Nektar++
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Abstraction of a one-dimensional multi-elemental expansion which is merely a collection of local expansions. More...
#include <ExpList3DHomogeneous2D.h>
Public Member Functions | |
ExpList3DHomogeneous2D () | |
Default constructor. More... | |
ExpList3DHomogeneous2D (const LibUtilities::SessionReaderSharedPtr &pSession, const LibUtilities::BasisKey &HomoBasis_y, const LibUtilities::BasisKey &HomoBasis_z, const NekDouble lhom_y, const NekDouble lhom_z, const bool useFFT, const bool dealiasing, const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
ExpList3DHomogeneous2D (const LibUtilities::SessionReaderSharedPtr &pSession, const LibUtilities::BasisKey &HomoBasis_y, const LibUtilities::BasisKey &HomoBasis_z, const NekDouble lhom_y, const NekDouble lhom_z, const bool useFFT, const bool dealiasing, const SpatialDomains::MeshGraphSharedPtr &graph1D, const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Sets up a list of local expansions based on an input mesh. More... | |
ExpList3DHomogeneous2D (const ExpList3DHomogeneous2D &In, const bool DeclareLinesSetCoeffPhys=true) | |
Copy constructor. More... | |
ExpList3DHomogeneous2D (const ExpList3DHomogeneous2D &In, const std::vector< unsigned int > &eIDs, const bool DeclareLinesSetCoeffPhys=true, const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
~ExpList3DHomogeneous2D () override | |
Destructor. More... | |
Public Member Functions inherited from Nektar::MultiRegions::ExpListHomogeneous2D | |
ExpListHomogeneous2D (const ExpansionType type) | |
Default constructor. More... | |
ExpListHomogeneous2D (const ExpansionType type, const LibUtilities::SessionReaderSharedPtr &pSession, const LibUtilities::BasisKey &HomoBasis_y, const LibUtilities::BasisKey &HomoBasis_z, const NekDouble ly, const NekDouble lz, const bool useFFT, const bool dealiasing) | |
ExpListHomogeneous2D (const ExpListHomogeneous2D &In) | |
Copy constructor. More... | |
ExpListHomogeneous2D (const ExpListHomogeneous2D &In, const std::vector< unsigned int > &eIDs) | |
~ExpListHomogeneous2D () override | |
Destructor. More... | |
void | Homogeneous2DTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool IsForwards, bool Shuff=true, bool UnShuff=true) |
void | SetPaddingBase (void) |
void | PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) |
void | PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
Public Member Functions inherited from Nektar::MultiRegions::ExpList | |
ExpList (const ExpansionType Type=eNoType) | |
The default constructor using a type. More... | |
ExpList (const ExpList &in, const bool DeclareCoeffPhysArrays=true) | |
The copy constructor. More... | |
ExpList (const ExpList &in, const std::vector< unsigned int > &eIDs, const bool DeclareCoeffPhysArrays=true, const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Constructor copying only elements defined in eIds. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &graph, const bool DeclareCoeffPhysArrays=true, const std::string &var="DefaultVar", const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Generate an ExpList from a meshgraph graph and session file. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::ExpansionInfoMap &expansions, const bool DeclareCoeffPhysArrays=true, const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Sets up a list of local expansions based on an expansion Map. More... | |
ExpList (const SpatialDomains::PointGeomSharedPtr &geom) | |
Specialised constructors for 0D Expansions Wrapper around LocalRegion::PointExp - used in PrePacing.cpp. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const Array< OneD, const ExpListSharedPtr > &bndConstraint, const Array< OneD, const SpatialDomains ::BoundaryConditionShPtr > &bndCond, const LocalRegions::ExpansionVector &locexp, const SpatialDomains::MeshGraphSharedPtr &graph, const LibUtilities::CommSharedPtr &comm, const bool DeclareCoeffPhysArrays=true, const std::string variable="DefaultVar", const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Generate expansions for the trace space expansions used in DisContField. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const LocalRegions::ExpansionVector &locexp, const SpatialDomains::MeshGraphSharedPtr &graph, const bool DeclareCoeffPhysArrays, const std::string variable, const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Generate an trace ExpList from a meshgraph graph and session file. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::CompositeMap &domain, const SpatialDomains::MeshGraphSharedPtr &graph, const bool DeclareCoeffPhysArrays=true, const std::string variable="DefaultVar", bool SetToOneSpaceDimension=false, const LibUtilities::CommSharedPtr comm=LibUtilities::CommSharedPtr(), const Collections::ImplementationType ImpType=Collections::eNoImpType) | |
Constructor based on domain information only for 1D & 2D boundary conditions. More... | |
virtual | ~ExpList () |
The default destructor. More... | |
int | GetNcoeffs (void) const |
Returns the total number of local degrees of freedom \(N_{\mathrm{eof}}=\sum_{e=1}^{{N_{\mathrm{el}}}}N^{e}_m\). More... | |
int | GetNcoeffs (const int eid) const |
Returns the total number of local degrees of freedom for element eid. More... | |
ExpansionType | GetExpType (void) |
Returns the type of the expansion. More... | |
void | SetExpType (ExpansionType Type) |
Returns the type of the expansion. More... | |
int | EvalBasisNumModesMax (void) const |
Evaulates the maximum number of modes in the elemental basis order over all elements. More... | |
const Array< OneD, int > | EvalBasisNumModesMaxPerExp (void) const |
Returns the vector of the number of modes in the elemental basis order over all elements. More... | |
int | GetTotPoints (void) const |
Returns the total number of quadrature points m_npoints \(=Q_{\mathrm{tot}}\). More... | |
int | GetTotPoints (const int eid) const |
Returns the total number of quadrature points for eid's element \(=Q_{\mathrm{tot}}\). More... | |
int | GetNpoints (void) const |
Returns the total number of quadrature points m_npoints \(=Q_{\mathrm{tot}}\). More... | |
int | Get1DScaledTotPoints (const NekDouble scale) const |
Returns the total number of qudature points scaled by the factor scale on each 1D direction. More... | |
void | SetWaveSpace (const bool wavespace) |
Sets the wave space to the one of the possible configuration true or false. More... | |
void | SetModifiedBasis (const bool modbasis) |
Set Modified Basis for the stability analysis. More... | |
bool | GetWaveSpace (void) const |
This function returns the third direction expansion condition, which can be in wave space (coefficient) or not It is stored in the variable m_WaveSpace. More... | |
void | SetPhys (int i, NekDouble val) |
Set the i th value of m_phys to value val. More... | |
void | SetPhys (const Array< OneD, const NekDouble > &inarray) |
Fills the array m_phys. More... | |
void | SetPhysArray (Array< OneD, NekDouble > &inarray) |
Sets the array m_phys. More... | |
void | SetPhysState (const bool physState) |
This function manually sets whether the array of physical values \(\boldsymbol{u}_l\) (implemented as m_phys) is filled or not. More... | |
bool | GetPhysState (void) const |
This function indicates whether the array of physical values \(\boldsymbol{u}_l\) (implemented as m_phys) is filled or not. More... | |
void | MultiplyByQuadratureMetric (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
multiply the metric jacobi and quadrature weights More... | |
void | DivideByQuadratureMetric (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
Divided by the metric jacobi and quadrature weights. More... | |
void | IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the inner product of a function \(f(\boldsymbol{x})\) with respect to all local expansion modes \(\phi_n^e(\boldsymbol{x})\). More... | |
void | IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the inner product of a function \(f(\boldsymbol{x})\) with respect to the derivative (in direction. More... | |
void | IProductWRTDirectionalDerivBase (const Array< OneD, const NekDouble > &direction, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
Directional derivative along a given direction. More... | |
void | IProductWRTDerivBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the inner product of a function \(f(\boldsymbol{x})\) with respect to the derivative of all local expansion modes \(\phi_n^e(\boldsymbol{x})\). More... | |
void | FwdTransLocalElmt (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function elementally evaluates the forward transformation of a function \(u(\boldsymbol{x})\) onto the global spectral/hp expansion. More... | |
void | FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | ExponentialFilter (Array< OneD, NekDouble > &array, const NekDouble alpha, const NekDouble exponent, const NekDouble cutoff) |
void | MultiplyByElmtInvMass (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function elementally mulplies the coefficient space of Sin my the elemental inverse of the mass matrix. More... | |
void | MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | MultiplyByMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | SmoothField (Array< OneD, NekDouble > &field) |
Smooth a field across elements. More... | |
GlobalLinSysKey | HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff=StdRegions::NullVarCoeffMap, const MultiRegions::VarFactorsMap &varfactors=MultiRegions::NullVarFactorsMap, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray, const bool PhysSpaceForcing=true) |
Solve helmholtz problem. More... | |
GlobalLinSysKey | LinearAdvectionDiffusionReactionSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff=StdRegions::NullVarCoeffMap, const MultiRegions::VarFactorsMap &varfactors=MultiRegions::NullVarFactorsMap, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray, const bool PhysSpaceForcing=true) |
Solve Advection Diffusion Reaction. More... | |
void | LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray) |
Solve Advection Diffusion Reaction. More... | |
void | FwdTransBndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function elementally evaluates the backward transformation of the global spectral/hp element expansion. More... | |
void | GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1=NullNekDouble1DArray, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray) |
This function calculates the coordinates of all the elemental quadrature points \(\boldsymbol{x}_i\). More... | |
void | GetCoords (const int eid, Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1=NullNekDouble1DArray, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray) |
void | HomogeneousFwdTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool Shuff=true, bool UnShuff=true) |
void | HomogeneousBwdTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool Shuff=true, bool UnShuff=true) |
void | DealiasedProd (const int num_dofs, const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray) |
void | DealiasedDotProd (const int num_dofs, const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray) |
void | GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID) |
void | NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID) |
void | NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray) |
void | ApplyGeomInfo () |
Apply geometry information to each expansion. More... | |
void | Reset () |
Reset geometry information and reset matrices. More... | |
void | WriteTecplotHeader (std::ostream &outfile, std::string var="") |
void | WriteTecplotZone (std::ostream &outfile, int expansion=-1) |
void | WriteTecplotField (std::ostream &outfile, int expansion=-1) |
void | WriteTecplotConnectivity (std::ostream &outfile, int expansion=-1) |
void | WriteVtkHeader (std::ostream &outfile) |
void | WriteVtkFooter (std::ostream &outfile) |
void | WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip=0) |
void | WriteVtkPieceFooter (std::ostream &outfile, int expansion) |
void | WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var="v") |
int | GetCoordim (int eid) |
This function returns the dimension of the coordinates of the element eid. More... | |
void | SetCoeff (int i, NekDouble val) |
Set the i th coefficiient in m_coeffs to value val. More... | |
void | SetCoeffs (int i, NekDouble val) |
Set the i th coefficiient in m_coeffs to value val. More... | |
void | SetCoeffsArray (Array< OneD, NekDouble > &inarray) |
Set the m_coeffs array to inarray. More... | |
int | GetShapeDimension () |
This function returns the dimension of the shape of the element eid. More... | |
const Array< OneD, const NekDouble > & | GetCoeffs () const |
This function returns (a reference to) the array \(\boldsymbol{\hat{u}}_l\) (implemented as m_coeffs) containing all local expansion coefficients. More... | |
void | ImposeDirichletConditions (Array< OneD, NekDouble > &outarray) |
Impose Dirichlet Boundary Conditions onto Array. More... | |
void | FillBndCondFromField (const Array< OneD, NekDouble > coeffs) |
Fill Bnd Condition expansion from the values stored in expansion. More... | |
void | FillBndCondFromField (const int nreg, const Array< OneD, NekDouble > coeffs) |
Fill Bnd Condition expansion in nreg from the values stored in expansion. More... | |
void | LocalToGlobal (bool useComm=true) |
Gathers the global coefficients \(\boldsymbol{\hat{u}}_g\) from the local coefficients \(\boldsymbol{\hat{u}}_l\). More... | |
void | LocalToGlobal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool useComm=true) |
void | GlobalToLocal (void) |
Scatters from the global coefficients \(\boldsymbol{\hat{u}}_g\) to the local coefficients \(\boldsymbol{\hat{u}}_l\). More... | |
void | GlobalToLocal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
NekDouble | GetCoeff (int i) |
Get the i th value (coefficient) of m_coeffs. More... | |
NekDouble | GetCoeffs (int i) |
Get the i th value (coefficient) of m_coeffs. More... | |
const Array< OneD, const NekDouble > & | GetPhys () const |
This function returns (a reference to) the array \(\boldsymbol{u}_l\) (implemented as m_phys) containing the function \(u^{\delta}(\boldsymbol{x})\) evaluated at the quadrature points. More... | |
NekDouble | Linf (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
This function calculates the \(L_\infty\) error of the global spectral/hp element approximation. More... | |
NekDouble | L2 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
This function calculates the \(L_\infty\) error of the global This function calculates the \(L_2\) error with respect to soln of the global spectral/hp element approximation. More... | |
NekDouble | H1 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
Calculates the \(H^1\) error of the global spectral/hp element approximation. More... | |
NekDouble | Integral () |
Calculates the \(H^1\) error of the global spectral/hp element approximation. More... | |
NekDouble | Integral (const Array< OneD, const NekDouble > &inarray) |
NekDouble | VectorFlux (const Array< OneD, Array< OneD, NekDouble > > &inarray) |
Array< OneD, const NekDouble > | HomogeneousEnergy (void) |
This function calculates the energy associated with each one of the modesof a 3D homogeneous nD expansion. More... | |
void | SetHomo1DSpecVanVisc (Array< OneD, NekDouble > visc) |
This function sets the Spectral Vanishing Viscosity in homogeneous1D expansion. More... | |
Array< OneD, const unsigned int > | GetZIDs (void) |
This function returns a vector containing the wave numbers in z-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More... | |
LibUtilities::TranspositionSharedPtr | GetTransposition (void) |
This function returns the transposition class associated with the homogeneous expansion. More... | |
NekDouble | GetHomoLen (void) |
This function returns the Width of homogeneous direction associated with the homogeneous expansion. More... | |
void | SetHomoLen (const NekDouble lhom) |
This function sets the Width of homogeneous direction associated with the homogeneous expansion. More... | |
Array< OneD, const unsigned int > | GetYIDs (void) |
This function returns a vector containing the wave numbers in y-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More... | |
void | PhysInterp1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function interpolates the physical space points in inarray to outarray using the same points defined in the expansion but where the number of points are rescaled by 1DScale. More... | |
void | PhysGalerkinProjection1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function Galerkin projects the physical space points in inarray to outarray where inarray is assumed to be defined in the expansion but where the number of points are rescaled by 1DScale. More... | |
int | GetExpSize (void) |
This function returns the number of elements in the expansion. More... | |
size_t | GetNumElmts (void) |
This function returns the number of elements in the expansion which may be different for a homogeoenous extended expansionp. More... | |
const std::shared_ptr< LocalRegions::ExpansionVector > | GetExp () const |
This function returns the vector of elements in the expansion. More... | |
LocalRegions::ExpansionSharedPtr & | GetExp (int n) const |
This function returns (a shared pointer to) the local elemental expansion of the \(n^{\mathrm{th}}\) element. More... | |
LocalRegions::ExpansionSharedPtr & | GetExpFromGeomId (int n) |
This function returns (a shared pointer to) the local elemental expansion of the \(n^{\mathrm{th}}\) element given a global geometry ID. More... | |
LocalRegions::ExpansionSharedPtr & | GetExp (const Array< OneD, const NekDouble > &gloCoord) |
This function returns (a shared pointer to) the local elemental expansion containing the arbitrary point given by gloCoord. More... | |
int | GetExpIndex (const Array< OneD, const NekDouble > &gloCoord, NekDouble tol=0.0, bool returnNearestElmt=false, int cachedId=-1, NekDouble maxDistance=1e6) |
This function returns the index of the local elemental expansion containing the arbitrary point given by gloCoord, within a distance tolerance of tol. More... | |
int | GetExpIndex (const Array< OneD, const NekDouble > &gloCoords, Array< OneD, NekDouble > &locCoords, NekDouble tol=0.0, bool returnNearestElmt=false, int cachedId=-1, NekDouble maxDistance=1e6) |
NekDouble | PhysEvaluate (const Array< OneD, const NekDouble > &coords, const Array< OneD, const NekDouble > &phys) |
int | GetCoeff_Offset (int n) const |
Get the start offset position for a local contiguous list of coeffs correspoinding to element n. More... | |
int | GetPhys_Offset (int n) const |
Get the start offset position for a local contiguous list of quadrature points in a full array correspoinding to element n. More... | |
Array< OneD, NekDouble > & | UpdateCoeffs () |
This function returns (a reference to) the array \(\boldsymbol{\hat{u}}_l\) (implemented as m_coeffs) containing all local expansion coefficients. More... | |
Array< OneD, NekDouble > & | UpdatePhys () |
This function returns (a reference to) the array \(\boldsymbol{u}_l\) (implemented as m_phys) containing the function \(u^{\delta}(\boldsymbol{x})\) evaluated at the quadrature points. More... | |
void | PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
void | PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray) |
This function discretely evaluates the derivative of a function \(f(\boldsymbol{x})\) on the domain consisting of all elements of the expansion. More... | |
void | PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
void | Curl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q) |
void | CurlCurl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q) |
void | PhysDirectionalDeriv (const Array< OneD, const NekDouble > &direction, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | GetMovingFrames (const SpatialDomains::GeomMMF MMFdir, const Array< OneD, const NekDouble > &CircCentre, Array< OneD, Array< OneD, NekDouble > > &outarray) |
const Array< OneD, const std::shared_ptr< ExpList > > & | GetBndCondExpansions () |
const Array< OneD, const NekDouble > & | GetBndCondBwdWeight () |
Get the weight value for boundary conditions. More... | |
void | SetBndCondBwdWeight (const int index, const NekDouble value) |
Set the weight value for boundary conditions. More... | |
std::shared_ptr< ExpList > & | UpdateBndCondExpansion (int i) |
void | Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
void | Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
std::shared_ptr< ExpList > & | GetTrace () |
std::shared_ptr< AssemblyMapDG > & | GetTraceMap (void) |
const Array< OneD, const int > & | GetTraceBndMap (void) |
void | GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals) |
void | GetElmtNormalLength (Array< OneD, NekDouble > &lengthsFwd, Array< OneD, NekDouble > &lengthsBwd) |
Get the length of elements in boundary normal direction. More... | |
void | GetBwdWeight (Array< OneD, NekDouble > &weightAver, Array< OneD, NekDouble > &weightJump) |
Get the weight value for boundary conditions for boundary average and jump calculations. More... | |
void | AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray) |
void | AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray) |
void | GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
void | GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd, bool FillBnd=true, bool PutFwdInBwdOnBCs=false, bool DoExchange=true) |
void | FillBwdWithBoundCond (const Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd, bool PutFwdInBwdOnBCs=false) |
void | AddTraceQuadPhysToField (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &field) |
Add Fwd and Bwd value to field, a reverse procedure of GetFwdBwdTracePhys. More... | |
void | AddTraceQuadPhysToOffDiag (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &field) |
void | GetLocTraceFromTracePts (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &locTraceFwd, Array< OneD, NekDouble > &locTraceBwd) |
void | FillBwdWithBwdWeight (Array< OneD, NekDouble > &weightave, Array< OneD, NekDouble > &weightjmp) |
Fill Bwd with boundary conditions. More... | |
void | PeriodicBwdCopy (const Array< OneD, const NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
Copy and fill the Periodic boundaries. More... | |
const std::vector< bool > & | GetLeftAdjacentFaces (void) const |
void | ExtractTracePhys (Array< OneD, NekDouble > &outarray) |
void | ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
const Array< OneD, const SpatialDomains::BoundaryConditionShPtr > & | GetBndConditions () |
Array< OneD, SpatialDomains::BoundaryConditionShPtr > & | UpdateBndConditions () |
void | EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble=NekConstants::kNekUnsetDouble, const NekDouble=NekConstants::kNekUnsetDouble) |
void | GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the result of the multiplication of a matrix of type specified by mkey with a vector given by inarray. More... | |
void | SetUpPhysNormals () |
void | GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID) |
virtual void | GetBndElmtExpansion (int i, std::shared_ptr< ExpList > &result, const bool DeclareCoeffPhysArrays=true) |
void | ExtractElmtToBndPhys (int i, const Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary) |
void | ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt) |
void | ExtractPhysToBnd (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bnd) |
void | GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals) |
void | GeneralGetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef, int NumHomoDir=0, Array< OneD, LibUtilities::BasisSharedPtr > &HomoBasis=LibUtilities::NullBasisSharedPtr1DArray, std::vector< NekDouble > &HomoLen=LibUtilities::NullNekDoubleVector, bool homoStrips=false, std::vector< unsigned int > &HomoSIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoZIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoYIDs=LibUtilities::NullUnsignedIntVector) |
std::map< int, RobinBCInfoSharedPtr > | GetRobinBCInfo () |
void | GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces=NullPeriodicMap) |
std::vector< LibUtilities::FieldDefinitionsSharedPtr > | GetFieldDefinitions () |
void | GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef) |
void | AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata) |
Append the element data listed in elements fielddef->m_ElementIDs onto fielddata. More... | |
void | AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs) |
Append the data in coeffs listed in elements fielddef->m_ElementIDs onto fielddata. More... | |
void | ExtractElmtDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs) |
Extract the data in fielddata into the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More... | |
void | ExtractCoeffsToCoeffs (const std::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs) |
Extract the data from fromField using fromExpList the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More... | |
void | ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs, std::unordered_map< int, int > zIdToPlane=std::unordered_map< int, int >()) |
Extract the data in fielddata into the coeffs. More... | |
void | ExtractCoeffsFromFile (const std::string &fileName, LibUtilities::CommSharedPtr comm, const std::string &varName, Array< OneD, NekDouble > &coeffs) |
void | GenerateElementVector (const int ElementID, const NekDouble scalar1, const NekDouble scalar2, Array< OneD, NekDouble > &outarray) |
Generate vector v such that v[i] = scalar1 if i is in the element < ElementID. Otherwise, v[i] = scalar2. More... | |
std::shared_ptr< ExpList > | GetSharedThisPtr () |
Returns a shared pointer to the current object. More... | |
std::shared_ptr< LibUtilities::SessionReader > | GetSession () const |
Returns the session object. More... | |
std::shared_ptr< LibUtilities::Comm > | GetComm () const |
Returns the comm object. More... | |
SpatialDomains::MeshGraphSharedPtr | GetGraph () |
LibUtilities::BasisSharedPtr | GetHomogeneousBasis (void) |
std::shared_ptr< ExpList > & | GetPlane (int n) |
void | CreateCollections (Collections::ImplementationType ImpType=Collections::eNoImpType) |
Construct collections of elements containing a single element type and polynomial order from the list of expansions. More... | |
void | ClearGlobalLinSysManager (void) |
int | GetPoolCount (std::string) |
void | UnsetGlobalLinSys (GlobalLinSysKey, bool) |
LibUtilities::NekManager< GlobalLinSysKey, GlobalLinSys > & | GetGlobalLinSysManager (void) |
const Array< OneD, const std::pair< int, int > > & | GetCoeffsToElmt () const |
Get m_coeffs to elemental value map. More... | |
void | AddTraceJacToElmtJac (const Array< OneD, const DNekMatSharedPtr > &FwdMat, const Array< OneD, const DNekMatSharedPtr > &BwdMat, Array< OneD, DNekMatSharedPtr > &fieldMat) |
inverse process of v_GetFwdBwdTracePhys. Given Trace integration of Fwd and Bwd Jacobian, with dimension NtotalTrace*TraceCoef*TracePhys. return Elemental Jacobian matrix with dimension NtotalElement*ElementCoef*ElementPhys. More... | |
void | GetMatIpwrtDeriveBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, const int nDirctn, Array< OneD, DNekMatSharedPtr > &mtxPerVar) |
void | GetMatIpwrtDeriveBase (const TensorOfArray3D< NekDouble > &inarray, Array< OneD, DNekMatSharedPtr > &mtxPerVar) |
void | GetDiagMatIpwrtBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, DNekMatSharedPtr > &mtxPerVar) |
void | AddTraceIntegralToOffDiag (const Array< OneD, const NekDouble > &FwdFlux, const Array< OneD, const NekDouble > &BwdFlux, Array< OneD, NekDouble > &outarray) |
void | AddRightIPTPhysDerivBase (const int dir, const Array< OneD, const DNekMatSharedPtr > ElmtJacQuad, Array< OneD, DNekMatSharedPtr > ElmtJacCoef) |
void | AddRightIPTBaseMatrix (const Array< OneD, const DNekMatSharedPtr > ElmtJacQuad, Array< OneD, DNekMatSharedPtr > ElmtJacCoef) |
const LocTraceToTraceMapSharedPtr & | GetLocTraceToTraceMap () const |
std::vector< bool > & | GetLeftAdjacentTraces (void) |
const std::unordered_map< int, int > & | GetElmtToExpId (void) |
This function returns the map of index inside m_exp to geom id. More... | |
int | GetElmtToExpId (int elmtId) |
This function returns the index inside m_exp for a given geom id. More... | |
Protected Member Functions | |
void | SetCoeffPhys (void) |
Definition of the total number of degrees of freedom and quadrature points. Sets up the storage for m_coeff and m_phys. More... | |
void | v_GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1, Array< OneD, NekDouble > &coord_2) override |
void | v_GetCoords (const int eid, Array< OneD, NekDouble > &xc0, Array< OneD, NekDouble > &xc1, Array< OneD, NekDouble > &xc2) final |
void | v_WriteTecplotZone (std::ostream &outfile, int expansion) override |
void | v_WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip) override |
NekDouble | v_L2 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) override |
Protected Member Functions inherited from Nektar::MultiRegions::ExpListHomogeneous2D | |
DNekBlkMatSharedPtr | GenHomogeneous2DBlockMatrix (Homogeneous2DMatType mattype) const |
DNekBlkMatSharedPtr | GetHomogeneous2DBlockMatrix (Homogeneous2DMatType mattype) const |
size_t | v_GetNumElmts (void) override |
void | v_FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override |
void | v_FwdTransLocalElmt (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override |
void | v_FwdTransBndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override |
void | v_BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override |
void | v_IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override |
std::vector< LibUtilities::FieldDefinitionsSharedPtr > | v_GetFieldDefinitions (void) override |
void | v_GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef) override |
void | v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata) override |
void | v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs) override |
void | v_ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs, std::unordered_map< int, int > zIdToPlane) override |
Extract data from raw field data into expansion list. More... | |
void | v_WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var) override |
void | v_HomogeneousFwdTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool Shuff=true, bool UnShuff=true) override |
void | v_HomogeneousBwdTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool Shuff=true, bool UnShuff=true) override |
void | v_DealiasedProd (const int num_dofs, const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray) override |
void | v_DealiasedDotProd (const int num_dofs, const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray) override |
void | v_PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) override |
void | v_PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) override |
Protected Member Functions inherited from Nektar::MultiRegions::ExpList | |
std::shared_ptr< DNekMat > | GenGlobalMatrixFull (const GlobalLinSysKey &mkey, const std::shared_ptr< AssemblyMapCG > &locToGloMap) |
const DNekScalBlkMatSharedPtr | GenBlockMatrix (const GlobalMatrixKey &gkey) |
This function assembles the block diagonal matrix of local matrices of the type mtype. More... | |
const DNekScalBlkMatSharedPtr & | GetBlockMatrix (const GlobalMatrixKey &gkey) |
void | MultiplyByBlockMatrix (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
std::shared_ptr< GlobalMatrix > | GenGlobalMatrix (const GlobalMatrixKey &mkey, const std::shared_ptr< AssemblyMapCG > &locToGloMap) |
Generates a global matrix from the given key and map. More... | |
void | GlobalEigenSystem (const std::shared_ptr< DNekMat > &Gmat, Array< OneD, NekDouble > &EigValsReal, Array< OneD, NekDouble > &EigValsImag, Array< OneD, NekDouble > &EigVecs=NullNekDouble1DArray) |
std::shared_ptr< GlobalLinSys > | GenGlobalLinSys (const GlobalLinSysKey &mkey, const std::shared_ptr< AssemblyMapCG > &locToGloMap) |
This operation constructs the global linear system of type mkey. More... | |
std::shared_ptr< GlobalLinSys > | GenGlobalBndLinSys (const GlobalLinSysKey &mkey, const AssemblyMapSharedPtr &locToGloMap) |
Generate a GlobalLinSys from information provided by the key "mkey" and the mapping provided in LocToGloBaseMap. More... | |
virtual size_t | v_GetNumElmts (void) |
virtual const Array< OneD, const std::shared_ptr< ExpList > > & | v_GetBndCondExpansions (void) |
virtual const Array< OneD, const NekDouble > & | v_GetBndCondBwdWeight () |
virtual void | v_SetBndCondBwdWeight (const int index, const NekDouble value) |
virtual std::shared_ptr< ExpList > & | v_UpdateBndCondExpansion (int i) |
virtual void | v_Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
virtual void | v_Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
virtual std::shared_ptr< ExpList > & | v_GetTrace () |
virtual std::shared_ptr< AssemblyMapDG > & | v_GetTraceMap () |
virtual const Array< OneD, const int > & | v_GetTraceBndMap () |
virtual const std::shared_ptr< LocTraceToTraceMap > & | v_GetLocTraceToTraceMap (void) const |
virtual std::vector< bool > & | v_GetLeftAdjacentTraces (void) |
virtual void | v_GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals) |
Populate normals with the normals of all expansions. More... | |
virtual void | v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray) |
virtual void | v_AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray) |
virtual void | v_GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
virtual void | v_GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd, bool FillBnd=true, bool PutFwdInBwdOnBCs=false, bool DoExchange=true) |
virtual void | v_FillBwdWithBoundCond (const Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd, bool PutFwdInBwdOnBCs) |
virtual void | v_AddTraceQuadPhysToField (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &field) |
virtual void | v_AddTraceQuadPhysToOffDiag (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &field) |
virtual void | v_GetLocTraceFromTracePts (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &locTraceFwd, Array< OneD, NekDouble > &locTraceBwd) |
virtual void | v_FillBwdWithBwdWeight (Array< OneD, NekDouble > &weightave, Array< OneD, NekDouble > &weightjmp) |
virtual void | v_PeriodicBwdCopy (const Array< OneD, const NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
virtual const std::vector< bool > & | v_GetLeftAdjacentFaces (void) const |
virtual void | v_ExtractTracePhys (Array< OneD, NekDouble > &outarray) |
virtual void | v_ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual GlobalLinSysKey | v_HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff, const MultiRegions::VarFactorsMap &varfactors, const Array< OneD, const NekDouble > &dirForcing, const bool PhysSpaceForcing) |
virtual GlobalLinSysKey | v_LinearAdvectionDiffusionReactionSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff, const MultiRegions::VarFactorsMap &varfactors, const Array< OneD, const NekDouble > &dirForcing, const bool PhysSpaceForcing) |
virtual void | v_LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray) |
virtual void | v_ImposeDirichletConditions (Array< OneD, NekDouble > &outarray) |
virtual void | v_FillBndCondFromField (const Array< OneD, NekDouble > coeffs) |
virtual void | v_FillBndCondFromField (const int nreg, const Array< OneD, NekDouble > coeffs) |
virtual void | v_Reset () |
Reset geometry information, metrics, matrix managers and geometry information. More... | |
virtual void | v_LocalToGlobal (bool UseComm) |
virtual void | v_LocalToGlobal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool UseComm) |
virtual void | v_GlobalToLocal (void) |
virtual void | v_GlobalToLocal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_FwdTransLocalElmt (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_FwdTransBndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_SmoothField (Array< OneD, NekDouble > &field) |
virtual void | v_IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_IProductWRTDerivBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1=NullNekDouble1DArray, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray) |
virtual void | v_GetCoords (const int eid, Array< OneD, NekDouble > &xc0, Array< OneD, NekDouble > &xc1, Array< OneD, NekDouble > &xc2) |
virtual void | v_PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) |
virtual void | v_PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
virtual void | v_PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
virtual void | v_Curl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q) |
virtual void | v_CurlCurl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q) |
virtual void | v_PhysDirectionalDeriv (const Array< OneD, const NekDouble > &direction, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_GetMovingFrames (const SpatialDomains::GeomMMF MMFdir, const Array< OneD, const NekDouble > &CircCentre, Array< OneD, Array< OneD, NekDouble > > &outarray) |
virtual void | v_HomogeneousFwdTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool Shuff=true, bool UnShuff=true) |
virtual void | v_HomogeneousBwdTrans (const int npts, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool Shuff=true, bool UnShuff=true) |
virtual void | v_DealiasedProd (const int num_dofs, const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray) |
virtual void | v_DealiasedDotProd (const int num_dofs, const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray) |
virtual void | v_GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID) |
virtual void | v_NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID) |
virtual void | v_NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray) |
virtual void | v_SetUpPhysNormals () |
: Set up a normal along the trace elements between two elements at elemental level More... | |
virtual void | v_GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID) |
virtual void | v_GetBndElmtExpansion (int i, std::shared_ptr< ExpList > &result, const bool DeclareCoeffPhysArrays) |
virtual void | v_ExtractElmtToBndPhys (const int i, const Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary) |
virtual void | v_ExtractPhysToBndElmt (const int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt) |
virtual void | v_ExtractPhysToBnd (const int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bnd) |
virtual void | v_GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals) |
virtual std::vector< LibUtilities::FieldDefinitionsSharedPtr > | v_GetFieldDefinitions (void) |
virtual void | v_GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef) |
virtual void | v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata) |
virtual void | v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs) |
virtual void | v_ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs, std::unordered_map< int, int > zIdToPlane) |
Extract data from raw field data into expansion list. More... | |
virtual void | v_ExtractCoeffsToCoeffs (const std::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs) |
virtual void | v_WriteTecplotHeader (std::ostream &outfile, std::string var="") |
virtual void | v_WriteTecplotZone (std::ostream &outfile, int expansion) |
virtual void | v_WriteTecplotField (std::ostream &outfile, int expansion) |
virtual void | v_WriteTecplotConnectivity (std::ostream &outfile, int expansion) |
virtual void | v_WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var) |
virtual void | v_WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip) |
virtual NekDouble | v_L2 (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
virtual NekDouble | v_Integral (const Array< OneD, const NekDouble > &inarray) |
virtual NekDouble | v_VectorFlux (const Array< OneD, Array< OneD, NekDouble > > &inarray) |
virtual Array< OneD, const NekDouble > | v_HomogeneousEnergy (void) |
virtual LibUtilities::TranspositionSharedPtr | v_GetTransposition (void) |
virtual NekDouble | v_GetHomoLen (void) |
virtual void | v_SetHomoLen (const NekDouble lhom) |
virtual Array< OneD, const unsigned int > | v_GetZIDs (void) |
virtual Array< OneD, const unsigned int > | v_GetYIDs (void) |
virtual void | v_PhysInterp1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_PhysGalerkinProjection1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_ClearGlobalLinSysManager (void) |
virtual int | v_GetPoolCount (std::string) |
virtual void | v_UnsetGlobalLinSys (GlobalLinSysKey, bool) |
virtual LibUtilities::NekManager< GlobalLinSysKey, GlobalLinSys > & | v_GetGlobalLinSysManager (void) |
void | ExtractFileBCs (const std::string &fileName, LibUtilities::CommSharedPtr comm, const std::string &varName, const std::shared_ptr< ExpList > locExpList) |
virtual const Array< OneD, const SpatialDomains::BoundaryConditionShPtr > & | v_GetBndConditions () |
virtual Array< OneD, SpatialDomains::BoundaryConditionShPtr > & | v_UpdateBndConditions () |
virtual void | v_EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble x2_in=NekConstants::kNekUnsetDouble, const NekDouble x3_in=NekConstants::kNekUnsetDouble) |
virtual std::map< int, RobinBCInfoSharedPtr > | v_GetRobinBCInfo (void) |
virtual void | v_GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces) |
virtual LibUtilities::BasisSharedPtr | v_GetHomogeneousBasis (void) |
virtual void | v_SetHomo1DSpecVanVisc (Array< OneD, NekDouble > visc) |
virtual std::shared_ptr< ExpList > & | v_GetPlane (int n) |
virtual void | v_AddTraceIntegralToOffDiag (const Array< OneD, const NekDouble > &FwdFlux, const Array< OneD, const NekDouble > &BwdFlux, Array< OneD, NekDouble > &outarray) |
Additional Inherited Members | |
Public Attributes inherited from Nektar::MultiRegions::ExpListHomogeneous2D | |
bool | m_useFFT |
FFT variables. More... | |
LibUtilities::NektarFFTSharedPtr | m_FFT_y |
LibUtilities::NektarFFTSharedPtr | m_FFT_z |
Array< OneD, NekDouble > | m_tmpIN |
Array< OneD, NekDouble > | m_tmpOUT |
LibUtilities::TranspositionSharedPtr | m_transposition |
LibUtilities::CommSharedPtr | m_Ycomm |
LibUtilities::CommSharedPtr | m_Zcomm |
Static Protected Member Functions inherited from Nektar::MultiRegions::ExpList | |
static SpatialDomains::BoundaryConditionShPtr | GetBoundaryCondition (const SpatialDomains::BoundaryConditionCollection &collection, unsigned int index, const std::string &variable) |
Protected Attributes inherited from Nektar::MultiRegions::ExpListHomogeneous2D | |
LibUtilities::BasisSharedPtr | m_homogeneousBasis_y |
Definition of the total number of degrees of freedom and quadrature points. Sets up the storage for m_coeff and m_phys. More... | |
LibUtilities::BasisSharedPtr | m_homogeneousBasis_z |
Base expansion in z direction. More... | |
LibUtilities::BasisSharedPtr | m_paddingBasis_y |
Base expansion in y direction. More... | |
LibUtilities::BasisSharedPtr | m_paddingBasis_z |
Base expansion in z direction. More... | |
NekDouble | m_lhom_y |
Width of homogeneous direction y. More... | |
NekDouble | m_lhom_z |
Width of homogeneous direction z. More... | |
Homo2DBlockMatrixMapShPtr | m_homogeneous2DBlockMat |
Array< OneD, ExpListSharedPtr > | m_lines |
Vector of ExpList, will be filled with ExpList1D. More... | |
int | m_ny |
Number of modes = number of poitns in y direction. More... | |
int | m_nz |
Number of modes = number of poitns in z direction. More... | |
Protected Attributes inherited from Nektar::MultiRegions::ExpList | |
ExpansionType | m_expType |
Exapnsion type. More... | |
LibUtilities::CommSharedPtr | m_comm |
Communicator. More... | |
LibUtilities::SessionReaderSharedPtr | m_session |
Session. More... | |
SpatialDomains::MeshGraphSharedPtr | m_graph |
Mesh associated with this expansion list. More... | |
int | m_ncoeffs |
The total number of local degrees of freedom. m_ncoeffs \(=N_{\mathrm{eof}}=\sum_{e=1}^{{N_{\mathrm{el}}}}N^{e}_l\). More... | |
int | m_npoints |
Array< OneD, NekDouble > | m_coeffs |
Concatenation of all local expansion coefficients. More... | |
Array< OneD, NekDouble > | m_phys |
The global expansion evaluated at the quadrature points. More... | |
bool | m_physState |
The state of the array m_phys. More... | |
std::shared_ptr< LocalRegions::ExpansionVector > | m_exp |
The list of local expansions. More... | |
Collections::CollectionVector | m_collections |
std::vector< bool > | m_collectionsDoInit |
Vector of bools to act as an initialise on first call flag. More... | |
std::vector< int > | m_coll_coeff_offset |
Offset of elemental data into the array m_coeffs. More... | |
std::vector< int > | m_coll_phys_offset |
Offset of elemental data into the array m_phys. More... | |
Array< OneD, int > | m_coeff_offset |
Offset of elemental data into the array m_coeffs. More... | |
Array< OneD, int > | m_phys_offset |
Offset of elemental data into the array m_phys. More... | |
Array< OneD, std::pair< int, int > > | m_coeffsToElmt |
m_coeffs to elemental value map More... | |
BlockMatrixMapShPtr | m_blockMat |
bool | m_WaveSpace |
std::unordered_map< int, int > | m_elmtToExpId |
Mapping from geometry ID of element to index inside m_exp. More... | |
Abstraction of a one-dimensional multi-elemental expansion which is merely a collection of local expansions.
Definition at line 57 of file ExpList3DHomogeneous2D.h.
Nektar::MultiRegions::ExpList3DHomogeneous2D::ExpList3DHomogeneous2D | ( | ) |
Default constructor.
Definition at line 44 of file ExpList3DHomogeneous2D.cpp.
Nektar::MultiRegions::ExpList3DHomogeneous2D::ExpList3DHomogeneous2D | ( | const LibUtilities::SessionReaderSharedPtr & | pSession, |
const LibUtilities::BasisKey & | HomoBasis_y, | ||
const LibUtilities::BasisKey & | HomoBasis_z, | ||
const NekDouble | lhom_y, | ||
const NekDouble | lhom_z, | ||
const bool | useFFT, | ||
const bool | dealiasing, | ||
const Collections::ImplementationType | ImpType = Collections::eNoImpType |
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) |
Definition at line 48 of file ExpList3DHomogeneous2D.cpp.
Nektar::MultiRegions::ExpList3DHomogeneous2D::ExpList3DHomogeneous2D | ( | const LibUtilities::SessionReaderSharedPtr & | pSession, |
const LibUtilities::BasisKey & | HomoBasis_y, | ||
const LibUtilities::BasisKey & | HomoBasis_z, | ||
const NekDouble | lhom_y, | ||
const NekDouble | lhom_z, | ||
const bool | useFFT, | ||
const bool | dealiasing, | ||
const SpatialDomains::MeshGraphSharedPtr & | graph1D, | ||
const Collections::ImplementationType | ImpType = Collections::eNoImpType |
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Sets up a list of local expansions based on an input mesh.
Definition at line 60 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::MultiRegions::ExpList::GetExp(), Nektar::MultiRegions::ExpList::m_exp, Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_z, Nektar::MultiRegions::ExpListHomogeneous2D::m_lines, Nektar::MultiRegions::ExpList::m_session, and SetCoeffPhys().
Nektar::MultiRegions::ExpList3DHomogeneous2D::ExpList3DHomogeneous2D | ( | const ExpList3DHomogeneous2D & | In, |
const bool | DeclareLinesSetCoeffPhys = true |
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Copy constructor.
In | ExpList3DHomogeneous2D object to copy. |
Definition at line 105 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::MultiRegions::ExpListHomogeneous2D::m_lines, and SetCoeffPhys().
Nektar::MultiRegions::ExpList3DHomogeneous2D::ExpList3DHomogeneous2D | ( | const ExpList3DHomogeneous2D & | In, |
const std::vector< unsigned int > & | eIDs, | ||
const bool | DeclareLinesSetCoeffPhys = true , |
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const Collections::ImplementationType | ImpType = Collections::eNoImpType |
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) |
Definition at line 127 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::MultiRegions::ExpListHomogeneous2D::m_lines, and SetCoeffPhys().
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override |
Definition of the total number of degrees of freedom and quadrature points. Sets up the storage for m_coeff and m_phys.
Definition at line 167 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MultiRegions::ExpList::m_coeff_offset, Nektar::MultiRegions::ExpList::m_coeffs, Nektar::MultiRegions::ExpListHomogeneous2D::m_lines, Nektar::MultiRegions::ExpList::m_ncoeffs, Nektar::MultiRegions::ExpList::m_npoints, Nektar::MultiRegions::ExpList::m_phys, and Nektar::MultiRegions::ExpList::m_phys_offset.
Referenced by Nektar::MultiRegions::ContField3DHomogeneous2D::ContField3DHomogeneous2D(), Nektar::MultiRegions::DisContField3DHomogeneous2D::DisContField3DHomogeneous2D(), and ExpList3DHomogeneous2D().
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overrideprotectedvirtual |
The operation calls the 2D plane coordinates through the function ExpList::GetCoords and then evaluated the third coordinate using the member m_lhom
coord_0 | After calculation, the \(x_1\) coordinate will be stored in this array. |
coord_1 | After calculation, the \(x_2\) coordinate will be stored in this array. |
coord_2 | After calculation, the \(x_3\) coordinate will be stored in this array. This coordinate is evaluated using the predefined value m_lhom |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 269 of file ExpList3DHomogeneous2D.cpp.
References Vmath::Fill(), Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_z, Nektar::MultiRegions::ExpListHomogeneous2D::m_lhom_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_lhom_z, Nektar::MultiRegions::ExpListHomogeneous2D::m_lines, Vmath::Sadd(), Vmath::Smul(), and Nektar::UnitTests::z().
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finalprotectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 202 of file ExpList3DHomogeneous2D.cpp.
References Vmath::Fill(), Nektar::MultiRegions::ExpList::GetTotPoints(), Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_z, Nektar::MultiRegions::ExpListHomogeneous2D::m_lhom_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_lhom_z, Vmath::Sadd(), Vmath::Smul(), and Nektar::UnitTests::z().
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overrideprotectedvirtual |
Given a spectral/hp approximation \(u^{\delta}(\boldsymbol{x})\) evaluated at the quadrature points (which should be contained in m_phys), this function calculates the \(L_2\) error of this approximation with respect to an exact solution. The local distribution of the quadrature points allows an elemental evaluation of this operation through the functions StdRegions::StdExpansion::L2.
The exact solution, also evaluated at the quadrature points, should be contained in the variable m_phys of the ExpList object Sol.
Sol | An ExpList, containing the discrete evaluation of the exact solution at the quadrature points in its array m_phys. |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 431 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MultiRegions::ExpList::GetTotPoints(), Nektar::MultiRegions::ExpList::L2(), Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_z, Nektar::MultiRegions::ExpListHomogeneous2D::m_lhom_y, Nektar::MultiRegions::ExpListHomogeneous2D::m_lhom_z, Nektar::MultiRegions::ExpListHomogeneous2D::m_lines, and tinysimd::sqrt().
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overrideprotectedvirtual |
Write Tecplot Files Zone
outfile | Output file name. |
expansion | Expansion that is considered |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 324 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MultiRegions::ExpList::GetCoords(), Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_y, and Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_z.
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overrideprotectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 354 of file ExpList3DHomogeneous2D.cpp.
References Nektar::MultiRegions::ExpList::GetCoords(), Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_y, and Nektar::MultiRegions::ExpListHomogeneous2D::m_homogeneousBasis_z.