PIC

Nektar++: Spectral/hp Element Framework

Department of Aeronautics, Imperial College London, UK
Scientific Computing and Imaging Institute, University of Utah, USA

November 25, 2017

Users Guide - Version 4.4.1

Introduction
I  Getting Started
Installation
 1.1 Installing Debian/Ubuntu Packages
 1.2 Installing Redhat/Fedora Packages
 1.3 Installing from Source
 1.4 Compiling Documentation
 1.5 Compiling Tutorials
Mathematical Formulation
 2.1 Background
 2.2 Methods overview
XML Session File
 3.1 Geometry
 3.2 Expansions
 3.3 Conditions
 3.4 Filters
 3.5 Forcing
 3.6 Analytic Expressions
II  Preprocessing & Postprocessing
NekMesh
 4.1 Exporting a mesh from Gmsh
 4.2 Defining physical surfaces and volumes
 4.3 Converting the MSH to Nektar++ format
 4.4 NekMesh modules
 4.5 Mesh generation
FieldConvert
 5.1 Convert .fld / .chk files into Paraview, VisIt or Tecplot format
 5.2 Convert field files between XML and HDF5 format
 5.3 Range option -r
 5.4 FieldConvert modules -m
 5.5 FieldConvert in parallel
 5.6 Processing large files in serial
III  Solver Applications
Advection-Diffusion-Reaction Solver
 6.1 Synopsis
 6.2 Usage
 6.3 Session file configuration
 6.4 Examples
Acoustic Perturbation Equations Solver
 7.1 Synopsis
 7.2 Usage
 7.3 Session file configuration
 7.4 Examples
Cardiac Electrophysiology Solver
 8.1 Synopsis
 8.2 Usage
 8.3 Session file configuration
Compressible Flow Solver
 9.1 Synopsis
 9.2 Usage
 9.3 Session file configuration
 9.4 Examples
Incompressible Navier-Stokes Solver
 10.1 Synopsis
 10.2 Usage
 10.3 Session file configuration
 10.4 Stability analysis Session file configuration
 10.5 Steady-state solver Session file configuration
 10.6 Coordinate transformations Session file configuration
 10.7 Adaptive polynomial order Session file configuration
 10.8 Advecting extra passive scalar fields
 10.9 Examples
Linear elasticity solver
 11.1 Synopsis
 11.2 Usage
 11.3 Session file configuration
 11.4 Examples
Pulse Wave Solver
 12.1 Synopsis
 12.2 Usage
 12.3 Session file configuration
 12.4 Examples
 12.5 Further Information
 12.6 Future Development
Shallow Water Solver
 13.1 Synopsis
 13.2 Usage
 13.3 Session file configuration
 13.4 Examples
IV  Reference
Optimisation
 14.1 Operator evaluation strategies
 14.2 Collections
Command-line Options
Frequently Asked Questions
 16.1 Compilation and Testing
 16.2 Usage
Bibliography
Bibliography

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