FilterEnergyBase.cpp

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///////////////////////////////////////////////////////////////////////////////
//
// File FilterEnergyBase.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// License for the specific language governing rights and limitations under
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Output kinetic energy and enstrophy.
//
///////////////////////////////////////////////////////////////////////////////

#include <iomanip>

#include <SolverUtils/Filters/FilterEnergyBase.h>

using namespace std;

namespace Nektar
{
namespace SolverUtils
{
FilterEnergyBase::FilterEnergyBase(
    const LibUtilities::SessionReaderSharedPtr &pSession,
    const ParamMap &pParams,
    const bool pConstDensity)
    : Filter        (pSession),
      m_index       (-1),
      m_homogeneous (false),
      m_planes      (),
      m_constDensity(pConstDensity)
{
    ParamMap::const_iterator it;
    std::string outName;

    // OutputFile
    it = pParams.find("OutputFile");
    if (it == pParams.end())
    {
        outName = m_session->GetSessionName();
    }
    else
    {
        ASSERTL0(it->second.length() > 0, "Missing parameter 'OutputFile'.");
        outName = it->second;
    }
    outName += ".eny";

    m_comm = pSession->GetComm();
    if (m_comm->GetRank() == 0)
    {
        m_outFile.open(outName.c_str());
        ASSERTL0(m_outFile.good(), "Unable to open: '" + outName + "'");
        m_outFile.setf(ios::scientific, ios::floatfield);
        m_outFile << "# Time                Kinetic energy        "
                  << "Enstrophy"
                  << endl
                  << "# ---------------------------------------------"
                  << "--------------"
                  << endl;
    }
    pSession->LoadParameter("LZ", m_homogeneousLength, 0.0);

    // OutputFrequency
    it = pParams.find("OutputFrequency");
    ASSERTL0(it != pParams.end(), "Missing parameter 'OutputFrequency'.");
    LibUtilities::Equation equ(m_session, it->second);
    m_outputFrequency = round(equ.Evaluate());
}

FilterEnergyBase::~FilterEnergyBase()
{

}

void FilterEnergyBase::v_Initialise(
    const Array<OneD, const MultiRegions::ExpListSharedPtr> &pFields,
    const NekDouble &time)
{
    m_index = -1;
    MultiRegions::ExpListSharedPtr areaField;

    ASSERTL0(pFields[0]->GetExpType() != MultiRegions::e3DH2D,
             "Homogeneous 2D expansion not supported"
             "for energy filter");

    if (pFields[0]->GetExpType() == MultiRegions::e3DH1D)
    {
        m_homogeneous = true;
    }

    // Calculate area/volume of domain.
    if (m_homogeneous)
    {
        m_planes  = pFields[0]->GetZIDs();
        areaField = pFields[0]->GetPlane(0);
    }
    else
    {
        areaField = pFields[0];
    }

    Array<OneD, NekDouble> inarray(areaField->GetNpoints(), 1.0);
    m_area = areaField->Integral(inarray);

    if (m_homogeneous)
    {
        m_area *= m_homogeneousLength;
    }

    // Output values at initial time.
    v_Update(pFields, time);
}

void FilterEnergyBase::v_Update(
    const Array<OneD, const MultiRegions::ExpListSharedPtr> &pFields,
    const NekDouble &time)
{
    int i, nPoints = pFields[0]->GetNpoints();

    m_index++;

    if (m_index % m_outputFrequency > 0)
    {
        return;
    }

    // Calculate kinetic energy.
    NekDouble Ek = 0.0;
    Array<OneD, NekDouble> tmp(nPoints, 0.0);
    Array<OneD, Array<OneD, NekDouble> > u(3);
    for (i = 0; i < 3; ++i)
    {
        u[i] = Array<OneD, NekDouble>(nPoints);

        v_GetVelocity(pFields, i, u[i]);

        if (m_homogeneous && pFields[i]->GetWaveSpace())
        {
            pFields[i]->HomogeneousBwdTrans(u[i], u[i]);
        }

        Vmath::Vvtvp(nPoints, u[i], 1, u[i], 1, tmp, 1, tmp, 1);
    }

    if (!m_constDensity)
    {
        Vmath::Vmul(nPoints, v_GetDensity(pFields), 1, tmp, 1, tmp, 1);
    }

    if (m_homogeneous)
    {
        Array<OneD, NekDouble> tmp2(nPoints, 0.0);
        pFields[0]->HomogeneousFwdTrans(tmp, tmp2);
        Ek = pFields[0]->GetPlane(0)->Integral(tmp2) * 2.0 * M_PI;
    }
    else
    {
        Ek = pFields[0]->Integral(tmp);
    }

    Ek /= 2.0 * m_area;

    if (m_comm->GetRank() == 0)
    {
        m_outFile << setw(17) << setprecision(8) << time
                  << setw(22) << setprecision(11) << Ek;
    }

    bool waveSpace[3] = {
        pFields[0]->GetWaveSpace(),
        pFields[1]->GetWaveSpace(),
        pFields[2]->GetWaveSpace()
    };

    if (m_homogeneous)
    {
        for (i = 0; i < 3; ++i)
        {
            pFields[i]->SetWaveSpace(false);
        }
    }

    // First calculate vorticity field.
    Array<OneD, NekDouble> tmp2(nPoints), tmp3(nPoints);
    Vmath::Zero(nPoints, tmp, 1);
    for (i = 0; i < 3; ++i)
    {
        int f1 = (i+2) % 3, c2 = f1;
        int c1 = (i+1) % 3, f2 = c1;
        pFields[f1]->PhysDeriv(c1, u[f1], tmp2);
        pFields[f2]->PhysDeriv(c2, u[f2], tmp3);
        Vmath::Vsub (nPoints, tmp2, 1, tmp3, 1, tmp2, 1);
        Vmath::Vvtvp(nPoints, tmp2, 1, tmp2, 1, tmp, 1, tmp, 1);
    }

    if (!m_constDensity)
    {
        Vmath::Vmul(nPoints, v_GetDensity(pFields), 1, tmp, 1, tmp, 1);
    }

    if (m_homogeneous)
    {
        for (i = 0; i < 3; ++i)
        {
            pFields[i]->SetWaveSpace(waveSpace[i]);
        }
        pFields[0]->HomogeneousFwdTrans(tmp, tmp);
        Ek = pFields[0]->GetPlane(0)->Integral(tmp) * 2 * M_PI;
    }
    else
    {
        Ek = pFields[0]->Integral(tmp);
    }

    Ek /= 2.0*m_area;

    if (m_comm->GetRank() == 0)
    {
        m_outFile << setw(22) << setprecision(11) << Ek << endl;
    }
}

void FilterEnergyBase::v_Finalise(
    const Array<OneD, const MultiRegions::ExpListSharedPtr> &pFields,
    const NekDouble &time)
{
    m_outFile.close();
}

bool FilterEnergyBase::v_IsTimeDependent()
{
    return true;
}

void FilterEnergyBase::v_GetVelocity(
    const Array<OneD, const MultiRegions::ExpListSharedPtr> &pFields,
    const int i,
    Array<OneD, NekDouble> &velocity)
{
    ASSERTL0(false, "Needs to implemented by subclass");
}

Array<OneD, NekDouble> FilterEnergyBase::v_GetDensity(
    const Array<OneD, const MultiRegions::ExpListSharedPtr> &pFields)
{
    ASSERTL0(false, "Needs to implemented by subclass");
    return Array<OneD, NekDouble>();
}
}
}