ExpListHomogeneous1D.h

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///////////////////////////////////////////////////////////////////////////////
//
// File ExpListHomogeneous1D.h
//
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// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// License for the specific language governing rights and limitations under
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// copy of this software and associated documentation files (the "Software"),
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//
// Description: Base class for expansions which are homogeneous in 1
// direction
//
///////////////////////////////////////////////////////////////////////////////

#ifndef EXPLISTHOMO1D_H
#define EXPLISTHOMO1D_H
#include <MultiRegions/MultiRegionsDeclspec.h>
#include <vector>
#include <MultiRegions/MultiRegions.hpp>
#include <MultiRegions/ExpList.h>
#include <LibUtilities/FFT/NektarFFT.h>
#include <LibUtilities/Communication/Transposition.h>

namespace Nektar
{
    namespace MultiRegions
    {

        enum Homogeneous1DMatType
        {
            eForwardsCoeffSpace1D,
            eBackwardsCoeffSpace1D,
            eForwardsPhysSpace1D,
            eBackwardsPhysSpace1D
        };

        /// A map between homo matrix keys and their associated block
        /// matrices.
        typedef map< Homogeneous1DMatType, DNekBlkMatSharedPtr> Homo1DBlockMatrixMap;
        /// A shared pointer to a BlockMatrixMap.
        typedef boost::shared_ptr<Homo1DBlockMatrixMap> Homo1DBlockMatrixMapShPtr;

        // Forward declaration for typedefs
        class ExpListHomogeneous1D;

        /// Shared pointer to an ExpList3DHomogeneous1D object.
        typedef boost::shared_ptr<ExpListHomogeneous1D>   ExpListHomogeneous1DSharedPtr;
        /// Vector of pointers to ExpList3DHomogeneous1D objects.
        typedef std::vector< ExpListHomogeneous1DSharedPtr > ExpListHomogeneous1DVector;
        /// Iterator for the vector of ExpList3DHomogeneous1D pointers.
        typedef std::vector< ExpListHomogeneous1DSharedPtr >::iterator ExpListHomogeneous1DVectorIter;

        /// Abstraction of a two-dimensional multi-elemental expansion which
        /// is merely a collection of local expansions.
        class ExpListHomogeneous1D: public ExpList
        {
        public:
            /// Default constructor.
            MULTI_REGIONS_EXPORT ExpListHomogeneous1D();

            MULTI_REGIONS_EXPORT ExpListHomogeneous1D(const LibUtilities::SessionReaderSharedPtr &pSession,const LibUtilities::BasisKey &HomoBasis, const NekDouble lz, const bool useFFT, const bool dealiasing);

            /// Copy constructor.
            MULTI_REGIONS_EXPORT ExpListHomogeneous1D(const ExpListHomogeneous1D &In);
            
            MULTI_REGIONS_EXPORT ExpListHomogeneous1D(const ExpListHomogeneous1D &In,
                                                      const std::vector<unsigned int> &eIDs);

            /// Destructor.
            MULTI_REGIONS_EXPORT virtual ~ExpListHomogeneous1D();

            MULTI_REGIONS_EXPORT void Homogeneous1DTrans(const Array<OneD, const NekDouble> &inarray, 
                                                         Array<OneD, NekDouble> &outarray, 
                                                         bool IsForwards, 
                                                         
                                 CoeffState coeffstate = eLocal,
                                                         bool Shuff = true,
                                                         bool UnShuff = true);

            inline void HomogeneousFwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                            Array<OneD, NekDouble> &outarray, 
                                            
                                            CoeffState coeffstate = eLocal,
                                            bool Shuff = true,
                                            bool UnShuff = true);

            inline void HomogeneousBwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                            Array<OneD, NekDouble> &outarray,
                                            CoeffState coeffstate = eLocal,
                                            bool Shuff = true,
                                            bool UnShuff = true);
            
            inline void DealiasedProd(const Array<OneD, NekDouble> &inarray1,
                                      const Array<OneD, NekDouble> &inarray2,
                                      Array<OneD, NekDouble> &outarray, 
                                      CoeffState coeffstate = eLocal);

            LibUtilities::BasisSharedPtr  GetHomogeneousBasis(void)
            {
                return m_homogeneousBasis;
            }
            
            MULTI_REGIONS_EXPORT void PhysDeriv(const Array<OneD, const NekDouble> &inarray,
                                                Array<OneD, NekDouble> &out_d0,
                                                Array<OneD, NekDouble> &out_d1, 
                                                Array<OneD, NekDouble> &out_d2);
            
            MULTI_REGIONS_EXPORT void PhysDeriv(Direction edir,
                                                const Array<OneD, const NekDouble> &inarray,
                                                Array<OneD, NekDouble> &out_d);
            
            ExpListSharedPtr &GetPlane(int n)
            {
                return m_planes[n];
            }
            
            LibUtilities::TranspositionSharedPtr      m_transposition;
            LibUtilities::CommSharedPtr               m_StripZcomm;
        protected:
            
            /// FFT variables
            bool                                    m_useFFT;
            LibUtilities::NektarFFTSharedPtr        m_FFT;

            LibUtilities::NektarFFTSharedPtr        m_FFT_deal;

            Array<OneD,NekDouble>                   m_tmpIN;
            Array<OneD,NekDouble>                   m_tmpOUT;
            
            /// Definition of the total number of degrees of freedom and
            /// quadrature points. Sets up the storage for \a m_coeff and \a
            ///  m_phys.
            LibUtilities::BasisSharedPtr    m_homogeneousBasis;
            NekDouble                       m_lhom;  ///< Width of homogeneous direction
            Homo1DBlockMatrixMapShPtr       m_homogeneous1DBlockMat;
            Array<OneD, ExpListSharedPtr>   m_planes;
            
            DNekBlkMatSharedPtr GenHomogeneous1DBlockMatrix(Homogeneous1DMatType mattype, CoeffState coeffstate = eLocal) const;
            
            DNekBlkMatSharedPtr GetHomogeneous1DBlockMatrix(Homogeneous1DMatType mattype, CoeffState coeffstate = eLocal) const;

            
            NekDouble GetSpecVanVisc(const int k)
            {
                NekDouble returnval = 0.0;

                if(m_specVanVisc.num_elements())
                {
                    returnval = m_specVanVisc[k];
                }
                
                return returnval; 
            }
            
            //  virtual functions
            virtual void v_SetHomo1DSpecVanVisc(Array<OneD, NekDouble> visc)
            {
                m_specVanVisc = visc;
            }

            virtual int v_GetNumElmts(void)
            {
                return m_planes[0]->GetExpSize();
            }

            virtual LibUtilities::BasisSharedPtr  v_GetHomogeneousBasis(void)
            {
                return GetHomogeneousBasis();
            }

            virtual void v_FwdTrans(const Array<OneD,const NekDouble> &inarray,
                                    Array<OneD,      NekDouble> &outarray,
                                    CoeffState coeffstate);
            
            virtual void v_FwdTrans_IterPerExp(const Array<OneD,const NekDouble> &inarray,
                                               Array<OneD,      NekDouble> &outarray);
            
            virtual void v_BwdTrans(const Array<OneD,const NekDouble> &inarray,
                                    Array<OneD,      NekDouble> &outarray,
                                    CoeffState coeffstate);
            
            virtual void v_BwdTrans_IterPerExp(const Array<OneD,const NekDouble> &inarray,
                                               Array<OneD,      NekDouble> &outarray);
            
            virtual void v_IProductWRTBase(const Array<OneD, const NekDouble> &inarray, 
                                           Array<OneD, NekDouble> &outarray, 
                                           CoeffState coeffstate);
            
            virtual void v_IProductWRTBase_IterPerExp(const Array<OneD, const NekDouble> &inarray, 
                                                      Array<OneD, NekDouble> &outarray);
                        
            virtual std::vector<LibUtilities::FieldDefinitionsSharedPtr> v_GetFieldDefinitions(void);
            
            virtual void v_GetFieldDefinitions(std::vector<LibUtilities::FieldDefinitionsSharedPtr> &fielddef);
            
            virtual void v_AppendFieldData(LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector<NekDouble> &fielddata);
            
            virtual void v_AppendFieldData(LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector<NekDouble> &fielddata, Array<OneD, NekDouble> &coeffs);
            
            virtual void v_ExtractDataToCoeffs(LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector<NekDouble> &fielddata, std::string &field, Array<OneD, NekDouble> &coeffs);
            
            virtual void v_ExtractCoeffsToCoeffs(
                                                 const boost::shared_ptr<ExpList> &fromExpList, const Array<OneD, const NekDouble> &fromCoeffs, Array<OneD, NekDouble> &toCoeffs);

            virtual void v_WriteVtkPieceData(std::ostream &outfile, int expansion,
                                             std::string var);

            virtual void v_PhysInterp1DScaled(const NekDouble scale, const Array<OneD, NekDouble> &inarray, Array<OneD, NekDouble> &outarray);

            virtual void v_PhysGalerkinProjection1DScaled(const NekDouble scale, const Array<OneD, NekDouble> &inarray, Array<OneD, NekDouble> &outarray);


            virtual void v_HomogeneousFwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                               Array<OneD, NekDouble> &outarray, 
                                               CoeffState coeffstate = eLocal,
                                               bool Shuff = true,
                                               bool UnShuff = true);
            
            virtual void v_HomogeneousBwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                               Array<OneD, NekDouble> &outarray, 
                                               CoeffState coeffstate = eLocal,
                                               bool Shuff = true,
                                               bool UnShuff = true);
            
            virtual void v_DealiasedProd(const Array<OneD, NekDouble> &inarray1,
                                         const Array<OneD, NekDouble> &inarray2,
                                         Array<OneD, NekDouble> &outarray, 
                                         CoeffState coeffstate = eLocal);
            
            virtual void v_PhysDeriv(const Array<OneD, const NekDouble> &inarray,
                                     Array<OneD, NekDouble> &out_d0,
                                     Array<OneD, NekDouble> &out_d1, 
                                     Array<OneD, NekDouble> &out_d2);
            
            virtual void v_PhysDeriv(Direction edir,
                                     const Array<OneD, const NekDouble> &inarray,
                                     Array<OneD, NekDouble> &out_d);
            
            virtual LibUtilities::TranspositionSharedPtr v_GetTransposition(void);

            virtual Array<OneD, const unsigned int> v_GetZIDs(void);
            
            virtual ExpListSharedPtr &v_GetPlane(int n)
            {
                return GetPlane(n);
            }
            
            virtual NekDouble v_GetHomoLen(void);
            
        private:
            
            //Padding operations variables
            bool m_dealiasing;
            int m_padsize;

            /// Spectral vanishing Viscosity coefficient for stabilisation 
            Array<OneD, NekDouble> m_specVanVisc;
        };
        
        inline void ExpListHomogeneous1D::HomogeneousFwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                                              Array<OneD, NekDouble> &outarray, 
                                                              CoeffState coeffstate,
                                                              bool Shuff,
                                                              bool UnShuff)
        {
            v_HomogeneousFwdTrans(inarray,outarray,coeffstate,Shuff,UnShuff);
        }
    
        inline void ExpListHomogeneous1D::HomogeneousBwdTrans(const Array<OneD, const NekDouble> &inarray, 
                                                              Array<OneD, NekDouble> &outarray, 
                                                              CoeffState coeffstate,
                                                              bool Shuff,
                                                              bool UnShuff)
        {
            v_HomogeneousBwdTrans(inarray,outarray,coeffstate,Shuff,UnShuff);
        }
        
        inline void ExpListHomogeneous1D::DealiasedProd(const Array<OneD, NekDouble> &inarray1,
                                                        const Array<OneD, NekDouble> &inarray2,
                                                        Array<OneD, NekDouble> &outarray, 
                                                        CoeffState coeffstate)
        {
            v_DealiasedProd(inarray1,inarray2,outarray,coeffstate);
        }
        
    } //end of namespace
} //end of namespace

#endif//EXPLISTHOMO1D_H

/**
* $Log: v $
*
**/