Here is a list of all class members with links to the classes they belong to:
- _ -
- __cmp__()
: CellMLToNektar.pycml.cellml_units
- __deepcopy__()
: CellMLToNektar.pycml.mathml
- __del__()
: CellMLToNektar.processors.UnitsConverter
, CellMLToNektar.pycml.cellml_model
- __delattr__()
: CellMLToNektar.pycml.element_base
- __eq__()
: CellMLToNektar.pycml.cellml_unit
- __expr
: CellMLToNektar.optimize.LinearityAnalyser
- __getattribute__()
: CellMLToNektar.cellml_metadata.RdfProcessor
- __hash__()
: CellMLToNektar.pycml.cellml_unit
, CellMLToNektar.pycml.cellml_units
, CellMLToNektar.pycml.cellml_variable
- __init__()
: CellMLToNektar.cellml_metadata.RdfProcessor
, CellMLToNektar.optimize.ExpressionMatcher.A
, CellMLToNektar.optimize.ExpressionMatcher.N
, CellMLToNektar.optimize.ExpressionMatcher.R
, CellMLToNektar.optimize.ExpressionMatcher.V
, CellMLToNektar.optimize.ExpressionMatcher.X
, CellMLToNektar.optimize.LookupTableAnalyser
, CellMLToNektar.optimize.LookupTableAnalyser.LUTState
, CellMLToNektar.optimize.RushLarsenAnalyser
, CellMLToNektar.processors.InterfaceGenerator
, CellMLToNektar.processors.ModelModifier
, CellMLToNektar.processors.UnitsConverter
, CellMLToNektar.pycml.cellml_component
, CellMLToNektar.pycml.cellml_model
, CellMLToNektar.pycml.cellml_unit
, CellMLToNektar.pycml.cellml_units
, CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.comment_base
, CellMLToNektar.pycml.element_base
, CellMLToNektar.pycml.mathml
, CellMLToNektar.pycml.mathml_apply
, CellMLToNektar.pycml.mathml_ci
, CellMLToNektar.pycml.mathml_cn
, CellMLToNektar.pycml.mathml_constructor
, CellMLToNektar.pycml.mathml_math
, CellMLToNektar.pycml.mathml_piecewise
, CellMLToNektar.pycml.mathml_plus
, CellMLToNektar.pycml.MathsError
, CellMLToNektar.pycml.UnitsError
, CellMLToNektar.pycml.UnitsSet
, CellMLToNektar.translators.CellMLTranslator
, CellMLToNektar.translators.ConfigurationStore
, CellMLToNektar.translators.SolverInfo
, CellMLToNektar.utilities.Colourable
, CellMLToNektar.utilities.NotifyHandler
, CellMLToNektar.utilities.OnlyTheseSourcesFilter
, CellMLToNektar.utilities.Sentinel
, CellMLToNektar.utilities.unitary_iterator
, CellMLToNektar.validator.CellMLValidator
, CellMLToNektar.validator.LxmlRelaxngValidator
, CellMLToNektar.validator.RvpRelaxngValidator
, CellMLToNektar.validator.ValidatorError
- __iter__()
: CellMLToNektar.pycml.comment_base
, CellMLToNektar.utilities.unitary_iterator
- __ne__()
: CellMLToNektar.pycml.cellml_unit
- __new__()
: CellMLToNektar.pycml.UnitsSet
- __nonzero__()
: CellMLToNektar.utilities.Sentinel
- __repr__()
: CellMLToNektar.pycml.cellml_units
, CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.mathml
- __setattr__()
: CellMLToNektar.pycml.element_base
- __sources
: CellMLToNektar.utilities.OnlyTheseSourcesFilter
- __str__()
: CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.MathsError
, CellMLToNektar.validator.ValidatorError
- __unicode__()
: CellMLToNektar.pycml.MathsError
, CellMLToNektar.pycml.UnitsError
- _ab_pattern
: CellMLToNektar.optimize.RushLarsenAnalyser
- _add_all_odes_to_interface()
: CellMLToNektar.processors.InterfaceGenerator
- _add_child_component()
: CellMLToNektar.pycml.cellml_component
- _add_component()
: CellMLToNektar.pycml.cellml_model
- _add_dependency()
: CellMLToNektar.pycml.cellml_variable
- _add_ode_dependency()
: CellMLToNektar.pycml.cellml_variable
- _add_rdf_element()
: CellMLToNektar.cellml_metadata.RdfProcessor
- _add_sorted_assignment()
: CellMLToNektar.pycml.cellml_model
- _add_source()
: CellMLToNektar.pycml.UnitsSet
- _add_units_conversion()
: CellMLToNektar.pycml.mathml_units_mixin
- _add_units_obj()
: CellMLToNektar.pycml.cellml_model
- _add_variable()
: CellMLToNektar.pycml.cellml_component
, CellMLToNektar.pycml.cellml_model
- _add_variable_links()
: CellMLToNektar.translators.SolverInfo
- _alpha
: CellMLToNektar.optimize.RushLarsenAnalyser
- _alt_ab_pattern
: CellMLToNektar.optimize.RushLarsenAnalyser
- _alt_ti_pattern
: CellMLToNektar.optimize.RushLarsenAnalyser
- _apply_special_conversion_for_nested_expr()
: CellMLToNektar.processors.UnitsConverter
- _beta
: CellMLToNektar.optimize.RushLarsenAnalyser
- _build_units_dictionary()
: CellMLToNektar.pycml.cellml_component
, CellMLToNektar.pycml.cellml_model
- _check_assigned_vars()
: CellMLToNektar.pycml.cellml_model
- _check_cellml_subset()
: CellMLToNektar.pycml.cellml_model
- _check_connection_units()
: CellMLToNektar.pycml.cellml_model
- _check_dimensional_consistency()
: CellMLToNektar.pycml.cellml_model
- _check_expr()
: CellMLToNektar.optimize.LinearityAnalyser
- _check_maths_name_references()
: CellMLToNektar.pycml.cellml_model
- _check_retargetting()
: CellMLToNektar.optimize.PartialEvaluator
- _check_special_conversion()
: CellMLToNektar.processors.UnitsConverter
- _check_state_var_units_conversions()
: CellMLToNektar.translators.SolverInfo
- _check_unit_cycles()
: CellMLToNektar.pycml.cellml_model
- _check_var()
: CellMLToNektar.optimize.RushLarsenAnalyser
- _check_var_def()
: CellMLToNektar.translators.ConfigurationStore
- _check_variable_mappings()
: CellMLToNektar.pycml.cellml_model
- _check_variable_units_exist()
: CellMLToNektar.pycml.cellml_model
- _classify_variables()
: CellMLToNektar.pycml.cellml_model
- _cleanup_logger()
: CellMLToNektar.processors.UnitsConverter
- _clear_hierarchy()
: CellMLToNektar.pycml.cellml_component
- _clear_model_caches()
: CellMLToNektar.processors.ModelModifier
- _clone()
: CellMLToNektar.optimize.LinearityAnalyser
- _cml_assignments
: CellMLToNektar.pycml.cellml_model
- _cml_assigns_to
: CellMLToNektar.pycml.mathml_apply
- _cml_binding_time
: CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.mathml_apply
, CellMLToNektar.pycml.mathml_piecewise
- _cml_children
: CellMLToNektar.pycml.cellml_component
- _cml_colour
: CellMLToNektar.utilities.Colourable
- _cml_component
: CellMLToNektar.pycml.mathml
- _cml_components
: CellMLToNektar.pycml.cellml_model
- _cml_conversions_needed
: CellMLToNektar.pycml.cellml_model
- _cml_created_by_pe
: CellMLToNektar.pycml.cellml_component
- _cml_depends_on
: CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.mathml_apply
- _cml_depends_on_ode
: CellMLToNektar.pycml.cellml_variable
- _cml_expanded
: CellMLToNektar.pycml.cellml_units
- _cml_generated
: CellMLToNektar.pycml.cellml_units
- _cml_hash
: CellMLToNektar.pycml.cellml_units
- _cml_hash_tup
: CellMLToNektar.pycml.cellml_units
- _cml_model
: CellMLToNektar.pycml.mathml
- _cml_ode_has_free_var_on_rhs
: CellMLToNektar.pycml.mathml_apply
- _cml_parents
: CellMLToNektar.pycml.cellml_component
- _cml_quotients
: CellMLToNektar.pycml.cellml_units
- _cml_saved_bt
: CellMLToNektar.pycml.cellml_variable
- _cml_simplified
: CellMLToNektar.pycml.cellml_units
- _cml_sorting_variables_stack
: CellMLToNektar.pycml.cellml_model
- _cml_source_expr_for_clone
: CellMLToNektar.pycml.mathml
- _cml_source_var
: CellMLToNektar.pycml.cellml_variable
- _cml_standard_units
: CellMLToNektar.pycml.cellml_model
- _cml_units
: CellMLToNektar.pycml.cellml_component
, CellMLToNektar.pycml.cellml_model
, CellMLToNektar.pycml.mathml_apply
, CellMLToNektar.pycml.mathml_ci
, CellMLToNektar.pycml.mathml_cn
, CellMLToNektar.pycml.mathml_piecewise
, CellMLToNektar.pycml.mathml_units_mixin_container
, CellMLToNektar.pycml.mathml_units_mixin_tokens
- _cml_units_map
: CellMLToNektar.pycml.cellml_model
- _cml_units_obj
: CellMLToNektar.pycml.cellml_unit
- _cml_usage_count
: CellMLToNektar.pycml.cellml_variable
- _cml_validation_errors
: CellMLToNektar.pycml.cellml_model
- _cml_validation_warnings
: CellMLToNektar.pycml.cellml_model
- _cml_value
: CellMLToNektar.pycml.cellml_variable
- _cml_var_type
: CellMLToNektar.pycml.cellml_variable
- _cml_variable
: CellMLToNektar.pycml.mathml_ci
- _cml_variables
: CellMLToNektar.pycml.cellml_model
- _component
: CellMLToNektar.translators.SolverInfo
- _conv
: CellMLToNektar.optimize.RushLarsenAnalyser
- _convert_initial_value()
: CellMLToNektar.processors.ModelModifier
- _converted_mappings
: CellMLToNektar.processors.UnitsConverter
- _create_connection_element()
: CellMLToNektar.processors.ModelModifier
- _create_new_store()
: CellMLToNektar.cellml_metadata.RdfProcessor
- _create_var_def()
: CellMLToNektar.translators.ConfigurationStore
- _debug()
: CellMLToNektar.cellml_metadata.RdfProcessor
, CellMLToNektar.optimize.PartialEvaluator
- _decrement_usage_count()
: CellMLToNektar.pycml.cellml_variable
- _del_component()
: CellMLToNektar.pycml.cellml_model
- _del_variable()
: CellMLToNektar.pycml.cellml_component
, CellMLToNektar.pycml.cellml_model
- _describe_expr()
: CellMLToNektar.optimize.PartialEvaluator
- _determine_duplicate_tables()
: CellMLToNektar.optimize.LookupTableAnalyser
- _determine_unneeded_tables()
: CellMLToNektar.optimize.LookupTableAnalyser
- _do_reduce_eval_loop()
: CellMLToNektar.optimize.PartialEvaluator
- _dt
: CellMLToNektar.translators.SolverInfo
- _ensure_units_exist()
: CellMLToNektar.pycml.mathml
- _eval_self()
: CellMLToNektar.pycml.mathml_constructor
- _expr_lhs()
: CellMLToNektar.optimize.PartialEvaluator
- _expression
: CellMLToNektar.pycml.UnitsSet
- _find_common_tail()
: CellMLToNektar.processors.ModelModifier
- _find_connection_element()
: CellMLToNektar.processors.ModelModifier
- _find_or_create_variable()
: CellMLToNektar.processors.ModelModifier
- _find_tables()
: CellMLToNektar.optimize.LookupTableAnalyser
- _find_transmembrane_currents_from_voltage_ode()
: CellMLToNektar.translators.ConfigurationStore
- _find_var()
: CellMLToNektar.translators.ConfigurationStore
- _find_variable()
: CellMLToNektar.translators.ConfigurationStore
- _fix_jac_var_name()
: CellMLToNektar.translators.SolverInfo
- _generate_message()
: CellMLToNektar.pycml.MathsError
- _get_assignment_exprs()
: CellMLToNektar.optimize.PartialEvaluator
- _get_binding_time()
: CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.mathml_and
, CellMLToNektar.pycml.mathml_apply
, CellMLToNektar.pycml.mathml_ci
, CellMLToNektar.pycml.mathml_cn
, CellMLToNektar.pycml.mathml_diff
, CellMLToNektar.pycml.mathml_eq
, CellMLToNektar.pycml.mathml_or
, CellMLToNektar.pycml.mathml_piecewise
- _get_element_binding_time()
: CellMLToNektar.pycml.mathml_constructor
- _get_element_units()
: CellMLToNektar.pycml.mathml_constructor
- _get_operand_units()
: CellMLToNektar.pycml.mathml_apply
- _get_rhs()
: CellMLToNektar.optimize.LinearityAnalyser
- _get_sources()
: CellMLToNektar.pycml.UnitsSet
- _get_special_component()
: CellMLToNektar.translators.SolverInfo
- _get_special_variable()
: CellMLToNektar.translators.SolverInfo
- _get_units_obj()
: CellMLToNektar.pycml.cellml_model
- _get_units_object()
: CellMLToNektar.processors.ModelModifier
- _get_variable()
: CellMLToNektar.translators.SolverInfo
- _has_child_components()
: CellMLToNektar.pycml.cellml_component
- _hash_tup()
: CellMLToNektar.pycml.cellml_unit
- _hash_tuple()
: CellMLToNektar.pycml.cellml_units
- _inf
: CellMLToNektar.optimize.RushLarsenAnalyser
- _initializing
: CellMLToNektar.cellml_metadata.RdfProcessor
- _interface_component
: CellMLToNektar.processors.InterfaceGenerator
- _interface_component_name
: CellMLToNektar.processors.InterfaceGenerator
- _is_new_units_obj()
: CellMLToNektar.pycml.cellml_model
- _is_qualifier()
: CellMLToNektar.pycml.mathml_apply
- _is_source_of()
: CellMLToNektar.optimize.PartialEvaluator
- _is_top_level()
: CellMLToNektar.pycml.mathml_eq
- _jac_temp_re
: CellMLToNektar.translators.SolverInfo
- _last_method_access
: CellMLToNektar.CellMLToNektarTranslator.CellMLToNektarTranslator
- _load_ontology()
: CellMLToNektar.cellml_metadata.RdfProcessor
- _log_handler
: CellMLToNektar.processors.UnitsConverter
- _LT_DEFAULTS
: CellMLToNektar.optimize.LookupTableAnalyser
- _main_output_to_subsidiary
: CellMLToNektar.translators.CellMLTranslator
- _make_apply()
: CellMLToNektar.optimize.LinearityAnalyser
- _make_connection()
: CellMLToNektar.processors.ModelModifier
- _metadata_names
: CellMLToNektar.cellml_metadata.RdfProcessor
- _model
: CellMLToNektar.translators.SolverInfo
- _models
: CellMLToNektar.cellml_metadata.RdfProcessor
- _module
: CellMLToNektar.cellml_metadata.RdfProcessor
- _order_variables()
: CellMLToNektar.pycml.cellml_model
- _original_out
: CellMLToNektar.translators.CellMLTranslator
- _parent_path()
: CellMLToNektar.processors.ModelModifier
- _parse_Cm()
: CellMLToNektar.translators.ConfigurationStore
- _parse_currents()
: CellMLToNektar.translators.ConfigurationStore
- _parse_lookup_tables()
: CellMLToNektar.translators.ConfigurationStore
- _parse_var()
: CellMLToNektar.translators.ConfigurationStore
- _parse_Vm()
: CellMLToNektar.translators.ConfigurationStore
- _PeriodicEntity()
: Nektar::MultiRegions::_PeriodicEntity
- _process_ci_elts()
: CellMLToNektar.optimize.PartialEvaluator
, CellMLToNektar.translators.ConfigurationStore
- _process_mathematics()
: CellMLToNektar.translators.SolverInfo
- _process_operator()
: CellMLToNektar.processors.ModelModifier
- _rearrange_expr()
: CellMLToNektar.optimize.LinearityAnalyser
- _reduce()
: CellMLToNektar.pycml.cellml_variable
, CellMLToNektar.pycml.mathml_apply
, CellMLToNektar.pycml.mathml_ci
, CellMLToNektar.pycml.mathml_cn
, CellMLToNektar.pycml.mathml_diff
, CellMLToNektar.pycml.mathml_divide
, CellMLToNektar.pycml.mathml_eq
, CellMLToNektar.pycml.mathml_piecewise
, CellMLToNektar.pycml.mathml_power
, CellMLToNektar.pycml.reduce_commutative_nary
- _reduce_elt()
: CellMLToNektar.pycml.mathml_constructor
- _reduce_evaluate_expression()
: CellMLToNektar.optimize.PartialEvaluator
- _remove_assignment()
: CellMLToNektar.pycml.cellml_model
- _rename()
: CellMLToNektar.pycml.mathml_ci
- _rename_var()
: CellMLToNektar.optimize.PartialEvaluator
- _report_exception()
: CellMLToNektar.pycml.cellml_model
- _rvp_pipe
: CellMLToNektar.validator.RvpRelaxngValidator
- _rvpout
: CellMLToNektar.validator.RvpRelaxngValidator
- _serialize()
: CellMLToNektar.cellml_metadata.RdfProcessor
- _set_binding_time()
: CellMLToNektar.pycml.cellml_variable
- _set_element_in_units()
: CellMLToNektar.pycml.mathml_units_mixin
- _set_in_units()
: CellMLToNektar.pycml.mathml_apply
, CellMLToNektar.pycml.mathml_eq
, CellMLToNektar.pycml.mathml_piecewise
, CellMLToNektar.pycml.mathml_power
, CellMLToNektar.pycml.mathml_root
, CellMLToNektar.pycml.mathml_units_mixin_choose_nearest
, CellMLToNektar.pycml.mathml_units_mixin_container
, CellMLToNektar.pycml.mathml_units_mixin_equalise_operands
, CellMLToNektar.pycml.mathml_units_mixin_set_operands
, CellMLToNektar.pycml.mathml_units_mixin_tokens
- _set_lut_defaults()
: CellMLToNektar.translators.ConfigurationStore
- _set_parent_component()
: CellMLToNektar.pycml.cellml_component
- _set_source_variable()
: CellMLToNektar.pycml.cellml_variable
- _set_type()
: CellMLToNektar.pycml.cellml_variable
- _set_units_element()
: CellMLToNektar.pycml.cellml_unit
- _set_var_types()
: CellMLToNektar.pycml.mathml_diff
- _set_variable_obj()
: CellMLToNektar.pycml.mathml_ci
- _setup_logger()
: CellMLToNektar.processors.UnitsConverter
- _show_xml_context_only
: CellMLToNektar.pycml.MathsError
- _solver_info
: CellMLToNektar.translators.SolverInfo
- _sources
: CellMLToNektar.pycml.UnitsSet
- _split_ode()
: CellMLToNektar.processors.InterfaceGenerator
- _stimulus_names
: CellMLToNektar.cellml_metadata.RdfProcessor
- _tau
: CellMLToNektar.optimize.RushLarsenAnalyser
- _tf
: CellMLToNektar.utilities.Sentinel
- _ti_pattern
: CellMLToNektar.optimize.RushLarsenAnalyser
- _transfer_lut()
: CellMLToNektar.optimize.LinearityAnalyser
- _transform_derivative_on_rhs()
: CellMLToNektar.processors.InterfaceGenerator
- _transform_derivatives_on_rhs()
: CellMLToNektar.processors.InterfaceGenerator
- _tree_complexity()
: CellMLToNektar.pycml.mathml_constructor
- _uniquify_name()
: CellMLToNektar.processors.ModelModifier
- _uniquify_var_name()
: CellMLToNektar.processors.ModelModifier
- _units_converter
: CellMLToNektar.processors.ModelModifier
- _unset_binding_time()
: CellMLToNektar.pycml.cellml_variable
- _unset_cached_links()
: CellMLToNektar.pycml.mathml
, CellMLToNektar.pycml.mathml_ci
- _update_connections()
: CellMLToNektar.processors.ModelModifier
- _update_ode_dependency()
: CellMLToNektar.pycml.cellml_variable
- _update_usage_counts()
: CellMLToNektar.pycml.mathml_constructor
- _used()
: CellMLToNektar.pycml.cellml_variable
- _validate_component_hierarchies()
: CellMLToNektar.pycml.cellml_model
- _validate_connection()
: CellMLToNektar.pycml.cellml_model
- _validator
: CellMLToNektar.validator.LxmlRelaxngValidator
- _var
: CellMLToNektar.optimize.RushLarsenAnalyser
- _vars_in()
: CellMLToNektar.translators.CellMLTranslator
- _ws
: CellMLToNektar.validator.RvpRelaxngValidator