y.
Definition: Vmath.hpp:220

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Vmath::Vcopy(), Vmath::Vmul(), and Vmath::Vsub().

◆ v_ContravarToCartesian()

void Nektar::GlobalMapping::MappingXYofZ::v_ContravarToCartesian ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray 
)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 77 of file MappingXYofZ.cpp.

80{
81 int physTot = m_fields[0]->GetTotPoints();
82
83 // U1 = u1 + fz*u3
84 Vmath::Vvtvp(physTot, m_GeometricInfo[0], 1, inarray[2], 1, inarray[0], 1,
85 outarray[0], 1);
86
87 // U2 = u2 + gz*u3
88 Vmath::Vvtvp(physTot, m_GeometricInfo[3], 1, inarray[2], 1, inarray[1], 1,
89 outarray[1], 1);
90
91 // U3 = u3
92 Vmath::Vcopy(physTot, inarray[2], 1, outarray[2], 1);
93}

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Vmath::Vcopy(), and Vmath::Vvtvp().

◆ v_CovarFromCartesian()

void Nektar::GlobalMapping::MappingXYofZ::v_CovarFromCartesian ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray 
)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 134 of file MappingXYofZ.cpp.

137{
138 int physTot = m_fields[0]->GetTotPoints();
139
140 // U1 = u1
141 Vmath::Vcopy(physTot, inarray[0], 1, outarray[0], 1);
142
143 // U2 = u2
144 Vmath::Vcopy(physTot, inarray[1], 1, outarray[1], 1);
145
146 // U3 = u3 + fz*u1 + gz*u2
147 Vmath::Vmul(physTot, m_GeometricInfo[0], 1, inarray[0], 1, outarray[2], 1);
148 Vmath::Vvtvp(physTot, m_GeometricInfo[3], 1, inarray[1], 1, outarray[2], 1,
149 outarray[2], 1);
150 Vmath::Vadd(physTot, inarray[2], 1, outarray[2], 1, outarray[2], 1);
151}
void Vadd(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Add vector z = x+y.
Definition: Vmath.hpp:180

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Vmath::Vadd(), Vmath::Vcopy(), Vmath::Vmul(), and Vmath::Vvtvp().

◆ v_CovarToCartesian()

void Nektar::GlobalMapping::MappingXYofZ::v_CovarToCartesian ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray 
)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 95 of file MappingXYofZ.cpp.

98{
99 int physTot = m_fields[0]->GetTotPoints();
100 Array<OneD, NekDouble> wk(physTot, 0.0);
101
102 // U1 = u1
103 Vmath::Vcopy(physTot, inarray[0], 1, outarray[0], 1);
104
105 // U2 = u2
106 Vmath::Vcopy(physTot, inarray[1], 1, outarray[1], 1);
107
108 // U3 = u3 - fz*u1 - gz*u2
109 Vmath::Vmul(physTot, m_GeometricInfo[0], 1, inarray[0], 1, wk, 1);
110 Vmath::Vsub(physTot, inarray[2], 1, wk, 1, outarray[2], 1);
111 Vmath::Vmul(physTot, m_GeometricInfo[3], 1, inarray[1], 1, wk, 1);
112 Vmath::Vsub(physTot, inarray[2], 1, wk, 1, outarray[2], 1);
113}

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Vmath::Vcopy(), Vmath::Vmul(), and Vmath::Vsub().

◆ v_DotGradJacobian()

void Nektar::GlobalMapping::MappingXYofZ::v_DotGradJacobian ( const Array< OneD, Array< OneD, NekDouble > > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Reimplemented from Nektar::GlobalMapping::Mapping.

Definition at line 159 of file MappingXYofZ.cpp.

162{
163 int physTot = m_fields[0]->GetTotPoints();
164 Vmath::Zero(physTot, outarray, 1);
165}
void Zero(int n, T *x, const int incx)
Zero vector.
Definition: Vmath.hpp:273

References Nektar::GlobalMapping::Mapping::m_fields, and Vmath::Zero().

◆ v_GetInvMetricTensor()

void Nektar::GlobalMapping::MappingXYofZ::v_GetInvMetricTensor ( Array< OneD, Array< OneD, NekDouble > > &  outarray)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 199 of file MappingXYofZ.cpp.

201{
202 int physTot = m_fields[0]->GetTotPoints();
203 int nvel = m_nConvectiveFields;
204 Array<OneD, NekDouble> wk(physTot, 0.0);
205
206 for (int i = 0; i < nvel * nvel; i++)
207 {
208 outarray[i] = Array<OneD, NekDouble>(physTot, 0.0);
209 }
210 // Fill diagonal with 1.0
211 for (int i = 0; i < nvel; i++)
212 {
213 Vmath::Sadd(physTot, 1.0, outarray[i * nvel + i], 1,
214 outarray[i * nvel + i], 1);
215 }
216
217 // G^{11} = 1+fz^2
218 Vmath::Vadd(physTot, outarray[0 * nvel + 0], 1, m_GeometricInfo[2], 1,
219 outarray[0 * nvel + 0], 1);
220
221 // G^{22} = 1+gz^2
222 Vmath::Vadd(physTot, outarray[1 * nvel + 1], 1, m_GeometricInfo[5], 1,
223 outarray[1 * nvel + 1], 1);
224
225 // G^{12} and G^{21} = fz*gz
226 Vmath::Vcopy(physTot, m_GeometricInfo[6], 1, outarray[0 * nvel + 1], 1);
227 Vmath::Vcopy(physTot, outarray[0 * nvel + 1], 1, outarray[1 * nvel + 0], 1);
228
229 // G^{13} and G^{31} = -fz
230 Vmath::Vcopy(physTot, m_GeometricInfo[0], 1, wk, 1); // fz
231 Vmath::Neg(physTot, wk, 1);
232 Vmath::Vcopy(physTot, wk, 1, outarray[0 * nvel + 2], 1);
233 Vmath::Vcopy(physTot, wk, 1, outarray[2 * nvel + 0], 1);
234
235 // G^{23} and G^{32} = -gz
236 Vmath::Vcopy(physTot, m_GeometricInfo[3], 1, wk, 1); // fz
237 Vmath::Neg(physTot, wk, 1);
238 Vmath::Vcopy(physTot, wk, 1, outarray[1 * nvel + 2], 1);
239 Vmath::Vcopy(physTot, wk, 1, outarray[2 * nvel + 1], 1);
240}
void Neg(int n, T *x, const int incx)
Negate x = -x.
Definition: Vmath.hpp:292
void Sadd(int n, const T alpha, const T *x, const int incx, T *y, const int incy)
Add vector y = alpha + x.
Definition: Vmath.hpp:194

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Nektar::GlobalMapping::Mapping::m_nConvectiveFields, Vmath::Neg(), Vmath::Sadd(), Vmath::Vadd(), and Vmath::Vcopy().

◆ v_GetJacobian()

void Nektar::GlobalMapping::MappingXYofZ::v_GetJacobian ( Array< OneD, NekDouble > &  outarray)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 153 of file MappingXYofZ.cpp.

154{
155 int physTot = m_fields[0]->GetTotPoints();
156 Vmath::Fill(physTot, 1.0, outarray, 1);
157}
void Fill(int n, const T alpha, T *x, const int incx)
Fill a vector with a constant value.
Definition: Vmath.hpp:54

References Vmath::Fill(), and Nektar::GlobalMapping::Mapping::m_fields.

◆ v_GetMetricTensor()

void Nektar::GlobalMapping::MappingXYofZ::v_GetMetricTensor ( Array< OneD, Array< OneD, NekDouble > > &  outarray)
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 167 of file MappingXYofZ.cpp.

169{
170 int physTot = m_fields[0]->GetTotPoints();
171 int nvel = m_nConvectiveFields;
172
173 for (int i = 0; i < nvel * nvel; i++)
174 {
175 outarray[i] = Array<OneD, NekDouble>(physTot, 0.0);
176 }
177 // Fill diagonal with 1.0
178 for (int i = 0; i < nvel; i++)
179 {
180 Vmath::Sadd(physTot, 1.0, outarray[i * nvel + i], 1,
181 outarray[i * nvel + i], 1);
182 }
183
184 // G_{13} and G_{31} = fz
185 Vmath::Vcopy(physTot, m_GeometricInfo[0], 1, outarray[0 * nvel + 2], 1);
186 Vmath::Vcopy(physTot, m_GeometricInfo[0], 1, outarray[2 * nvel + 0], 1);
187
188 // G_{23} and G_{32} = gz
189 Vmath::Vcopy(physTot, m_GeometricInfo[3], 1, outarray[1 * nvel + 2], 1);
190 Vmath::Vcopy(physTot, m_GeometricInfo[3], 1, outarray[2 * nvel + 1], 1);
191
192 // G^{33} = (1+fz^2 + gz^2)
193 Vmath::Vadd(physTot, m_GeometricInfo[2], 1, outarray[2 * nvel + 2], 1,
194 outarray[2 * nvel + 2], 1);
195 Vmath::Vadd(physTot, m_GeometricInfo[5], 1, outarray[2 * nvel + 2], 1,
196 outarray[2 * nvel + 2], 1);
197}

References Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, Nektar::GlobalMapping::Mapping::m_nConvectiveFields, Vmath::Sadd(), Vmath::Vadd(), and Vmath::Vcopy().

◆ v_InitObject()

void Nektar::GlobalMapping::MappingXYofZ::v_InitObject ( const Array< OneD, MultiRegions::ExpListSharedPtr > &  pFields,
const TiXmlElement *  pMapping 
)
overrideprotectedvirtual

This function initialises the Mapping object. It computes the coordinates and velocity coordinates, initialises the workspace variables, and calls UpdateGeomInfo, which will perform the calculations specific for each type of Mapping.

Parameters
pFieldsExpList array used in the mapping
pMappingxml element describing the mapping

Reimplemented from Nektar::GlobalMapping::Mapping.

Definition at line 65 of file MappingXYofZ.cpp.

68{
69 Mapping::v_InitObject(pFields, pMapping);
70
71 m_constantJacobian = true;
72
74 "Mapping X = x + f(z), Y = y+g(z) needs 3 velocity components.");
75}
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:208
virtual GLOBAL_MAPPING_EXPORT void v_InitObject(const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const TiXmlElement *pMapping)
Definition: Mapping.cpp:97
bool m_constantJacobian
Flag defining if the Jacobian is constant.
Definition: Mapping.h:421

References ASSERTL0, Nektar::GlobalMapping::Mapping::m_constantJacobian, Nektar::GlobalMapping::Mapping::m_nConvectiveFields, and Nektar::GlobalMapping::Mapping::v_InitObject().

◆ v_UpdateGeomInfo()

void Nektar::GlobalMapping::MappingXYofZ::v_UpdateGeomInfo ( )
overrideprotectedvirtual

Implements Nektar::GlobalMapping::Mapping.

Definition at line 292 of file MappingXYofZ.cpp.

293{
294 int phystot = m_fields[0]->GetTotPoints();
295 // Allocation of geometry memory
296 m_GeometricInfo = Array<OneD, Array<OneD, NekDouble>>(7);
297 for (int i = 0; i < m_GeometricInfo.size(); i++)
298 {
299 m_GeometricInfo[i] = Array<OneD, NekDouble>(phystot, 0.0);
300 }
301
302 bool waveSpace = m_fields[0]->GetWaveSpace();
303 m_fields[0]->SetWaveSpace(false);
304
305 // Calculate derivatives of x transformation --> m_GeometricInfo 0-1
307 m_GeometricInfo[0]);
309 m_GeometricInfo[1]);
310 // m_GeometricInfo[2] = fz^2
311 Vmath::Vmul(phystot, m_GeometricInfo[0], 1, m_GeometricInfo[0], 1,
312 m_GeometricInfo[2], 1);
313
314 // Calculate derivatives of transformation -> m_GeometricInfo 3-4
316 m_GeometricInfo[3]);
318 m_GeometricInfo[4]);
319 // m_GeometricInfo[5] = gz^2
320 Vmath::Vmul(phystot, m_GeometricInfo[3], 1, m_GeometricInfo[3], 1,
321 m_GeometricInfo[5], 1);
322
323 // m_GeometricInfo[6] = gz*fz
324 Vmath::Vmul(phystot, m_GeometricInfo[0], 1, m_GeometricInfo[3], 1,
325 m_GeometricInfo[6], 1);
326
327 m_fields[0]->SetWaveSpace(waveSpace);
328}
Array< OneD, Array< OneD, NekDouble > > m_coords
Array with the Cartesian coordinates.
Definition: Mapping.h:406
MultiRegions::Direction const DirCartesianMap[]
Definition: ExpList.h:87

References Nektar::MultiRegions::DirCartesianMap, Nektar::GlobalMapping::Mapping::m_coords, Nektar::GlobalMapping::Mapping::m_fields, Nektar::GlobalMapping::Mapping::m_GeometricInfo, and Vmath::Vmul().

Friends And Related Function Documentation

◆ MemoryManager< MappingXYofZ >

friend class MemoryManager< MappingXYofZ >
friend

Definition at line 1 of file MappingXYofZ.h.

Member Data Documentation

◆ className

std::string Nektar::GlobalMapping::MappingXYofZ::className
static
Initial value:
=
"X = x + f(z), Y = y +g(z)")
static GLOBAL_MAPPING_EXPORT MappingSharedPtr create(const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const TiXmlElement *pMapping)
Creates an instance of this class.
Definition: MappingXYofZ.h:55
tKey RegisterCreatorFunction(tKey idKey, CreatorFunction classCreator, std::string pDesc="")
Register a class with the factory.
MappingFactory & GetMappingFactory()
Declaration of the mapping factory singleton.
Definition: Mapping.cpp:49

Name of the class.

Definition at line 67 of file MappingXYofZ.h.