ContField3DHomogeneous1D.cpp

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//////////////////////////////////////////////////////////////////////////////
//
// File ContField3DHomogeneous1D.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Field definition for 3D domain with boundary
// conditions and a 1D homogeneous direction
//
///////////////////////////////////////////////////////////////////////////////
 
#include <MultiRegions/ContField.h>
#include <MultiRegions/ContField3DHomogeneous1D.h>
 
namespace Nektar
{
namespace MultiRegions
{
 
ContField3DHomogeneous1D::ContField3DHomogeneous1D(void)
    : DisContField3DHomogeneous1D()
{
}
 
ContField3DHomogeneous1D::ContField3DHomogeneous1D(
    const ContField3DHomogeneous1D &In)
    : DisContField3DHomogeneous1D(In, false)
{
 
    bool False = false;
    ContFieldSharedPtr zero_plane =
        std::dynamic_pointer_cast<ContField>(In.m_planes[0]);
 
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n] =
            MemoryManager<ContField>::AllocateSharedPtr(*zero_plane, False);
    }
 
    SetCoeffPhys();
}
 
ContField3DHomogeneous1D::ContField3DHomogeneous1D(
    const ContField3DHomogeneous1D &In,
    const SpatialDomains::MeshGraphSharedPtr &graph2D,
    const std::string &variable)
    : DisContField3DHomogeneous1D(In, false)
{
    ContFieldSharedPtr zero_plane_old =
        std::dynamic_pointer_cast<ContField>(In.m_planes[0]);
 
    ContFieldSharedPtr zero_plane = MemoryManager<ContField>::AllocateSharedPtr(
        *zero_plane_old, graph2D, variable);
 
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n] = MemoryManager<ContField>::AllocateSharedPtr(
            *zero_plane, graph2D, variable);
    }
 
    SetCoeffPhys();
 
    if (variable.compare("DefaultVar") != 0)
    {
        SpatialDomains::BoundaryConditions bcs(m_session, graph2D);
        SetupBoundaryConditions(m_homogeneousBasis->GetBasisKey(), m_lhom, bcs,
                                variable);
    }
}
 
ContField3DHomogeneous1D::~ContField3DHomogeneous1D()
{
}
 
ContField3DHomogeneous1D::ContField3DHomogeneous1D(
    const LibUtilities::SessionReaderSharedPtr &pSession,
    const LibUtilities::BasisKey &HomoBasis, const NekDouble lhom,
    const bool useFFT, const bool dealiasing,
    const SpatialDomains::MeshGraphSharedPtr &graph2D,
    const std::string &variable, const bool CheckIfSingularSystem,
    const Collections::ImplementationType ImpType)
    : DisContField3DHomogeneous1D(pSession, HomoBasis, lhom, useFFT, dealiasing)
{
    int i, n, nel;
    ContFieldSharedPtr plane_zero;
    ContFieldSharedPtr plane_two;
 
    SpatialDomains::BoundaryConditions bcs(m_session, graph2D);
    m_graph = graph2D;
 
    // Plane zero (k=0 - cos) - singularaty check required for Poisson
    // problems
    plane_zero = MemoryManager<ContField>::AllocateSharedPtr(
        pSession, graph2D, variable, false, CheckIfSingularSystem, ImpType);
 
    plane_two = MemoryManager<ContField>::AllocateSharedPtr(
        pSession, graph2D, variable, false, false, ImpType);
 
    m_exp = MemoryManager<LocalRegions::ExpansionVector>::AllocateSharedPtr();
 
    for (n = 0; n < m_planes.size(); ++n)
    {
        // Plane zero and one (k=0 - cos and sin) - singularaty check
        // required for Poisson problems
        if (m_transposition->GetK(n) == 0)
        {
            m_planes[n] = MemoryManager<ContField>::AllocateSharedPtr(
                *plane_zero, graph2D, variable, false, CheckIfSingularSystem);
        }
        else
        {
            // For k > 0 singularty check not required anymore -
            // creating another ContField to avoid Assembly Map copy
            // TODO: We may want to deal with it in a more efficient
            // way in the future.
            m_planes[n] = MemoryManager<ContField>::AllocateSharedPtr(
                *plane_two, graph2D, variable, false, false);
        }
 
        nel = m_planes[n]->GetExpSize();
 
        for (i = 0; i < nel; ++i)
        {
            (*m_exp).push_back(m_planes[n]->GetExp(i));
        }
    }
 
    nel = GetExpSize();
 
    SetCoeffPhys();
 
    // Do not set up BCs if default variable
    if (variable.compare("DefaultVar") != 0)
    {
        SetupBoundaryConditions(HomoBasis, lhom, bcs, variable);
    }
}
 
void ContField3DHomogeneous1D::v_ImposeDirichletConditions(
    Array<OneD, NekDouble> &outarray)
{
    Array<OneD, NekDouble> tmp;
    int ncoeffs = m_planes[0]->GetNcoeffs();
 
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->ImposeDirichletConditions(tmp = outarray + n * ncoeffs);
    }
}
 
void ContField3DHomogeneous1D::v_FillBndCondFromField(void)
{
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->FillBndCondFromField();
    }
}
 
void ContField3DHomogeneous1D::v_FillBndCondFromField(const int nreg)
{
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->FillBndCondFromField(nreg);
    }
}
 
/**
 *
 */
void ContField3DHomogeneous1D::v_LocalToGlobal(bool useComm)
{
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->LocalToGlobal(useComm);
    }
}
 
/**
 *
 */
void ContField3DHomogeneous1D::v_GlobalToLocal(void)
{
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->GlobalToLocal();
    }
}
 
/**
 *
 */
void ContField3DHomogeneous1D::v_SmoothField(Array<OneD, NekDouble> &field)
{
    int cnt = 0;
    Array<OneD, NekDouble> tmp;
 
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->SmoothField(tmp = field + cnt);
 
        cnt += m_planes[n]->GetTotPoints();
    }
}
 
void ContField3DHomogeneous1D::v_HelmSolve(
    const Array<OneD, const NekDouble> &inarray,
    Array<OneD, NekDouble> &outarray, const StdRegions::ConstFactorMap &factors,
    const StdRegions::VarCoeffMap &varcoeff,
    const MultiRegions::VarFactorsMap &varfactors,
    const Array<OneD, const NekDouble> &dirForcing, const bool PhysSpaceForcing)
{
 
    int n;
    int cnt  = 0;
    int cnt1 = 0;
    NekDouble beta;
    StdRegions::ConstFactorMap new_factors;
 
    Array<OneD, NekDouble> e_out;
    Array<OneD, NekDouble> fce(inarray.size());
    Array<OneD, const NekDouble> wfce;
 
    // Fourier transform forcing function
    if (m_WaveSpace)
    {
        fce = inarray;
    }
    else
    {
        HomogeneousFwdTrans(inarray, fce);
    }
 
    bool smode = false;
 
    if (m_homogeneousBasis->GetBasisType() ==
            LibUtilities::eFourierHalfModeRe ||
        m_homogeneousBasis->GetBasisType() == LibUtilities::eFourierHalfModeIm)
    {
        smode = true;
    }
 
    if (factors.count(StdRegions::eFactorGJP))
    {
        ContFieldSharedPtr zero_plane =
            std::dynamic_pointer_cast<ContField>(m_planes[0]);
        for (n = 1; n < m_planes.size(); ++n)
        {
            std::dynamic_pointer_cast<ContField>(m_planes[n])
                ->SetGJPForcing(zero_plane->GetGJPForcing());
        }
    }
 
    for (n = 0; n < m_planes.size(); ++n)
    {
        if (n != 1 || m_transposition->GetK(n) != 0 || smode)
        {
 
            beta        = 2 * M_PI * (m_transposition->GetK(n)) / m_lhom;
            new_factors = factors;
            // add in Homogeneous Fourier direction and SVV if turned on
            new_factors[StdRegions::eFactorLambda] +=
                beta * beta * (1 + GetSpecVanVisc(n));
 
            wfce = (PhysSpaceForcing) ? fce + cnt : fce + cnt1;
            m_planes[n]->HelmSolve(wfce, e_out = outarray + cnt1, new_factors,
                                   varcoeff, varfactors, dirForcing,
                                   PhysSpaceForcing);
        }
 
        cnt += m_planes[n]->GetTotPoints();
        cnt1 += m_planes[n]->GetNcoeffs();
    }
}
 
/**
 * Reset the GlobalLinSys Manager
 */
void ContField3DHomogeneous1D::v_ClearGlobalLinSysManager(void)
{
    for (int n = 0; n < m_planes.size(); ++n)
    {
        m_planes[n]->ClearGlobalLinSysManager();
    }
}
 
} // namespace MultiRegions
} // namespace Nektar