StdSegExp.cpp

Go to the documentation of this file.

///////////////////////////////////////////////////////////////////////////////
//
// File: StdSegExp.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Routines within Standard Segment Expansions
//
///////////////////////////////////////////////////////////////////////////////
 
#include <boost/core/ignore_unused.hpp>
 
#include <LibUtilities/Foundations/InterpCoeff.h>
#include <StdRegions/StdSegExp.h>
 
using namespace std;
 
namespace Nektar
{
namespace StdRegions
{
/** \brief defult constructor */
StdSegExp::StdSegExp()
{
}
 
/** \brief Constructor using BasisKey class for quadrature points and
 *  order definition
 *
 *  \param Ba BasisKey class definition containing order and quadrature
 *  points.
 */
StdSegExp::StdSegExp(const LibUtilities::BasisKey &Ba)
    : StdExpansion(Ba.GetNumModes(), 1, Ba),
      StdExpansion1D(Ba.GetNumModes(), Ba)
{
}
 
/** \brief Copy Constructor */
StdSegExp::StdSegExp(const StdSegExp &T) : StdExpansion(T), StdExpansion1D(T)
{
}
 
/** \brief Destructor */
StdSegExp::~StdSegExp()
{
}
 
/** \brief Return Shape of region, using  ShapeType enum list.
 *  i.e. Segment
 */
LibUtilities::ShapeType StdSegExp::v_DetShapeType() const
{
    return LibUtilities::eSegment;
}
 
bool StdSegExp::v_IsBoundaryInteriorExpansion() const
{
 
    bool returnval = false;
 
    if (m_base[0]->GetBasisType() == LibUtilities::eModified_A)
    {
        returnval = true;
    }
 
    if (m_base[0]->GetBasisType() == LibUtilities::eGLL_Lagrange)
    {
        returnval = true;
    }
 
    return returnval;
}
 
//---------------------------------------------------------------------
// Integration Methods
//---------------------------------------------------------------------
 
/** \brief Integrate the physical point list \a inarray over region
 *  and return the value
 *
 *  \param inarray definition of function to be integrated evauluated at
 *  quadrature point of expansion.
 *  \return returns \f$\int^1_{-1} u(\xi_1)d \xi_1 \f$ where \f$inarray[i]
 *  = u(\xi_{1i}) \f$
 */
NekDouble StdSegExp::v_Integral(const Array<OneD, const NekDouble> &inarray)
{
    NekDouble Int = 0.0;
    int nquad0    = m_base[0]->GetNumPoints();
    Array<OneD, NekDouble> tmp(nquad0);
    Array<OneD, const NekDouble> z  = m_base[0]->GetZ();
    Array<OneD, const NekDouble> w0 = m_base[0]->GetW();
 
    // multiply by integration constants
    Vmath::Vmul(nquad0, inarray, 1, w0, 1, tmp, 1);
 
    Int = Vmath::Vsum(nquad0, tmp, 1);
 
    return Int;
}
 
//---------------------------------------------------------------------
// Differentiation Methods
//---------------------------------------------------------------------
 
/** \brief Evaluate the derivative \f$ d/d{\xi_1} \f$ at the physical
 *  quadrature points given by \a inarray and return in \a outarray.
 *
 *  This is a wrapper around StdExpansion1D::Tensor_Deriv
 *  \param inarray array of a function evaluated at the quadrature points
 *  \param  outarray the resulting array of the derivative \f$
 *  du/d_{\xi_1}|_{\xi_{1i}} \f$ will be stored in the array \a outarra
 */
 
void StdSegExp::v_PhysDeriv(const Array<OneD, const NekDouble> &inarray,
                            Array<OneD, NekDouble> &out_d0,
                            Array<OneD, NekDouble> &out_d1,
                            Array<OneD, NekDouble> &out_d2)
{
    boost::ignore_unused(out_d1, out_d2);
    PhysTensorDeriv(inarray, out_d0);
}
 
void StdSegExp::v_PhysDeriv(const int dir,
                            const Array<OneD, const NekDouble> &inarray,
                            Array<OneD, NekDouble> &outarray)
{
    boost::ignore_unused(dir);
    ASSERTL1(dir == 0, "input dir is out of range");
    PhysTensorDeriv(inarray, outarray);
    // PhysDeriv(inarray, outarray);
}
 
void StdSegExp::v_StdPhysDeriv(const Array<OneD, const NekDouble> &inarray,
                               Array<OneD, NekDouble> &out_d0,
                               Array<OneD, NekDouble> &out_d1,
                               Array<OneD, NekDouble> &out_d2)
{
    boost::ignore_unused(out_d1, out_d2);
    PhysTensorDeriv(inarray, out_d0);
    // PhysDeriv(inarray, out_d0);
}
 
void StdSegExp::v_StdPhysDeriv(const int dir,
                               const Array<OneD, const NekDouble> &inarray,
                               Array<OneD, NekDouble> &outarray)
{
    boost::ignore_unused(dir);
    ASSERTL1(dir == 0, "input dir is out of range");
    PhysTensorDeriv(inarray, outarray);
    // PhysDeriv(inarray, outarray);
}
 
//---------------------------------------------------------------------
// Transforms
//---------------------------------------------------------------------
 
/** \brief Backward transform from coefficient space given
 *  in \a inarray and evaluate at the physical quadrature
 *  points \a outarray
 *
 *  Operation can be evaluated as \f$ u(\xi_{1i}) =
 *  \sum_{p=0}^{order-1} \hat{u}_p \phi_p(\xi_{1i}) \f$ or equivalently
 *  \f$ {\bf u} = {\bf B}^T {\bf \hat{u}} \f$ where
 *  \f${\bf B}[i][j] = \phi_i(\xi_{1j}), \mbox{\_coeffs}[p] = {\bf
 *  \hat{u}}[p] \f$
 *
 *  The function takes the coefficient array \a inarray as
 *  input for the transformation
 *
 *  \param inarray: the coeffficients of the expansion
 *
 *  \param outarray: the resulting array of the values of the function at
 *  the physical quadrature points will be stored in the array \a outarray
 */
 
void StdSegExp::v_BwdTrans(const Array<OneD, const NekDouble> &inarray,
                           Array<OneD, NekDouble> &outarray)
{
    int nquad = m_base[0]->GetNumPoints();
 
    if (m_base[0]->Collocation())
    {
        Vmath::Vcopy(nquad, inarray, 1, outarray, 1);
    }
    else
    {
 
        Blas::Dgemv('N', nquad, m_base[0]->GetNumModes(), 1.0,
                    (m_base[0]->GetBdata()).get(), nquad, &inarray[0], 1, 0.0,
                    &outarray[0], 1);
    }
}
 
void StdSegExp::v_ReduceOrderCoeffs(int numMin,
                                    const Array<OneD, const NekDouble> &inarray,
                                    Array<OneD, NekDouble> &outarray)
{
    int n_coeffs = inarray.size();
 
    Array<OneD, NekDouble> coeff(n_coeffs);
    Array<OneD, NekDouble> coeff_tmp(n_coeffs, 0.0);
    Array<OneD, NekDouble> tmp;
    Array<OneD, NekDouble> tmp2;
 
    int nmodes0 = m_base[0]->GetNumModes();
 
    Vmath::Vcopy(n_coeffs, inarray, 1, coeff_tmp, 1);
 
    const LibUtilities::PointsKey Pkey0(nmodes0,
                                        LibUtilities::eGaussLobattoLegendre);
 
    LibUtilities::BasisKey b0(m_base[0]->GetBasisType(), nmodes0, Pkey0);
 
    LibUtilities::BasisKey bortho0(LibUtilities::eOrtho_A, nmodes0, Pkey0);
 
    LibUtilities::InterpCoeff1D(b0, coeff_tmp, bortho0, coeff);
 
    Vmath::Zero(n_coeffs, coeff_tmp, 1);
 
    Vmath::Vcopy(numMin, tmp = coeff, 1, tmp2 = coeff_tmp, 1);
 
    LibUtilities::InterpCoeff1D(bortho0, coeff_tmp, b0, outarray);
}
 
/**
 * \brief Forward transform from physical quadrature space stored in \a
 * inarray and evaluate the expansion coefficients and store in \a
 * outarray
 *
 * Perform a forward transform using a Galerkin projection by taking the
 * inner product of the physical points and multiplying by the inverse
 * of the mass matrix using the Solve method of the standard matrix
 * container holding the local mass matrix, i.e. \f$ {\bf \hat{u}} =
 * {\bf M}^{-1} {\bf I} \f$ where \f$ {\bf I}[p] = \int^1_{-1}
 * \phi_p(\xi_1) u(\xi_1) d\xi_1 \f$
 *
 * This function stores the expansion coefficients calculated by the
 * transformation in the coefficient space array \a outarray
 *
 * \param inarray: array of physical quadrature points to be transformed
 * \param outarray: the coeffficients of the expansion
 */
void StdSegExp::v_FwdTrans(const Array<OneD, const NekDouble> &inarray,
                           Array<OneD, NekDouble> &outarray)
{
    if (m_base[0]->Collocation())
    {
        Vmath::Vcopy(m_ncoeffs, inarray, 1, outarray, 1);
    }
    else
    {
        v_IProductWRTBase(inarray, outarray);
 
        // get Mass matrix inverse
        StdMatrixKey masskey(eInvMass, v_DetShapeType(), *this);
        DNekMatSharedPtr matsys = GetStdMatrix(masskey);
 
        NekVector<NekDouble> in(m_ncoeffs, outarray, eCopy);
        NekVector<NekDouble> out(m_ncoeffs, outarray, eWrapper);
 
        out = (*matsys) * in;
    }
}
 
void StdSegExp::v_FwdTransBndConstrained(
    const Array<OneD, const NekDouble> &inarray,
    Array<OneD, NekDouble> &outarray)
{
    if (m_base[0]->Collocation())
    {
        Vmath::Vcopy(m_ncoeffs, inarray, 1, outarray, 1);
    }
    else
    {
        int nInteriorDofs = m_ncoeffs - 2;
        int offset        = 0;
 
        switch (m_base[0]->GetBasisType())
        {
            case LibUtilities::eGLL_Lagrange:
            {
                offset = 1;
            }
            break;
            case LibUtilities::eGauss_Lagrange:
            {
                nInteriorDofs = m_ncoeffs;
                offset        = 0;
            }
            break;
            case LibUtilities::eModified_A:
            case LibUtilities::eModified_B:
            {
                offset = 2;
            }
            break;
            default:
                ASSERTL0(false, "This type of FwdTrans is not defined for this "
                                "expansion type");
        }
 
        fill(outarray.get(), outarray.get() + m_ncoeffs, 0.0);
 
        if (m_base[0]->GetBasisType() != LibUtilities::eGauss_Lagrange)
        {
            outarray[GetVertexMap(0)] = inarray[0];
            outarray[GetVertexMap(1)] = inarray[m_base[0]->GetNumPoints() - 1];
 
            if (m_ncoeffs > 2)
            {
                // ideally, we would like to have tmp0 to be replaced by
                // outarray (currently MassMatrixOp does not allow aliasing)
                Array<OneD, NekDouble> tmp0(m_ncoeffs);
                Array<OneD, NekDouble> tmp1(m_ncoeffs);
 
                StdMatrixKey masskey(eMass, v_DetShapeType(), *this);
                MassMatrixOp(outarray, tmp0, masskey);
                v_IProductWRTBase(inarray, tmp1);
 
                Vmath::Vsub(m_ncoeffs, tmp1, 1, tmp0, 1, tmp1, 1);
 
                // get Mass matrix inverse (only of interior DOF)
                DNekMatSharedPtr matsys =
                    (m_stdStaticCondMatrixManager[masskey])->GetBlock(1, 1);
 
                Blas::Dgemv('N', nInteriorDofs, nInteriorDofs, 1.0,
                            &(matsys->GetPtr())[0], nInteriorDofs,
                            tmp1.get() + offset, 1, 0.0,
                            outarray.get() + offset, 1);
            }
        }
        else
        {
            StdSegExp::v_FwdTrans(inarray, outarray);
        }
    }
}
 
void StdSegExp::v_BwdTrans_SumFac(const Array<OneD, const NekDouble> &inarray,
                                  Array<OneD, NekDouble> &outarray)
{
    v_BwdTrans(inarray, outarray);
}
 
//---------------------------------------------------------------------
// Inner product functions
//---------------------------------------------------------------------
 
/** \brief  Inner product of \a inarray over region with respect to
 *  expansion basis \a base and return in \a outarray
 *
 *  Calculate \f$ I[p] = \int^{1}_{-1} \phi_p(\xi_1) u(\xi_1) d\xi_1
 *  = \sum_{i=0}^{nq-1} \phi_p(\xi_{1i}) u(\xi_{1i}) w_i \f$ where
 *  \f$ outarray[p] = I[p], inarray[i] = u(\xi_{1i}), base[p*nq+i] =
 *  \phi_p(\xi_{1i}) \f$.
 *
 *  \param  base an array defining the local basis for the inner product
 *  usually passed from Basis->GetBdata() or Basis->GetDbdata()
 *  \param inarray: physical point array of function to be integrated
 *  \f$ u(\xi_1) \f$
 *  \param coll_check flag to identify when a Basis->Collocation() call
 *  should be performed to see if this is a GLL_Lagrange basis with a
 *  collocation property. (should be set to 0 if taking the inner
 *  product with respect to the derivative of basis)
 *  \param outarray  the values of the inner product with respect to
 *  each basis over region will be stored in the array \a outarray as
 *  output of the function
 */
 
void StdSegExp::v_IProductWRTBase(const Array<OneD, const NekDouble> &base,
                                  const Array<OneD, const NekDouble> &inarray,
                                  Array<OneD, NekDouble> &outarray,
                                  int coll_check)
{
    boost::ignore_unused(coll_check);
 
    int nquad = m_base[0]->GetNumPoints();
    Array<OneD, NekDouble> tmp(nquad);
    Array<OneD, const NekDouble> w = m_base[0]->GetW();
 
    Vmath::Vmul(nquad, inarray, 1, w, 1, tmp, 1);
 
    /* Comment below was a bug for collocated basis
    if(coll_check&&m_base[0]->Collocation())
    {
        Vmath::Vcopy(nquad, tmp, 1, outarray, 1);
    }
    else
    {
        Blas::Dgemv('T',nquad,m_ncoeffs,1.0,base.get(),nquad,
                    &tmp[0],1,0.0,outarray.get(),1);
    }*/
 
    // Correct implementation
    Blas::Dgemv('T', nquad, m_ncoeffs, 1.0, base.get(), nquad, &tmp[0], 1, 0.0,
                outarray.get(), 1);
}
 
/** \brief Inner product of \a inarray over region with respect to the
 *  expansion basis (this)->m_base[0] and return in \a outarray
 *
 *  Wrapper call to StdSegExp::IProductWRTBase
 *  \param inarray array of function values evaluated at the physical
 *  collocation points
 *  \param outarray  the values of the inner product with respect to
 *  each basis over region will be stored in the array \a outarray as
 *  output of the function
 */
void StdSegExp::v_IProductWRTBase(const Array<OneD, const NekDouble> &inarray,
                                  Array<OneD, NekDouble> &outarray)
{
    v_IProductWRTBase(m_base[0]->GetBdata(), inarray, outarray, 1);
}
 
void StdSegExp::v_IProductWRTDerivBase(
    const int dir, const Array<OneD, const NekDouble> &inarray,
    Array<OneD, NekDouble> &outarray)
{
    StdSegExp::IProductWRTDerivBase_SumFac(dir, inarray, outarray);
}
 
void StdSegExp::v_IProductWRTDerivBase_SumFac(
    const int dir, const Array<OneD, const NekDouble> &inarray,
    Array<OneD, NekDouble> &outarray)
{
    boost::ignore_unused(dir);
    ASSERTL1(dir == 0, "input dir is out of range");
    StdSegExp::v_IProductWRTBase(m_base[0]->GetDbdata(), inarray, outarray, 1);
}
 
void StdSegExp::v_IProductWRTBase_SumFac(
    const Array<OneD, const NekDouble> &inarray,
    Array<OneD, NekDouble> &outarray, bool multiplybyweights)
{
    int nquad = m_base[0]->GetNumPoints();
    Array<OneD, NekDouble> tmp(nquad);
    Array<OneD, const NekDouble> w    = m_base[0]->GetW();
    Array<OneD, const NekDouble> base = m_base[0]->GetBdata();
 
    if (multiplybyweights)
    {
        Vmath::Vmul(nquad, inarray, 1, w, 1, tmp, 1);
 
        Blas::Dgemv('T', nquad, m_ncoeffs, 1.0, base.get(), nquad, &tmp[0], 1,
                    0.0, outarray.get(), 1);
    }
    else
    {
        Blas::Dgemv('T', nquad, m_ncoeffs, 1.0, base.get(), nquad, &inarray[0],
                    1, 0.0, outarray.get(), 1);
    }
}
 
//----------------------------
// Evaluation
//----------------------------
void StdSegExp::v_LocCoordToLocCollapsed(const Array<OneD, const NekDouble> &xi,
                                         Array<OneD, NekDouble> &eta)
{
    eta[0] = xi[0];
}
 
void StdSegExp::v_LocCollapsedToLocCoord(
    const Array<OneD, const NekDouble> &eta, Array<OneD, NekDouble> &xi)
{
    xi[0] = eta[0];
}
 
void StdSegExp::v_FillMode(const int mode, Array<OneD, NekDouble> &outarray)
{
    int nquad             = m_base[0]->GetNumPoints();
    const NekDouble *base = m_base[0]->GetBdata().get();
 
    ASSERTL2(mode <= m_ncoeffs,
             "calling argument mode is larger than total expansion order");
 
    Vmath::Vcopy(nquad, (NekDouble *)base + mode * nquad, 1, &outarray[0], 1);
}
 
NekDouble StdSegExp::v_PhysEvaluateBasis(
    const Array<OneD, const NekDouble> &coords, int mode)
{
    return StdExpansion::BaryEvaluateBasis<0>(coords[0], mode);
}
 
void StdSegExp::v_LaplacianMatrixOp(const Array<OneD, const NekDouble> &inarray,
                                    Array<OneD, NekDouble> &outarray,
                                    const StdMatrixKey &mkey)
{
    boost::ignore_unused(mkey);
 
    int nquad = m_base[0]->GetNumPoints();
 
    Array<OneD, NekDouble> physValues(nquad);
    Array<OneD, NekDouble> dPhysValuesdx(nquad);
 
    v_BwdTrans(inarray, physValues);
 
    // Laplacian matrix operation
    v_PhysDeriv(physValues, dPhysValuesdx);
    v_IProductWRTBase(m_base[0]->GetDbdata(), dPhysValuesdx, outarray, 1);
}
 
void StdSegExp::v_HelmholtzMatrixOp(const Array<OneD, const NekDouble> &inarray,
                                    Array<OneD, NekDouble> &outarray,
                                    const StdMatrixKey &mkey)
{
    int nquad = m_base[0]->GetNumPoints();
 
    Array<OneD, NekDouble> physValues(nquad);
    Array<OneD, NekDouble> dPhysValuesdx(nquad);
    Array<OneD, NekDouble> wsp(m_ncoeffs);
 
    v_BwdTrans(inarray, physValues);
 
    // mass matrix operation
    v_IProductWRTBase((m_base[0]->GetBdata()), physValues, wsp, 1);
 
    // Laplacian matrix operation
    v_PhysDeriv(physValues, dPhysValuesdx);
    v_IProductWRTBase(m_base[0]->GetDbdata(), dPhysValuesdx, outarray, 1);
    Blas::Daxpy(m_ncoeffs, mkey.GetConstFactor(eFactorLambda), wsp.get(), 1,
                outarray.get(), 1);
}
 
void StdSegExp::v_SVVLaplacianFilter(Array<OneD, NekDouble> &array,
                                     const StdMatrixKey &mkey)
{
    // Generate an orthogonal expansion
    int nq     = m_base[0]->GetNumPoints();
    int nmodes = m_base[0]->GetNumModes();
    // Declare orthogonal basis.
    LibUtilities::PointsKey pKey(nq, m_base[0]->GetPointsType());
 
    LibUtilities::BasisKey B(LibUtilities::eOrtho_A, nmodes, pKey);
    StdSegExp OrthoExp(B);
 
    // SVV parameters loaded from the .xml case file
    NekDouble SvvDiffCoeff = mkey.GetConstFactor(eFactorSVVDiffCoeff);
    int cutoff = (int)(mkey.GetConstFactor(eFactorSVVCutoffRatio)) * nmodes;
 
    Array<OneD, NekDouble> orthocoeffs(OrthoExp.GetNcoeffs());
 
    // project onto modal  space.
    OrthoExp.FwdTrans(array, orthocoeffs);
 
    //
    for (int j = 0; j < nmodes; ++j)
    {
        if (j >= cutoff) // to filter out only the "high-modes"
        {
            orthocoeffs[j] *=
                (SvvDiffCoeff *
                 exp(-(j - nmodes) * (j - nmodes) /
                     ((NekDouble)((j - cutoff + 1) * (j - cutoff + 1)))));
        }
        else
        {
            orthocoeffs[j] *= 0.0;
        }
    }
 
    // backward transform to physical space
    OrthoExp.BwdTrans(orthocoeffs, array);
}
 
void StdSegExp::v_ExponentialFilter(Array<OneD, NekDouble> &array,
                                    const NekDouble alpha,
                                    const NekDouble exponent,
                                    const NekDouble cutoff)
{
    // Generate an orthogonal expansion
    int nq     = m_base[0]->GetNumPoints();
    int nmodes = m_base[0]->GetNumModes();
    int P      = nmodes - 1;
    // Declare orthogonal basis.
    LibUtilities::PointsKey pKey(nq, m_base[0]->GetPointsType());
 
    LibUtilities::BasisKey B(LibUtilities::eOrtho_A, nmodes, pKey);
    StdSegExp OrthoExp(B);
 
    // Cutoff
    int Pcut = cutoff * P;
 
    // Project onto orthogonal space.
    Array<OneD, NekDouble> orthocoeffs(OrthoExp.GetNcoeffs());
    OrthoExp.FwdTrans(array, orthocoeffs);
 
    //
    NekDouble fac;
    for (int j = 0; j < nmodes; ++j)
    {
        // to filter out only the "high-modes"
        if (j > Pcut)
        {
            fac = (NekDouble)(j - Pcut) / ((NekDouble)(P - Pcut));
            fac = pow(fac, exponent);
            orthocoeffs[j] *= exp(-alpha * fac);
        }
    }
 
    // backward transform to physical space
    OrthoExp.BwdTrans(orthocoeffs, array);
}
 
// up to here
void StdSegExp::v_MultiplyByStdQuadratureMetric(
    const Array<OneD, const NekDouble> &inarray,
    Array<OneD, NekDouble> &outarray)
{
    int nquad0 = m_base[0]->GetNumPoints();
 
    const Array<OneD, const NekDouble> &w0 = m_base[0]->GetW();
 
    Vmath::Vmul(nquad0, inarray.get(), 1, w0.get(), 1, outarray.get(), 1);
}
 
void StdSegExp::v_GetCoords(Array<OneD, NekDouble> &coords_0,
                            Array<OneD, NekDouble> &coords_1,
                            Array<OneD, NekDouble> &coords_2)
{
    boost::ignore_unused(coords_1, coords_2);
    Blas::Dcopy(GetNumPoints(0), (m_base[0]->GetZ()).get(), 1, &coords_0[0], 1);
}
 
//---------------------------------------------------------------------
// Helper functions
//---------------------------------------------------------------------
 
int StdSegExp::v_GetNverts() const
{
    return 2;
}
 
int StdSegExp::v_GetNtraces() const
{
    return 2;
}
 
int StdSegExp::v_GetTraceNcoeffs(const int i) const
{
    boost::ignore_unused(i);
    return 1;
}
 
int StdSegExp::v_GetTraceIntNcoeffs(const int i) const
{
    boost::ignore_unused(i);
    return 0;
}
 
int StdSegExp::v_GetTraceNumPoints(const int i) const
{
    boost::ignore_unused(i);
    return 1;
}
 
int StdSegExp::v_NumBndryCoeffs() const
{
    return 2;
}
 
int StdSegExp::v_NumDGBndryCoeffs() const
{
    return 2;
}
 
int StdSegExp::v_CalcNumberOfCoefficients(
    const std::vector<unsigned int> &nummodes, int &modes_offset)
{
    int nmodes = nummodes[modes_offset];
    modes_offset += 1;
 
    return nmodes;
}
 
//---------------------------------------------------------------------
// Wrapper functions
//---------------------------------------------------------------------
 
DNekMatSharedPtr StdSegExp::v_GenMatrix(const StdMatrixKey &mkey)
{
    DNekMatSharedPtr Mat;
    MatrixType mattype;
 
    switch (mattype = mkey.GetMatrixType())
    {
        case ePhysInterpToEquiSpaced:
        {
            int nq = m_base[0]->GetNumPoints();
 
            // take definition from key
            if (mkey.ConstFactorExists(eFactorConst))
            {
                nq = (int)mkey.GetConstFactor(eFactorConst);
            }
 
            int neq = LibUtilities::StdSegData::getNumberOfCoefficients(nq);
            Array<OneD, NekDouble> coords(1);
            DNekMatSharedPtr I;
            Mat = MemoryManager<DNekMat>::AllocateSharedPtr(neq, nq);
 
            for (int i = 0; i < neq; ++i)
            {
                coords[0] = -1.0 + 2 * i / (NekDouble)(neq - 1);
                I         = m_base[0]->GetI(coords);
                Vmath::Vcopy(nq, I->GetRawPtr(), 1, Mat->GetRawPtr() + i, neq);
            }
        }
        break;
        case eFwdTrans:
        {
            Mat =
                MemoryManager<DNekMat>::AllocateSharedPtr(m_ncoeffs, m_ncoeffs);
            StdMatrixKey iprodkey(eIProductWRTBase, v_DetShapeType(), *this);
            DNekMat &Iprod = *GetStdMatrix(iprodkey);
            StdMatrixKey imasskey(eInvMass, v_DetShapeType(), *this);
            DNekMat &Imass = *GetStdMatrix(imasskey);
 
            (*Mat) = Imass * Iprod;
        }
        break;
        default:
        {
            Mat = StdExpansion::CreateGeneralMatrix(mkey);
 
            if (mattype == eMass)
            {
                // For Fourier basis set the imaginary component
                // of mean mode to have a unit diagonal component
                // in mass matrix
                if (m_base[0]->GetBasisType() == LibUtilities::eFourier)
                {
                    (*Mat)(1, 1) = 1.0;
                }
            }
        }
        break;
    }
 
    return Mat;
}
 
DNekMatSharedPtr StdSegExp::v_CreateStdMatrix(const StdMatrixKey &mkey)
{
    return v_GenMatrix(mkey);
}
 
//---------------------------------------------------------------------
// Mappings
//---------------------------------------------------------------------
 
void StdSegExp::v_GetBoundaryMap(Array<OneD, unsigned int> &outarray)
{
    if (outarray.size() != NumBndryCoeffs())
    {
        outarray = Array<OneD, unsigned int>(NumBndryCoeffs());
    }
    const LibUtilities::BasisType Btype = GetBasisType(0);
    int nummodes                        = m_base[0]->GetNumModes();
 
    outarray[0] = 0;
 
    switch (Btype)
    {
        case LibUtilities::eGLL_Lagrange:
        case LibUtilities::eGauss_Lagrange:
        case LibUtilities::eChebyshev:
        case LibUtilities::eFourier:
            outarray[1] = nummodes - 1;
            break;
        case LibUtilities::eModified_A:
        case LibUtilities::eModified_B:
            outarray[1] = 1;
            break;
        default:
            ASSERTL0(0, "Mapping array is not defined for this expansion");
            break;
    }
}
 
void StdSegExp::v_GetInteriorMap(Array<OneD, unsigned int> &outarray)
{
    int i;
    if (outarray.size() != GetNcoeffs() - NumBndryCoeffs())
    {
        outarray = Array<OneD, unsigned int>(GetNcoeffs() - NumBndryCoeffs());
    }
    const LibUtilities::BasisType Btype = GetBasisType(0);
 
    switch (Btype)
    {
        case LibUtilities::eGLL_Lagrange:
        case LibUtilities::eGauss_Lagrange:
        case LibUtilities::eChebyshev:
        case LibUtilities::eFourier:
            for (i = 0; i < GetNcoeffs() - 2; i++)
            {
                outarray[i] = i + 1;
            }
            break;
        case LibUtilities::eModified_A:
        case LibUtilities::eModified_B:
            for (i = 0; i < GetNcoeffs() - 2; i++)
            {
                outarray[i] = i + 2;
            }
            break;
        default:
            ASSERTL0(0, "Mapping array is not defined for this expansion");
            break;
    }
}
 
int StdSegExp::v_GetVertexMap(int localVertexId, bool useCoeffPacking)
{
    boost::ignore_unused(useCoeffPacking);
    ASSERTL0((localVertexId == 0) || (localVertexId == 1),
             "local vertex id"
             "must be between 0 or 1");
 
    int localDOF = localVertexId;
 
    if ((m_base[0]->GetBasisType() == LibUtilities::eGLL_Lagrange) &&
        (localVertexId == 1))
    {
        localDOF = m_base[0]->GetNumModes() - 1;
    }
    return localDOF;
}
 
void StdSegExp::v_GetSimplexEquiSpacedConnectivity(Array<OneD, int> &conn,
                                                   bool standard)
{
    boost::ignore_unused(standard);
    int np = m_base[0]->GetNumPoints();
 
    conn    = Array<OneD, int>(2 * (np - 1));
    int cnt = 0;
    for (int i = 0; i < np - 1; ++i)
    {
        conn[cnt++] = i;
        conn[cnt++] = i + 1;
    }
}
 
/**  \brief Get the map of the coefficient location to teh
 *    local trace coefficients
 */
 
void StdSegExp::v_GetTraceCoeffMap(const unsigned int traceid,
                                   Array<OneD, unsigned int> &maparray)
{
    int order0 = m_base[0]->GetNumModes();
 
    ASSERTL0(traceid < 2, "eid must be between 0 and 1");
 
    if (maparray.size() != 1)
    {
        maparray = Array<OneD, unsigned int>(1);
    }
 
    const LibUtilities::BasisType bType = GetBasisType(0);
 
    if (bType == LibUtilities::eModified_A)
    {
        maparray[0] = (traceid == 0) ? 0 : 1;
    }
    else if (bType == LibUtilities::eGLL_Lagrange ||
             bType == LibUtilities::eGauss_Lagrange)
    {
        maparray[0] = (traceid == 0) ? 0 : order0 - 1;
    }
    else
    {
        ASSERTL0(false, "Unknown Basis");
    }
}
 
void StdSegExp::v_GetTraceToElementMap(const int tid,
                                       Array<OneD, unsigned int> &maparray,
                                       Array<OneD, int> &signarray,
                                       Orientation orient, int P, int Q)
{
    boost::ignore_unused(orient, P, Q);
 
    v_GetTraceCoeffMap(tid, maparray);
 
    if (signarray.size() != 1)
    {
        signarray = Array<OneD, int>(1, 1);
    }
    else
    {
        signarray[0] = 1;
    }
}
 
void StdSegExp::v_GetElmtTraceToTraceMap(const unsigned int eid,
                                         Array<OneD, unsigned int> &maparray,
                                         Array<OneD, int> &signarray,
                                         Orientation orient, int P, int Q)
{
    // parameters for higher dimnesion traces
    boost::ignore_unused(eid, orient, P, Q);
    if (maparray.size() != 1)
    {
        maparray = Array<OneD, unsigned int>(1);
    }
 
    maparray[0] = 0;
 
    if (signarray.size() != 1)
    {
        signarray = Array<OneD, int>(1, 1);
    }
    else
    {
        signarray[0] = 1;
    }
}
 
} // namespace StdRegions
} // namespace Nektar