SplitFld.cpp

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#include <cstdio>
#include <cstdlib>
#include <LibUtilities/BasicUtils/SessionReader.h>
#include <MultiRegions/ExpList.h>
#include <MultiRegions/ContField1D.h>
#include <MultiRegions/ContField2D.h>
#include <MultiRegions/ContField3D.h>
#include <MultiRegions/ContField3DHomogeneous1D.h>
#include <MultiRegions/ContField3DHomogeneous2D.h>

using namespace std;
using namespace Nektar;

int main(int argc, char *argv[])
{

    void SetFields(SpatialDomains::MeshGraphSharedPtr &mesh,
        SpatialDomains::BoundaryConditionsSharedPtr& boundaryConditions,
        LibUtilities::SessionReaderSharedPtr &session,
        Array<OneD,MultiRegions::ExpListSharedPtr> &Exp,int nvariables);
         Array<OneD, int> GetReflectionIndex(Array<OneD,MultiRegions::ExpListSharedPtr> &Exp,
         int Ireg);

    if(argc != 3)
    {
        fprintf(stderr,"Usage: SplitFld  meshfile fieldfile\n");
        exit(1);
    }

    LibUtilities::SessionReaderSharedPtr vSession
            = LibUtilities::SessionReader::CreateInstance(argc, argv);


    //----------------------------------------------

    // Read in mesh from input file
    string meshfile(argv[argc-2]);
    SpatialDomains::MeshGraphSharedPtr graphShPt = SpatialDomains::MeshGraph::Read(vSession);//meshfile);
    //----------------------------------------------

    // Also read and store the boundary conditions
    SpatialDomains::BoundaryConditionsSharedPtr boundaryConditions;
    boundaryConditions = MemoryManager<SpatialDomains::BoundaryConditions>
                                        ::AllocateSharedPtr(vSession, graphShPt);
    SpatialDomains::BoundaryConditions bcs(vSession, graphShPt);
    //----------------------------------------------

    //----------------------------------------------
    // Import field file.
    string fieldfile(argv[argc-1]);
    vector<LibUtilities::FieldDefinitionsSharedPtr> fielddef;
    vector<vector<NekDouble> > fielddata;
    LibUtilities::Import(fieldfile,fielddef,fielddata);
    //----------------------------------------------

    // Define Expansion
    int nfields;
    nfields = fielddef[0]->m_fields.size();
    Array<OneD, MultiRegions::ExpListSharedPtr> Exp;
    Exp = Array<OneD, MultiRegions::ExpListSharedPtr>(nfields);

    std::string solvtype = vSession->GetSolverInfo("SOLVERTYPE");
    if(solvtype == "CoupledLinearisedNS" && vSession->DefinesSolverInfo("HOMOGENEOUS") )
    {

         SetFields(graphShPt,boundaryConditions,vSession,Exp,nfields-1);
     //decomment
         //nfields = nfields-1;
//start
         int lastfield = nfields-1;
         cout<<"Set pressure: "<<lastfield<<endl;
         int nplanes = fielddef[0]->m_numModes[2];
         const LibUtilities::PointsKey Pkey(nplanes,LibUtilities::ePolyEvenlySpaced);
         const LibUtilities::BasisKey  Bkey(fielddef[0]->m_basis[2],nplanes,Pkey);
         NekDouble lz = fielddef[0]->m_homogeneousLengths[0];
         MultiRegions::ExpList3DHomogeneous1DSharedPtr Exp3DH1;
         Exp3DH1 = MemoryManager<MultiRegions::ExpList3DHomogeneous1D>::AllocateSharedPtr(vSession,Bkey,lz,false,false,graphShPt,fielddef[0]->m_fields[0]);
         Exp[lastfield] = Exp3DH1;
//end
    }
    else
    {

         SetFields(graphShPt,boundaryConditions,vSession,Exp,nfields);
    }
    //----------------------------------------------

    //----------------------------------------------
    // Copy data from field file
    for(int j = 0; j < nfields; ++j)
    {
        for(int i = 0; i < fielddef.size(); ++i)
        {
            Exp[j]->ExtractDataToCoeffs(fielddef [i],
                                        fielddata[i],
                                        fielddef [i]->m_fields[j],
                                        Exp[j]->UpdateCoeffs());
        }
        Exp[j]->BwdTrans_IterPerExp(Exp[j]->GetCoeffs(),Exp[j]->UpdatePhys());
    }

    //----------------------------------------------


    // Write solution to file with additional computed fields
    string   fldfilename(argv[2]);
    string   out = fldfilename.substr(0, fldfilename.find_last_of("."));
    string   endfile("split.fld");


    //Array<OneD, Array<OneD, NekDouble> > fieldcoeffs(1);

    string outfile;
    string var;


    Array<OneD, Array<OneD, NekDouble> > fieldcoeffs(Exp.num_elements());
    //NB in case of homo fields you CANNOT use the BwdTrans
    //because the Im comp is set to 0
    for(int i = 0; i < Exp.num_elements(); ++i)
    {
        fieldcoeffs[i] = Exp[i]->UpdateCoeffs();
    }


     // copy Data into FieldData and set variable
    /*
      for(int g=0; g<Exp[0]->GetPlane(1)->GetNcoeffs(); g++)
      {
      cout<<"g="<<g<<"  coeff f0="<<Exp[lastfield]->GetPlane(0)->GetCoeff(g)<<" f1="<<Exp[lastfield]->GetPlane(1)->GetCoeff(g)<<endl;
      }
    */

     for(int j =0; j<nfields; j++)
     {
          outfile = out;
          std::vector<LibUtilities::FieldDefinitionsSharedPtr> FieldDef
              = Exp[j]->GetFieldDefinitions();
          std::vector<std::vector<NekDouble> > FieldData(FieldDef.size());
          //fieldcoeffs[j] = fields[j]->UpdateCoeffs();
          for(int i = 0; i < FieldDef.size(); ++i)
          {
               var = fielddef[i]->m_fields[j];
               // Could do a search here to find correct variable
               FieldDef[i]->m_fields.push_back(var);
               Exp[j]->AppendFieldData(FieldDef[i], FieldData[i],fieldcoeffs[j]);

          }
          outfile += "_"+var+"_"+endfile;
          LibUtilities::Write(outfile,FieldDef,FieldData);

      }

      //-----------------------------------------------

    return 0;
}




    // Define Expansion
        void SetFields(SpatialDomains::MeshGraphSharedPtr &mesh,
        SpatialDomains::BoundaryConditionsSharedPtr &boundaryConditions,
        LibUtilities::SessionReaderSharedPtr &session,
        Array<OneD,MultiRegions::ExpListSharedPtr> &Exp,int nvariables)
    {
        // Setting parameteres for homogenous problems
        //NekDouble LhomX;           ///< physical length in X direction (if homogeneous)
        NekDouble LhomY=0.0;           ///< physical length in Y direction (if homogeneous)
        NekDouble LhomZ=0.0;           ///< physical length in Z direction (if homogeneous)

        bool DeclareCoeffPhysArrays = true;
        //int npointsX;              ///< number of points in X direction (if homogeneous)
        int npointsY=0;              ///< number of points in Y direction (if homogeneous)
        int npointsZ=0;              ///< number of points in Z direction (if homogeneous)
        bool useFFT = false;
        bool deal = false;
        ///Parameter for homogeneous expansions
        enum HomogeneousType
        {
            eHomogeneous1D,
            eHomogeneous2D,
            eHomogeneous3D,
            eNotHomogeneous
        };

        enum HomogeneousType HomogeneousType = eNotHomogeneous;

        if(session->DefinesSolverInfo("HOMOGENEOUS"))
        {
            std::string HomoStr = session->GetSolverInfo("HOMOGENEOUS");
            //m_spacedim          = 3;

            if((HomoStr == "HOMOGENEOUS1D")||(HomoStr == "Homogeneous1D")||
               (HomoStr == "1D")||(HomoStr == "Homo1D"))
            {
                HomogeneousType = eHomogeneous1D;
                npointsZ        = session->GetParameter("HomModesZ");
                LhomZ           = session->GetParameter("LZ");
            }

            if((HomoStr == "HOMOGENEOUS2D")||(HomoStr == "Homogeneous2D")||
               (HomoStr == "2D")||(HomoStr == "Homo2D"))
            {
                HomogeneousType = eHomogeneous2D;
                npointsY        = session->GetParameter("HomModesY");
                LhomY           = session->GetParameter("LY");
                npointsZ        = session->GetParameter("HomModesZ");
                LhomZ           = session->GetParameter("LZ");
            }

            if((HomoStr == "HOMOGENEOUS3D")||(HomoStr == "Homogeneous3D")||
               (HomoStr == "3D")||(HomoStr == "Homo3D"))
            {
                HomogeneousType = eHomogeneous3D;
                //npointsX        = session->GetParameter("HomModesX");
                //LhomX           = session->GetParameter("LX");
                npointsY        = session->GetParameter("HomModesY");
                LhomY           = session->GetParameter("LY");
                npointsZ        = session->GetParameter("HomModesZ");
                LhomZ           = session->GetParameter("LZ");
            }

            if(session->DefinesSolverInfo("USEFFT"))
            {
                useFFT = true;
            }
        }

        int i;
        int expdim   = mesh->GetMeshDimension();
        //Exp= Array<OneD, MultiRegions::ExpListSharedPtr>(nvariables);
        // I can always have 3 variables in a 2D mesh (oech vel component i a function which can depend on 1-3 var)
        // Continuous Galerkin projection

            switch(expdim)
            {
                case 1:
                {
                    if(HomogeneousType == eHomogeneous2D)
                    {
                        const LibUtilities::PointsKey PkeyY(npointsY,LibUtilities::eFourierEvenlySpaced);
                        const LibUtilities::BasisKey  BkeyY(LibUtilities::eFourier,npointsY,PkeyY);
                        const LibUtilities::PointsKey PkeyZ(npointsZ,LibUtilities::eFourierEvenlySpaced);
                        const LibUtilities::BasisKey  BkeyZ(LibUtilities::eFourier,npointsZ,PkeyZ);

                        for(i = 0 ; i < nvariables; i++)
                        {
                            Exp[i] = MemoryManager<MultiRegions::ContField3DHomogeneous2D>
                                ::AllocateSharedPtr(session,BkeyY,BkeyZ,LhomY,LhomZ,useFFT,deal,mesh,session->GetVariable(i));
                        }
                    }
                    else
                    {
                        for(i = 0 ; i < nvariables; i++)
                        {
                            Exp[i] = MemoryManager<MultiRegions::ContField1D>
                                ::AllocateSharedPtr(session,mesh,session->GetVariable(i));
                        }
                    }

                    break;
                }
            case 2:
                {
                    if(HomogeneousType == eHomogeneous1D)
                    {
                        const LibUtilities::PointsKey PkeyZ(npointsZ,LibUtilities::eFourierEvenlySpaced);
                        const LibUtilities::BasisKey  BkeyZ(LibUtilities::eFourier,npointsZ,PkeyZ);
                        for(i = 0 ; i < nvariables; i++)
                        {
                            Exp[i] = MemoryManager<MultiRegions::ContField3DHomogeneous1D>
                                ::AllocateSharedPtr(session,BkeyZ,LhomZ,useFFT,deal,mesh,session->GetVariable(i));
                        }
                    }
                    else
                    {
                        i = 0;
                        MultiRegions::ContField2DSharedPtr firstfield;
                        firstfield = MemoryManager<MultiRegions::ContField2D>
                            ::AllocateSharedPtr(session,mesh,session->GetVariable(i),DeclareCoeffPhysArrays);

                        Exp[0] = firstfield;
                        for(i = 1 ; i < nvariables; i++)
                        {
                            Exp[i] = MemoryManager<MultiRegions::ContField2D>
                                ::AllocateSharedPtr(*firstfield,mesh,session->GetVariable(i),DeclareCoeffPhysArrays);
                        }
                    }

                    break;
                }
                case 3:
                    {
                        if(HomogeneousType == eHomogeneous3D)
                        {
                            ASSERTL0(false,"3D fully periodic problems not implemented yet");
                        }
                        else
                        {
                            i = 0;
                            MultiRegions::ContField3DSharedPtr firstfield =
                                MemoryManager<MultiRegions::ContField3D>
                                ::AllocateSharedPtr(session,mesh,session->GetVariable(i));

                            Exp[0] = firstfield;
                            for(i = 1 ; i < nvariables; i++)
                            {
                                Exp[i] = MemoryManager<MultiRegions::ContField3D>
                                    ::AllocateSharedPtr(*firstfield,mesh,session->GetVariable(i));
                            }
                        }
                        break;
                    }
            default:
                ASSERTL0(false,"Expansion dimension not recognised");
                break;
            }
        }