#include <TenTusscher06.h>
Inheritance diagram for Nektar::TenTusscher06:
Public Member Functions | |
| TenTusscher06 (const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField) | |
| Constructor. More... | |
| ~TenTusscher06 () override | |
| Desctructor. More... | |
 Public Member Functions inherited from Nektar::CellModel | |
| CellModel (const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField) | |
| virtual | ~CellModel () |
| void | Initialise () |
| Initialise the cell model storage and set initial conditions. More... | |
| void | TimeIntegrate (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time) |
| Time integrate the cell model by one PDE timestep. More... | |
| void | Update (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time) |
| Compute the derivatives of cell model variables. More... | |
| void | GenerateSummary (SummaryList &s) |
| Print a summary of the cell model. More... | |
| size_t | GetNumCellVariables () |
| std::string | GetCellVarName (size_t idx) |
| Array< OneD, NekDouble > | GetCellSolutionCoeffs (size_t idx) |
| Array< OneD, NekDouble > | GetCellSolution (size_t idx) |
Static Public Member Functions | |
| static CellModelSharedPtr | create (const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField) |
| Creates an instance of this class. More... | |
Static Public Attributes | |
| static std::string | className |
| Name of class. More... | |
Protected Types | |
| enum | Variants { eEpicardium , eEndocardium , eMid , eIschemia } |
Protected Member Functions | |
| void | v_Update (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time) override |
| void | v_GenerateSummary (SummaryList &s) override |
| Prints a summary of the model parameters. More... | |
| void | v_SetInitialConditions () override |
| Protected Member Functions inherited from Nektar::CellModel | |
| virtual void | v_Update (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)=0 |
| virtual void | v_GenerateSummary (SummaryList &s)=0 |
| virtual std::string | v_GetCellVarName (size_t idx) |
| virtual void | v_SetInitialConditions ()=0 |
| void | LoadCellModel () |
Protected Attributes | |
| NekDouble | g_to |
| NekDouble | g_Ks |
| NekDouble | s_inf_factor |
| NekDouble | s_tau_f1 |
| NekDouble | s_tau_f2 |
| NekDouble | s_tau_f3 |
| NekDouble | s_tau_f4 |
| NekDouble | s_tau_f5 |
| NekDouble | k_0 |
| enum Variants | model_variant |
| Protected Attributes inherited from Nektar::CellModel | |
| LibUtilities::SessionReaderSharedPtr | m_session |
| Session. More... | |
| MultiRegions::ExpListSharedPtr | m_field |
| Transmembrane potential field from PDE system. More... | |
| size_t | m_nq |
| Number of physical points. More... | |
| size_t | m_nvar |
| Number of variables in cell model (inc. transmembrane voltage) More... | |
| NekDouble | m_lastTime |
| Timestep for pde model. More... | |
| size_t | m_substeps |
| Number of substeps to take. More... | |
| Array< OneD, Array< OneD, NekDouble > > | m_cellSol |
| Cell model solution variables. More... | |
| Array< OneD, Array< OneD, NekDouble > > | m_wsp |
| Cell model integration workspace. More... | |
| bool | m_useNodal |
| Flag indicating whether nodal projection in use. More... | |
| StdRegions::StdNodalTriExpSharedPtr | m_nodalTri |
| StdNodalTri for cell model calculations. More... | |
| StdRegions::StdNodalTetExpSharedPtr | m_nodalTet |
| Array< OneD, Array< OneD, NekDouble > > | m_nodalTmp |
| Temporary array for nodal projection. More... | |
| std::vector< int > | m_concentrations |
| Indices of cell model variables which are concentrations. More... | |
| std::vector< int > | m_gates |
| Indices of cell model variables which are gates. More... | |
| Array< OneD, Array< OneD, NekDouble > > | m_gates_tau |
| Storage for gate tau values. More... | |
Static Protected Attributes | |
| static std::string | lookupIds [] |
| static std::string | def |
Detailed Description
Definition at line 42 of file TenTusscher06.h.
Member Enumeration Documentation
◆ Variants
|
protected |
| Enumerator | |
|---|---|
| eEpicardium | |
| eEndocardium | |
| eMid | |
| eIschemia | |
Definition at line 87 of file TenTusscher06.h.
Constructor & Destructor Documentation
◆ TenTusscher06()
| Nektar::TenTusscher06::TenTusscher06 | ( | const LibUtilities::SessionReaderSharedPtr & | pSession, |
| const MultiRegions::ExpListSharedPtr & | pField | ||
| ) |
Constructor.
Definition at line 64 of file TenTusscher06.cpp.
67 : CellModel(pSession, pField)
68{
70 "CellModelVariant");
71
73 {
75 g_to = 0.294;
76 g_Ks = 0.392;
77 s_inf_factor = 20.0;
78 s_tau_f1 = 85.0;
79 s_tau_f2 = 45.0;
80 s_tau_f3 = 320.0;
81 s_tau_f4 = 0.0;
82 s_tau_f5 = 1.0;
83 k_0 = 5.4;
84 break;
86 g_to = 0.073;
87 g_Ks = 0.392;
88 s_inf_factor = 28.0;
89 s_tau_f1 = 1000.0;
90 s_tau_f2 = 67.0;
91 s_tau_f3 = 1000.0;
92 s_tau_f4 = 8.0;
93 s_tau_f5 = 0.0;
94 k_0 = 5.4;
95 break;
97 g_to = 0.294;
98 g_Ks = 0.098;
99 s_inf_factor = 20.0;
100 s_tau_f1 = 85.0;
101 s_tau_f2 = 45.0;
102 s_tau_f3 = 320.0;
103 s_tau_f4 = 0.0;
104 s_tau_f5 = 1.0;
105 k_0 = 5.4;
106 break;
108 g_to = 0.294;
109 g_Ks = 0.392;
110 s_inf_factor = 20.0;
111 s_tau_f1 = 85.0;
112 s_tau_f2 = 45.0;
113 s_tau_f3 = 320.0;
114 s_tau_f4 = 0.0;
115 s_tau_f5 = 1.0;
116 k_0 = 9.0;
117 break;
118 }
119 m_nvar = 19;
120
121 m_gates.push_back(1);
122 m_gates.push_back(2);
123 m_gates.push_back(3);
124 m_gates.push_back(4);
125 m_gates.push_back(5);
126 m_gates.push_back(6);
127 m_gates.push_back(7);
128 m_gates.push_back(8);
129 m_gates.push_back(9);
130 m_gates.push_back(10);
131 m_gates.push_back(11);
132 m_gates.push_back(12);
133 m_concentrations.push_back(13);
134 m_concentrations.push_back(14);
135 m_concentrations.push_back(15);
136 m_concentrations.push_back(16);
137 m_concentrations.push_back(17);
138 m_concentrations.push_back(18);
139}
std::vector< int > m_concentrations
Indices of cell model variables which are concentrations.
Definition: CellModel.h:139
std::vector< int > m_gates
Indices of cell model variables which are gates.
Definition: CellModel.h:141
size_t m_nvar
Number of variables in cell model (inc. transmembrane voltage)
Definition: CellModel.h:119
CellModel(const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField)
Definition: CellModel.cpp:66
References eEndocardium, eEpicardium, eIschemia, eMid, g_Ks, g_to, k_0, Nektar::CellModel::m_concentrations, Nektar::CellModel::m_gates, Nektar::CellModel::m_nvar, model_variant, s_inf_factor, s_tau_f1, s_tau_f2, s_tau_f3, s_tau_f4, and s_tau_f5.
◆ ~TenTusscher06()
|
inlineoverride |
Member Function Documentation
◆ create()
|
inlinestatic |
Creates an instance of this class.
Definition at line 47 of file TenTusscher06.h.
50 {
52 pField);
53 }
static std::shared_ptr< DataType > AllocateSharedPtr(const Args &...args)
Allocate a shared pointer from the memory pool.
Definition: NekMemoryManager.hpp:166
References Nektar::MemoryManager< DataType >::AllocateSharedPtr().
◆ v_GenerateSummary()
|
overrideprotectedvirtual |
Prints a summary of the model parameters.
Implements Nektar::CellModel.
Definition at line 1078 of file TenTusscher06.cpp.
1079{
1081}
void AddSummaryItem(SummaryList &l, const std::string &name, const std::string &value)
Adds a summary item to the summary info list.
Definition: Misc.cpp:47
References Nektar::SolverUtils::AddSummaryItem().
◆ v_SetInitialConditions()
|
overrideprotectedvirtual |
Implements Nektar::CellModel.
Definition at line 1086 of file TenTusscher06.cpp.
1087{
1088 // Values taken from CellML website
1090 {
1111 break;
1132 break;
1153 break;
1174 break;
1175 }
1176}
Array< OneD, Array< OneD, NekDouble > > m_cellSol
Cell model solution variables.
Definition: CellModel.h:126
void Fill(int n, const T alpha, T *x, const int incx)
Fill a vector with a constant value.
Definition: Vmath.hpp:54
References eEndocardium, eEpicardium, eIschemia, eMid, Vmath::Fill(), Nektar::CellModel::m_cellSol, Nektar::CellModel::m_nq, and model_variant.
◆ v_Update()
|
overrideprotectedvirtual |
Implements Nektar::CellModel.
Definition at line 144 of file TenTusscher06.cpp.
148{
150 {
151 // Inputs:
152 // Time units: millisecond
153 NekDouble var_chaste_interface__membrane__V = inarray[0][i];
154 // Units: millivolt; Initial value: -85.23
155 NekDouble
156 var_chaste_interface__rapid_time_dependent_potassium_current_Xr1_gate__Xr1 =
157 inarray[1][i];
158 // Units: dimensionless; Initial value: 0.00621
159 NekDouble
160 var_chaste_interface__rapid_time_dependent_potassium_current_Xr2_gate__Xr2 =
161 inarray[2][i];
162 // Units: dimensionless; Initial value: 0.4712
163 NekDouble
164 var_chaste_interface__slow_time_dependent_potassium_current_Xs_gate__Xs =
165 inarray[3][i];
166 // Units: dimensionless; Initial value: 0.0095
167 NekDouble var_chaste_interface__fast_sodium_current_m_gate__m =
168 inarray[4][i];
169 // Units: dimensionless; Initial value: 0.00172
170 NekDouble var_chaste_interface__fast_sodium_current_h_gate__h =
171 inarray[5][i];
172 // Units: dimensionless; Initial value: 0.7444
173 NekDouble var_chaste_interface__fast_sodium_current_j_gate__j =
174 inarray[6][i];
175 // Units: dimensionless; Initial value: 0.7045
176 NekDouble var_chaste_interface__L_type_Ca_current_d_gate__d =
177 inarray[7][i];
178 // Units: dimensionless; Initial value: 3.373e-5
179 NekDouble var_chaste_interface__L_type_Ca_current_f_gate__f =
180 inarray[8][i];
181 // Units: dimensionless; Initial value: 0.7888
182 NekDouble var_chaste_interface__L_type_Ca_current_f2_gate__f2 =
183 inarray[9][i];
184 // Units: dimensionless; Initial value: 0.9755
185 NekDouble var_chaste_interface__L_type_Ca_current_fCass_gate__fCass =
186 inarray[10][i];
187 // Units: dimensionless; Initial value: 0.9953
188 NekDouble var_chaste_interface__transient_outward_current_s_gate__s =
189 inarray[11][i];
190 // Units: dimensionless; Initial value: 0.999998
191 NekDouble var_chaste_interface__transient_outward_current_r_gate__r =
192 inarray[12][i];
193 // Units: dimensionless; Initial value: 2.42e-8
194 NekDouble var_chaste_interface__calcium_dynamics__Ca_i = inarray[13][i];
195 // Units: millimolar; Initial value: 0.000126
196 NekDouble var_chaste_interface__calcium_dynamics__Ca_SR =
197 inarray[14][i];
198 // Units: millimolar; Initial value: 3.64
199 NekDouble var_chaste_interface__calcium_dynamics__Ca_ss =
200 inarray[15][i];
201 // Units: millimolar; Initial value: 0.00036
202 NekDouble var_chaste_interface__calcium_dynamics__R_prime =
203 inarray[16][i];
204 // Units: dimensionless; Initial value: 0.9073
205 NekDouble var_chaste_interface__sodium_dynamics__Na_i = inarray[17][i];
206 // Units: millimolar; Initial value: 8.604
207 NekDouble var_chaste_interface__potassium_dynamics__K_i =
208 inarray[18][i];
209 // Units: millimolar; Initial value: 136.89
210
211 // Mathematics
212 NekDouble d_dt_chaste_interface__membrane__V;
219 var_chaste_interface__membrane__V; // millivolt
221 var_chaste_interface__potassium_dynamics__K_i; // millimolar
223 var_membrane__R; // joule_per_mole_kelvin
226 var_membrane__F; // coulomb_per_millimole
229 var_potassium_dynamics__K_o; // millimolar
231 ((var_reversal_potentials__R * var_reversal_potentials__T) /
232 var_reversal_potentials__F) *
233 log(var_reversal_potentials__K_o /
234 var_reversal_potentials__K_i); // millivolt
236 var_reversal_potentials__E_K; // millivolt
238 ((3.0 *
239 exp(0.0002 * ((var_inward_rectifier_potassium_current__V -
240 var_inward_rectifier_potassium_current__E_K) +
241 100.0))) +
242 exp(0.1 * ((var_inward_rectifier_potassium_current__V -
243 var_inward_rectifier_potassium_current__E_K) -
244 10.0))) /
245 (1.0 +
246 exp((-0.5) *
247 (var_inward_rectifier_potassium_current__V -
248 var_inward_rectifier_potassium_current__E_K))); // dimensionless
250 0.1 /
251 (1.0 + exp(0.06 * ((var_inward_rectifier_potassium_current__V -
252 var_inward_rectifier_potassium_current__E_K) -
253 200.0))); // dimensionless
255 var_inward_rectifier_potassium_current__alpha_K1 /
256 (var_inward_rectifier_potassium_current__alpha_K1 +
257 var_inward_rectifier_potassium_current__beta_K1); // dimensionless
259 var_potassium_dynamics__K_o; // millimolar
261 5.405; // nanoS_per_picoF
263 var_inward_rectifier_potassium_current__g_K1 *
264 var_inward_rectifier_potassium_current__xK1_inf *
265 sqrt(var_inward_rectifier_potassium_current__K_o / 5.4) *
266 (var_inward_rectifier_potassium_current__V -
267 var_inward_rectifier_potassium_current__E_K); // picoA_per_picoF
269 var_chaste_interface__transient_outward_current_s_gate__s; // dimensionless
271 var_chaste_interface__transient_outward_current_r_gate__r; // dimensionless
275 var_chaste_interface__membrane__V; // millivolt
277 var_reversal_potentials__E_K; // millivolt
279 var_transient_outward_current__g_to *
280 var_transient_outward_current__r *
281 var_transient_outward_current__s *
282 (var_transient_outward_current__V -
283 var_transient_outward_current__E_K); // picoA_per_picoF
285 var_chaste_interface__rapid_time_dependent_potassium_current_Xr1_gate__Xr1; // dimensionless
287 var_chaste_interface__rapid_time_dependent_potassium_current_Xr2_gate__Xr2; // dimensionless
289 var_chaste_interface__membrane__V; // millivolt
291 var_potassium_dynamics__K_o; // millimolar
293 var_reversal_potentials__E_K; // millivolt
295 0.153; // nanoS_per_picoF
297 var_rapid_time_dependent_potassium_current__g_Kr *
298 sqrt(var_rapid_time_dependent_potassium_current__K_o / 5.4) *
299 var_rapid_time_dependent_potassium_current__Xr1 *
300 var_rapid_time_dependent_potassium_current__Xr2 *
301 (var_rapid_time_dependent_potassium_current__V -
302 var_rapid_time_dependent_potassium_current__E_K); // picoA_per_picoF
307 var_sodium_dynamics__Na_o; // millimolar
309 var_chaste_interface__sodium_dynamics__Na_i; // millimolar
312 ((var_reversal_potentials__R * var_reversal_potentials__T) /
313 var_reversal_potentials__F) *
314 log((var_reversal_potentials__K_o +
315 (var_reversal_potentials__P_kna *
316 var_reversal_potentials__Na_o)) /
317 (var_reversal_potentials__K_i +
318 (var_reversal_potentials__P_kna *
319 var_reversal_potentials__Na_i))); // millivolt
321 var_reversal_potentials__E_Ks; // millivolt
323 var_chaste_interface__membrane__V; // millivolt
325 var_chaste_interface__slow_time_dependent_potassium_current_Xs_gate__Xs; // dimensionless
327 var_slow_time_dependent_potassium_current__g_Ks *
328 pow(var_slow_time_dependent_potassium_current__Xs, 2.0) *
329 (var_slow_time_dependent_potassium_current__V -
330 var_slow_time_dependent_potassium_current__E_Ks); // picoA_per_picoF
332 var_chaste_interface__calcium_dynamics__Ca_ss; // millimolar
334 3.98e-05; // litre_per_farad_second
336 var_chaste_interface__L_type_Ca_current_f_gate__f; // dimensionless
338 var_chaste_interface__L_type_Ca_current_d_gate__d; // dimensionless
340 var_membrane__F; // coulomb_per_millimole
342 var_chaste_interface__L_type_Ca_current_f2_gate__f2; // dimensionless
344 var_chaste_interface__L_type_Ca_current_fCass_gate__fCass; // dimensionless
346 var_chaste_interface__membrane__V; // millivolt
350 var_calcium_dynamics__Ca_o; // millimolar
352 var_membrane__R; // joule_per_mole_kelvin
354 (((var_L_type_Ca_current__g_CaL * var_L_type_Ca_current__d *
355 var_L_type_Ca_current__f * var_L_type_Ca_current__f2 *
356 var_L_type_Ca_current__fCass * 4.0 *
357 (var_L_type_Ca_current__V - 15.0) *
358 pow(var_L_type_Ca_current__F, 2.0)) /
359 (var_L_type_Ca_current__R * var_L_type_Ca_current__T)) *
360 ((0.25 * var_L_type_Ca_current__Ca_ss *
361 exp((2.0 * (var_L_type_Ca_current__V - 15.0) *
362 var_L_type_Ca_current__F) /
363 (var_L_type_Ca_current__R * var_L_type_Ca_current__T))) -
364 var_L_type_Ca_current__Ca_o)) /
365 (exp((2.0 * (var_L_type_Ca_current__V - 15.0) *
366 var_L_type_Ca_current__F) /
367 (var_L_type_Ca_current__R * var_L_type_Ca_current__T)) -
368 1.0); // picoA_per_picoF
370 var_chaste_interface__sodium_dynamics__Na_i; // millimolar
372 var_membrane__R; // joule_per_mole_kelvin
374 var_membrane__T; // kelvin
376 var_chaste_interface__membrane__V; // millivolt
378 1.0; // millimolar
380 2.724; // picoA_per_picoF
382 40.0; // millimolar
384 var_membrane__F; // coulomb_per_millimole
386 var_potassium_dynamics__K_o; // millimolar
388 ((((var_sodium_potassium_pump_current__P_NaK *
389 var_sodium_potassium_pump_current__K_o) /
390 (var_sodium_potassium_pump_current__K_o +
391 var_sodium_potassium_pump_current__K_mk)) *
392 var_sodium_potassium_pump_current__Na_i) /
393 (var_sodium_potassium_pump_current__Na_i +
394 var_sodium_potassium_pump_current__K_mNa)) /
395 (1.0 +
396 (0.1245 * exp(((-0.1) * var_sodium_potassium_pump_current__V *
397 var_sodium_potassium_pump_current__F) /
398 (var_sodium_potassium_pump_current__R *
399 var_sodium_potassium_pump_current__T))) +
400 (0.0353 *
401 exp(((-var_sodium_potassium_pump_current__V) *
402 var_sodium_potassium_pump_current__F) /
403 (var_sodium_potassium_pump_current__R *
404 var_sodium_potassium_pump_current__T)))); // picoA_per_picoF
406 var_chaste_interface__fast_sodium_current_j_gate__j; // dimensionless
408 var_chaste_interface__fast_sodium_current_h_gate__h; // dimensionless
410 14.838; // nanoS_per_picoF
412 var_chaste_interface__fast_sodium_current_m_gate__m; // dimensionless
414 var_chaste_interface__membrane__V; // millivolt
416 ((var_reversal_potentials__R * var_reversal_potentials__T) /
417 var_reversal_potentials__F) *
418 log(var_reversal_potentials__Na_o /
419 var_reversal_potentials__Na_i); // millivolt
421 var_reversal_potentials__E_Na; // millivolt
423 var_fast_sodium_current__g_Na *
424 pow(var_fast_sodium_current__m, 3.0) * var_fast_sodium_current__h *
425 var_fast_sodium_current__j *
426 (var_fast_sodium_current__V -
427 var_fast_sodium_current__E_Na); // picoA_per_picoF
429 var_chaste_interface__membrane__V; // millivolt
431 var_reversal_potentials__E_Na; // millivolt
433 0.00029; // nanoS_per_picoF
435 var_sodium_background_current__g_bna *
436 (var_sodium_background_current__V -
437 var_sodium_background_current__E_Na); // picoA_per_picoF
439 2.5; // dimensionless
441 0.35; // dimensionless
443 0.1; // dimensionless
445 1.38; // millimolar
447 1000.0; // picoA_per_picoF
449 var_membrane__F; // coulomb_per_millimole
451 var_chaste_interface__calcium_dynamics__Ca_i; // millimolar
453 var_calcium_dynamics__Ca_o; // millimolar
455 var_chaste_interface__membrane__V; // millivolt
457 var_membrane__R; // joule_per_mole_kelvin
459 87.5; // millimolar
461 var_sodium_dynamics__Na_o; // millimolar
463 var_chaste_interface__sodium_dynamics__Na_i; // millimolar
465 var_membrane__T; // kelvin
467 (var_sodium_calcium_exchanger_current__K_NaCa *
468 ((exp((var_sodium_calcium_exchanger_current__gamma *
469 var_sodium_calcium_exchanger_current__V *
470 var_sodium_calcium_exchanger_current__F) /
471 (var_sodium_calcium_exchanger_current__R *
472 var_sodium_calcium_exchanger_current__T)) *
473 pow(var_sodium_calcium_exchanger_current__Na_i, 3.0) *
474 var_sodium_calcium_exchanger_current__Ca_o) -
475 (exp(((var_sodium_calcium_exchanger_current__gamma - 1.0) *
476 var_sodium_calcium_exchanger_current__V *
477 var_sodium_calcium_exchanger_current__F) /
478 (var_sodium_calcium_exchanger_current__R *
479 var_sodium_calcium_exchanger_current__T)) *
480 pow(var_sodium_calcium_exchanger_current__Na_o, 3.0) *
481 var_sodium_calcium_exchanger_current__Ca_i *
482 var_sodium_calcium_exchanger_current__alpha))) /
483 ((pow(var_sodium_calcium_exchanger_current__Km_Nai, 3.0) +
484 pow(var_sodium_calcium_exchanger_current__Na_o, 3.0)) *
485 (var_sodium_calcium_exchanger_current__Km_Ca +
486 var_sodium_calcium_exchanger_current__Ca_o) *
487 (1.0 +
488 (var_sodium_calcium_exchanger_current__K_sat *
489 exp(((var_sodium_calcium_exchanger_current__gamma - 1.0) *
490 var_sodium_calcium_exchanger_current__V *
491 var_sodium_calcium_exchanger_current__F) /
492 (var_sodium_calcium_exchanger_current__R *
493 var_sodium_calcium_exchanger_current__T))))); // picoA_per_picoF
495 var_calcium_dynamics__Ca_o; // millimolar
497 var_chaste_interface__calcium_dynamics__Ca_i; // millimolar
499 ((0.5 * var_reversal_potentials__R * var_reversal_potentials__T) /
500 var_reversal_potentials__F) *
501 log(var_reversal_potentials__Ca_o /
502 var_reversal_potentials__Ca_i); // millivolt
504 var_reversal_potentials__E_Ca; // millivolt
506 0.000592; // nanoS_per_picoF
508 var_chaste_interface__membrane__V; // millivolt
510 var_calcium_background_current__g_bca *
511 (var_calcium_background_current__V -
512 var_calcium_background_current__E_Ca); // picoA_per_picoF
514 0.0146; // nanoS_per_picoF
516 var_chaste_interface__membrane__V; // millivolt
518 var_reversal_potentials__E_K; // millivolt
520 (var_potassium_pump_current__g_pK *
521 (var_potassium_pump_current__V -
522 var_potassium_pump_current__E_K)) /
523 (1.0 + exp((25.0 - var_potassium_pump_current__V) /
524 5.98)); // picoA_per_picoF
527 var_chaste_interface__calcium_dynamics__Ca_i; // millimolar
529 0.1238; // picoA_per_picoF
531 (var_calcium_pump_current__g_pCa * var_calcium_pump_current__Ca_i) /
532 (var_calcium_pump_current__Ca_i +
533 var_calcium_pump_current__K_pCa); // picoA_per_picoF
536 var_rapid_time_dependent_potassium_current__V; // millivolt
538 var_rapid_time_dependent_potassium_current_Xr1_gate__alpha_xr1 =
539 450.0 /
540 (1.0 +
541 exp(((-45.0) -
542 var_rapid_time_dependent_potassium_current_Xr1_gate__V) /
543 10.0)); // dimensionless
545 var_rapid_time_dependent_potassium_current_Xr1_gate__beta_xr1 =
546 6.0 /
547 (1.0 +
548 exp((var_rapid_time_dependent_potassium_current_Xr1_gate__V +
549 30.0) /
550 11.5)); // dimensionless
552 var_rapid_time_dependent_potassium_current_Xr1_gate__tau_xr1 =
553 1.0 *
554 var_rapid_time_dependent_potassium_current_Xr1_gate__alpha_xr1 *
555 var_rapid_time_dependent_potassium_current_Xr1_gate__beta_xr1; // millisecond
557 var_rapid_time_dependent_potassium_current_Xr1_gate__xr1_inf =
558 1.0 /
559 (1.0 +
560 exp(((-26.0) -
561 var_rapid_time_dependent_potassium_current_Xr1_gate__V) /
562 7.0)); // dimensionless
564 var_rapid_time_dependent_potassium_current__V; // millivolt
566 var_rapid_time_dependent_potassium_current_Xr2_gate__alpha_xr2 =
567 3.0 /
568 (1.0 +
569 exp(((-60.0) -
570 var_rapid_time_dependent_potassium_current_Xr2_gate__V) /
571 20.0)); // dimensionless
573 var_rapid_time_dependent_potassium_current_Xr2_gate__beta_xr2 =
574 1.12 /
575 (1.0 +
576 exp((var_rapid_time_dependent_potassium_current_Xr2_gate__V -
577 60.0) /
578 20.0)); // dimensionless
580 var_rapid_time_dependent_potassium_current_Xr2_gate__tau_xr2 =
581 1.0 *
582 var_rapid_time_dependent_potassium_current_Xr2_gate__alpha_xr2 *
583 var_rapid_time_dependent_potassium_current_Xr2_gate__beta_xr2; // millisecond
585 var_rapid_time_dependent_potassium_current_Xr2_gate__xr2_inf =
586 1.0 /
587 (1.0 +
588 exp((var_rapid_time_dependent_potassium_current_Xr2_gate__V +
589 88.0) /
590 24.0)); // dimensionless
592 var_slow_time_dependent_potassium_current__V; // millivolt
594 var_slow_time_dependent_potassium_current_Xs_gate__beta_xs =
595 1.0 /
596 (1.0 +
597 exp((var_slow_time_dependent_potassium_current_Xs_gate__V -
598 35.0) /
599 15.0)); // dimensionless
601 var_slow_time_dependent_potassium_current_Xs_gate__alpha_xs =
602 1400.0 /
603 sqrt(
604 1.0 +
605 exp((5.0 -
606 var_slow_time_dependent_potassium_current_Xs_gate__V) /
607 6.0)); // dimensionless
609 var_slow_time_dependent_potassium_current_Xs_gate__tau_xs =
610 (1.0 *
611 var_slow_time_dependent_potassium_current_Xs_gate__alpha_xs *
612 var_slow_time_dependent_potassium_current_Xs_gate__beta_xs) +
613 80.0; // millisecond
615 var_slow_time_dependent_potassium_current_Xs_gate__xs_inf =
616 1.0 /
617 (1.0 +
618 exp(((-5.0) -
619 var_slow_time_dependent_potassium_current_Xs_gate__V) /
620 14.0)); // dimensionless
622 var_fast_sodium_current__V; // millivolt
624 1.0 / (1.0 + exp(((-60.0) - var_fast_sodium_current_m_gate__V) /
625 5.0)); // dimensionless
627 (0.1 /
628 (1.0 + exp((var_fast_sodium_current_m_gate__V + 35.0) / 5.0))) +
629 (0.1 / (1.0 + exp((var_fast_sodium_current_m_gate__V - 50.0) /
630 200.0))); // dimensionless
632 1.0 * var_fast_sodium_current_m_gate__alpha_m *
633 var_fast_sodium_current_m_gate__beta_m; // millisecond
635 1.0 / pow(1.0 + exp(((-56.86) - var_fast_sodium_current_m_gate__V) /
636 9.03),
637 2.0); // dimensionless
639 var_fast_sodium_current__V; // millivolt
641 1.0 /
642 pow(1.0 + exp((var_fast_sodium_current_h_gate__V + 71.55) / 7.43),
643 2.0); // dimensionless
645 (var_fast_sodium_current_h_gate__V < (-40.0))
646 ? ((2.7 * exp(0.079 * var_fast_sodium_current_h_gate__V)) +
647 (310000.0 * exp(0.3485 * var_fast_sodium_current_h_gate__V)))
648 : (0.77 /
649 (0.13 *
650 (1.0 + exp((var_fast_sodium_current_h_gate__V + 10.66) /
651 (-11.1))))); // per_millisecond
653 (var_fast_sodium_current_h_gate__V < (-40.0))
654 ? (0.057 *
655 exp((-(var_fast_sodium_current_h_gate__V + 80.0)) / 6.8))
656 : 0.0; // per_millisecond
658 1.0 / (var_fast_sodium_current_h_gate__alpha_h +
659 var_fast_sodium_current_h_gate__beta_h); // millisecond
661 var_fast_sodium_current__V; // millivolt
663 1.0 /
664 pow(1.0 + exp((var_fast_sodium_current_j_gate__V + 71.55) / 7.43),
665 2.0); // dimensionless
667 (var_fast_sodium_current_j_gate__V < (-40.0))
668 ? ((((((-25428.0) *
669 exp(0.2444 * var_fast_sodium_current_j_gate__V)) -
670 (6.948e-06 *
671 exp((-0.04391) * var_fast_sodium_current_j_gate__V))) *
672 (var_fast_sodium_current_j_gate__V + 37.78)) /
673 1.0) /
674 (1.0 +
675 exp(0.311 * (var_fast_sodium_current_j_gate__V + 79.23))))
676 : 0.0; // per_millisecond
678 (var_fast_sodium_current_j_gate__V < (-40.0))
679 ? ((0.02424 *
680 exp((-0.01052) * var_fast_sodium_current_j_gate__V)) /
681 (1.0 + exp((-0.1378) *
682 (var_fast_sodium_current_j_gate__V + 40.14))))
683 : ((0.6 * exp(0.057 * var_fast_sodium_current_j_gate__V)) /
684 (1.0 + exp((-0.1) * (var_fast_sodium_current_j_gate__V +
685 32.0)))); // per_millisecond
687 1.0 / (var_fast_sodium_current_j_gate__alpha_j +
688 var_fast_sodium_current_j_gate__beta_j); // millisecond
690 var_L_type_Ca_current__V; // millivolt
692 (1.4 /
693 (1.0 + exp(((-35.0) - var_L_type_Ca_current_d_gate__V) / 13.0))) +
694 0.25; // dimensionless
696 1.0 / (1.0 + exp((50.0 - var_L_type_Ca_current_d_gate__V) /
697 20.0)); // millisecond
699 1.4 / (1.0 + exp((var_L_type_Ca_current_d_gate__V + 5.0) /
700 5.0)); // dimensionless
702 (1.0 * var_L_type_Ca_current_d_gate__alpha_d *
703 var_L_type_Ca_current_d_gate__beta_d) +
704 var_L_type_Ca_current_d_gate__gamma_d; // millisecond
706 1.0 / (1.0 + exp(((-8.0) - var_L_type_Ca_current_d_gate__V) /
707 7.5)); // dimensionless
709 var_L_type_Ca_current__V; // millivolt
711 (1102.5 *
712 exp((-pow(var_L_type_Ca_current_f_gate__V + 27.0, 2.0)) / 225.0)) +
713 (200.0 /
714 (1.0 + exp((13.0 - var_L_type_Ca_current_f_gate__V) / 10.0))) +
715 (180.0 /
716 (1.0 + exp((var_L_type_Ca_current_f_gate__V + 30.0) / 10.0))) +
717 20.0; // millisecond
719 1.0 / (1.0 + exp((var_L_type_Ca_current_f_gate__V + 20.0) /
720 7.0)); // dimensionless
722 var_L_type_Ca_current__V; // millivolt
724 (0.67 /
725 (1.0 + exp((var_L_type_Ca_current_f2_gate__V + 35.0) / 7.0))) +
726 0.33; // dimensionless
728 (562.0 * exp((-pow(var_L_type_Ca_current_f2_gate__V + 27.0, 2.0)) /
729 240.0)) +
730 (31.0 /
731 (1.0 + exp((25.0 - var_L_type_Ca_current_f2_gate__V) / 10.0))) +
732 (80.0 / (1.0 + exp((var_L_type_Ca_current_f2_gate__V + 30.0) /
733 10.0))); // millisecond
735 var_L_type_Ca_current__Ca_ss; // millimolar
737 (80.0 /
738 (1.0 + pow(var_L_type_Ca_current_fCass_gate__Ca_ss / 0.05, 2.0))) +
739 2.0; // millisecond
741 (0.6 /
742 (1.0 + pow(var_L_type_Ca_current_fCass_gate__Ca_ss / 0.05, 2.0))) +
743 0.4; // dimensionless
745 var_transient_outward_current__V; // millivolt
747 1.0 / (1.0 + exp((var_transient_outward_current_s_gate__V +
748 s_inf_factor) /
749 5.0)); // dimensionless
751 (s_tau_f1 *
752 exp((-pow(var_transient_outward_current_s_gate__V + s_tau_f2,
753 2.0)) /
754 s_tau_f3)) +
755 s_tau_f4 +
756 s_tau_f5 *
757 ((5.0 /
758 (1.0 + exp((var_transient_outward_current_s_gate__V - 20.0) /
759 5.0))) +
760 3.0); // millisecond
762 var_transient_outward_current__V; // millivolt
764 1.0 / (1.0 + exp((20.0 - var_transient_outward_current_r_gate__V) /
765 6.0)); // dimensionless
767 (9.5 *
768 exp((-pow(var_transient_outward_current_r_gate__V + 40.0, 2.0)) /
769 1800.0)) +
770 0.8; // millisecond
772 var_chaste_interface__calcium_dynamics__Ca_i; // millimolar
774 var_chaste_interface__calcium_dynamics__Ca_SR; // millimolar
776 var_chaste_interface__calcium_dynamics__Ca_ss; // millimolar
779 var_chaste_interface__calcium_dynamics__R_prime; // dimensionless
781 0.15; // per_millimolar2_per_millisecond
786 var_calcium_dynamics__max_sr -
787 ((var_calcium_dynamics__max_sr - var_calcium_dynamics__min_sr) /
788 (1.0 + pow(var_calcium_dynamics__EC / var_calcium_dynamics__Ca_SR,
789 2.0))); // dimensionless
791 var_calcium_dynamics__k1_prime /
792 var_calcium_dynamics__kcasr; // per_millimolar2_per_millisecond
795 (var_calcium_dynamics__k1 * pow(var_calcium_dynamics__Ca_ss, 2.0) *
796 var_calcium_dynamics__R_prime) /
797 (var_calcium_dynamics__k3 +
798 (var_calcium_dynamics__k1 *
799 pow(var_calcium_dynamics__Ca_ss, 2.0))); // dimensionless
801 var_calcium_dynamics__V_rel * var_calcium_dynamics__O *
802 (var_calcium_dynamics__Ca_SR -
803 var_calcium_dynamics__Ca_ss); // millimolar_per_millisecond
805 0.006375; // millimolar_per_millisecond
808 var_calcium_dynamics__Vmax_up /
809 (1.0 + (pow(var_calcium_dynamics__K_up, 2.0) /
810 pow(var_calcium_dynamics__Ca_i,
811 2.0))); // millimolar_per_millisecond
813 0.00036; // per_millisecond
815 var_calcium_dynamics__V_leak *
816 (var_calcium_dynamics__Ca_SR -
817 var_calcium_dynamics__Ca_i); // millimolar_per_millisecond
819 0.0038; // per_millisecond
821 var_calcium_dynamics__V_xfer *
822 (var_calcium_dynamics__Ca_ss -
823 var_calcium_dynamics__Ca_i); // millimolar_per_millisecond
825 0.045; // per_millimolar_per_millisecond
827 var_calcium_dynamics__k2_prime *
828 var_calcium_dynamics__kcasr; // per_millimolar_per_millisecond
833 1.0 /
834 (1.0 +
835 ((var_calcium_dynamics__Buf_c * var_calcium_dynamics__K_buf_c) /
836 pow(var_calcium_dynamics__Ca_i + var_calcium_dynamics__K_buf_c,
837 2.0))); // dimensionless
841 1.0 /
842 (1.0 +
843 ((var_calcium_dynamics__Buf_sr * var_calcium_dynamics__K_buf_sr) /
844 pow(var_calcium_dynamics__Ca_SR + var_calcium_dynamics__K_buf_sr,
845 2.0))); // dimensionless
849 1.0 /
850 (1.0 +
851 ((var_calcium_dynamics__Buf_ss * var_calcium_dynamics__K_buf_ss) /
852 pow(var_calcium_dynamics__Ca_ss + var_calcium_dynamics__K_buf_ss,
853 2.0))); // dimensionless
857 var_membrane__V_c; // micrometre3
859 var_membrane__F; // coulomb_per_millimole
862 var_L_type_Ca_current__i_CaL; // picoA_per_picoF
864 var_sodium_calcium_exchanger_current__i_NaCa; // picoA_per_picoF
866 var_calcium_pump_current__i_p_Ca; // picoA_per_picoF
868 var_calcium_background_current__i_b_Ca; // picoA_per_picoF
870 var_calcium_dynamics__Ca_i_bufc *
871 (((((var_calcium_dynamics__i_leak - var_calcium_dynamics__i_up) *
872 var_calcium_dynamics__V_sr) /
873 var_calcium_dynamics__V_c) +
874 var_calcium_dynamics__i_xfer) -
875 ((1.0 *
876 ((var_calcium_dynamics__i_b_Ca + var_calcium_dynamics__i_p_Ca) -
877 (2.0 * var_calcium_dynamics__i_NaCa)) *
878 var_calcium_dynamics__Cm) /
879 (2.0 * 1.0 * var_calcium_dynamics__V_c *
880 var_calcium_dynamics__F))); // 'millimole per litre per
881 // millisecond'
883 var_calcium_dynamics__Ca_sr_bufsr *
884 (var_calcium_dynamics__i_up -
885 (var_calcium_dynamics__i_rel +
886 var_calcium_dynamics__i_leak)); // 'millimole per litre per
887 // millisecond'
889 var_calcium_dynamics__Ca_ss_bufss *
890 (((((-1.0) * var_calcium_dynamics__i_CaL *
891 var_calcium_dynamics__Cm) /
892 (2.0 * 1.0 * var_calcium_dynamics__V_ss *
893 var_calcium_dynamics__F)) +
894 ((var_calcium_dynamics__i_rel * var_calcium_dynamics__V_sr) /
895 var_calcium_dynamics__V_ss)) -
896 ((var_calcium_dynamics__i_xfer * var_calcium_dynamics__V_c) /
897 var_calcium_dynamics__V_ss)); // 'millimole per litre per
898 // millisecond'
900 ((-var_calcium_dynamics__k2) * var_calcium_dynamics__Ca_ss *
901 var_calcium_dynamics__R_prime) +
902 (var_calcium_dynamics__k4 *
903 (1.0 - var_calcium_dynamics__R_prime)); // per_millisecond
905 var_membrane__F; // coulomb_per_millimole
908 var_membrane__V_c; // micrometre3
910 var_fast_sodium_current__i_Na; // picoA_per_picoF
912 var_sodium_calcium_exchanger_current__i_NaCa; // picoA_per_picoF
914 var_sodium_potassium_pump_current__i_NaK; // picoA_per_picoF
916 var_sodium_background_current__i_b_Na; // picoA_per_picoF
918 (((-1.0) *
919 (var_sodium_dynamics__i_Na + var_sodium_dynamics__i_b_Na +
920 (3.0 * var_sodium_dynamics__i_NaK) +
921 (3.0 * var_sodium_dynamics__i_NaCa))) /
922 (1.0 * var_sodium_dynamics__V_c * var_sodium_dynamics__F)) *
923 var_sodium_dynamics__Cm; // 'millimole per litre per millisecond'
925 var_membrane__F; // coulomb_per_millimole
928 var_membrane__V_c; // micrometre3
930 var_inward_rectifier_potassium_current__i_K1; // picoA_per_picoF
932 var_transient_outward_current__i_to; // picoA_per_picoF
934 var_sodium_potassium_pump_current__i_NaK; // picoA_per_picoF
936 var_rapid_time_dependent_potassium_current__i_Kr; // picoA_per_picoF
938 var_slow_time_dependent_potassium_current__i_Ks; // picoA_per_picoF
940 var_potassium_pump_current__i_p_K; // picoA_per_picoF
942 var_potassium_dynamics__chaste_interface__chaste_membrane_capacitance =
943 1.0; // uF_per_cm2
945 var_chaste_interface__membrane__i_Stim; // uA_per_cm2
947 var_potassium_dynamics__i_Stim_converter /
948 var_potassium_dynamics__chaste_interface__chaste_membrane_capacitance; // picoA_per_picoF
950 (((-1.0) *
951 ((var_potassium_dynamics__i_K1 + var_potassium_dynamics__i_to +
952 var_potassium_dynamics__i_Kr + var_potassium_dynamics__i_Ks +
953 var_potassium_dynamics__i_p_K +
954 var_potassium_dynamics__i_Stim) -
955 (2.0 * var_potassium_dynamics__i_NaK))) /
956 (1.0 * var_potassium_dynamics__V_c * var_potassium_dynamics__F)) *
957 var_potassium_dynamics__Cm; // 'millimole per litre per millisecond'
959 var_chaste_interface__calcium_dynamics__d_Ca_i_d_environment__time =
960 var_calcium_dynamics__d_Ca_i_d_environment__time; // millimolar_per_millisecond
962 var_chaste_interface__calcium_dynamics__d_Ca_SR_d_environment__time =
963 var_calcium_dynamics__d_Ca_SR_d_environment__time; // millimolar_per_millisecond
965 var_chaste_interface__calcium_dynamics__d_Ca_ss_d_environment__time =
966 var_calcium_dynamics__d_Ca_ss_d_environment__time; // millimolar_per_millisecond
968 var_chaste_interface__calcium_dynamics__d_R_prime_d_environment__time =
969 var_calcium_dynamics__d_R_prime_d_environment__time; // per_millisecond
971 var_chaste_interface__sodium_dynamics__d_Na_i_d_environment__time =
972 var_sodium_dynamics__d_Na_i_d_environment__time; // millimolar_per_millisecond
974 var_chaste_interface__potassium_dynamics__d_K_i_d_environment__time =
975 var_potassium_dynamics__d_K_i_d_environment__time; // millimolar_per_millisecond
977 var_chaste_interface__calcium_dynamics__d_Ca_i_d_environment__time; // 'millimole per litre per millisecond'
979 var_chaste_interface__calcium_dynamics__d_Ca_SR_d_environment__time; // 'millimole per litre per millisecond'
981 var_chaste_interface__calcium_dynamics__d_Ca_ss_d_environment__time; // 'millimole per litre per millisecond'
983 var_chaste_interface__calcium_dynamics__d_R_prime_d_environment__time; // per_millisecond
985 var_chaste_interface__sodium_dynamics__d_Na_i_d_environment__time; // 'millimole per litre per millisecond'
987 var_chaste_interface__potassium_dynamics__d_K_i_d_environment__time; // 'millimole per litre per millisecond'
988
990 var_inward_rectifier_potassium_current__i_K1; // picoA_per_picoF
992 var_transient_outward_current__i_to; // picoA_per_picoF
994 var_rapid_time_dependent_potassium_current__i_Kr; // picoA_per_picoF
996 var_slow_time_dependent_potassium_current__i_Ks; // picoA_per_picoF
998 var_L_type_Ca_current__i_CaL; // picoA_per_picoF
1000 var_sodium_potassium_pump_current__i_NaK; // picoA_per_picoF
1002 var_fast_sodium_current__i_Na; // picoA_per_picoF
1004 var_sodium_background_current__i_b_Na; // picoA_per_picoF
1006 var_sodium_calcium_exchanger_current__i_NaCa; // picoA_per_picoF
1008 var_calcium_background_current__i_b_Ca; // picoA_per_picoF
1010 var_potassium_pump_current__i_p_K; // picoA_per_picoF
1012 var_calcium_pump_current__i_p_Ca; // picoA_per_picoF
1014 var_chaste_interface__membrane__i_Stim; // uA_per_cm2
1016 var_membrane__chaste_interface__chaste_membrane_capacitance =
1017 1.0; // uF_per_cm2
1019 var_membrane__i_Stim_converter /
1020 var_membrane__chaste_interface__chaste_membrane_capacitance; // picoA_per_picoF
1022 ((-1.0) / 1.0) *
1023 (var_membrane__i_K1 + var_membrane__i_to + var_membrane__i_Kr +
1024 var_membrane__i_Ks + var_membrane__i_CaL + var_membrane__i_NaK +
1025 var_membrane__i_Na + var_membrane__i_b_Na + var_membrane__i_NaCa +
1026 var_membrane__i_b_Ca + var_membrane__i_p_K + var_membrane__i_p_Ca +
1027 var_membrane__i_Stim); // 'millivolt per millisecond'
1029 var_chaste_interface__membrane__d_V_d_environment__time =
1030 var_membrane__d_V_d_environment__time; // ___units_1
1031 d_dt_chaste_interface__membrane__V =
1032 var_chaste_interface__membrane__d_V_d_environment__time; // 'millivolt
1033 // per
1034 // millisecond'
1035 outarray[0][i] = d_dt_chaste_interface__membrane__V;
1036 outarray[1][i] =
1037 var_rapid_time_dependent_potassium_current_Xr1_gate__xr1_inf;
1038 m_gates_tau[0][i] =
1039 var_rapid_time_dependent_potassium_current_Xr1_gate__tau_xr1;
1040 outarray[2][i] =
1041 var_rapid_time_dependent_potassium_current_Xr2_gate__xr2_inf;
1042 m_gates_tau[1][i] =
1043 var_rapid_time_dependent_potassium_current_Xr2_gate__tau_xr2;
1044 outarray[3][i] =
1045 var_slow_time_dependent_potassium_current_Xs_gate__xs_inf;
1046 m_gates_tau[2][i] =
1047 var_slow_time_dependent_potassium_current_Xs_gate__tau_xs;
1048 outarray[4][i] = var_fast_sodium_current_m_gate__m_inf;
1049 m_gates_tau[3][i] = var_fast_sodium_current_m_gate__tau_m;
1050 outarray[5][i] = var_fast_sodium_current_h_gate__h_inf;
1051 m_gates_tau[4][i] = var_fast_sodium_current_h_gate__tau_h;
1052 outarray[6][i] = var_fast_sodium_current_j_gate__j_inf;
1053 m_gates_tau[5][i] = var_fast_sodium_current_j_gate__tau_j;
1054 outarray[7][i] = var_L_type_Ca_current_d_gate__d_inf;
1055 m_gates_tau[6][i] = var_L_type_Ca_current_d_gate__tau_d;
1056 outarray[8][i] = var_L_type_Ca_current_f_gate__f_inf;
1057 m_gates_tau[7][i] = var_L_type_Ca_current_f_gate__tau_f;
1058 outarray[9][i] = var_L_type_Ca_current_f2_gate__f2_inf;
1059 m_gates_tau[8][i] = var_L_type_Ca_current_f2_gate__tau_f2;
1060 outarray[10][i] = var_L_type_Ca_current_fCass_gate__fCass_inf;
1061 m_gates_tau[9][i] = var_L_type_Ca_current_fCass_gate__tau_fCass;
1062 outarray[11][i] = var_transient_outward_current_s_gate__s_inf;
1063 m_gates_tau[10][i] = var_transient_outward_current_s_gate__tau_s;
1064 outarray[12][i] = var_transient_outward_current_r_gate__r_inf;
1065 m_gates_tau[11][i] = var_transient_outward_current_r_gate__tau_r;
1066 outarray[13][i] = d_dt_chaste_interface__calcium_dynamics__Ca_i;
1067 outarray[14][i] = d_dt_chaste_interface__calcium_dynamics__Ca_SR;
1068 outarray[15][i] = d_dt_chaste_interface__calcium_dynamics__Ca_ss;
1069 outarray[16][i] = d_dt_chaste_interface__calcium_dynamics__R_prime;
1070 outarray[17][i] = d_dt_chaste_interface__sodium_dynamics__Na_i;
1071 outarray[18][i] = d_dt_chaste_interface__potassium_dynamics__K_i;
1072 }
1073}
Array< OneD, Array< OneD, NekDouble > > m_gates_tau
Storage for gate tau values.
Definition: CellModel.h:143
References g_Ks, g_to, k_0, tinysimd::log(), Nektar::CellModel::m_gates_tau, Nektar::CellModel::m_nq, s_inf_factor, s_tau_f1, s_tau_f2, s_tau_f3, s_tau_f4, s_tau_f5, and tinysimd::sqrt().
Member Data Documentation
◆ className
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static |
Initial value:
=
tKey RegisterCreatorFunction(tKey idKey, CreatorFunction classCreator, std::string pDesc="")
Register a class with the factory.
Definition: NekFactory.hpp:197
static CellModelSharedPtr create(const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField)
Creates an instance of this class.
Definition: TenTusscher06.h:47
Name of class.
Definition at line 56 of file TenTusscher06.h.
◆ def
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staticprotected |
Initial value:
=
LibUtilities::SessionReader::RegisterDefaultSolverInfo("CellModelVariant",
"Epicardium")
static std::string RegisterDefaultSolverInfo(const std::string &pName, const std::string &pValue)
Registers the default string value of a solver info property.
Definition: SessionReader.h:593
Definition at line 97 of file TenTusscher06.h.
◆ g_Ks
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protected |
Definition at line 78 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ g_to
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protected |
Definition at line 77 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ k_0
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protected |
Definition at line 85 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ lookupIds
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staticprotected |
Initial value:
= {
static std::string RegisterEnumValue(std::string pEnum, std::string pString, int pEnumValue)
Registers an enumeration value.
Definition: SessionReader.h:559
Definition at line 96 of file TenTusscher06.h.
◆ model_variant
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protected |
Definition at line 94 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_SetInitialConditions().
◆ s_inf_factor
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protected |
Definition at line 79 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ s_tau_f1
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protected |
Definition at line 80 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ s_tau_f2
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protected |
Definition at line 81 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ s_tau_f3
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protected |
Definition at line 82 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ s_tau_f4
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protected |
Definition at line 83 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
◆ s_tau_f5
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protected |
Definition at line 84 of file TenTusscher06.h.
Referenced by TenTusscher06(), and v_Update().
