Nektar++
Winslow99.cpp
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1///////////////////////////////////////////////////////////////////////////////
2//
3// File: Winslow99.cpp
4//
5// For more information, please see: http://www.nektar.info
6//
7// The MIT License
8//
9// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
10// Department of Aeronautics, Imperial College London (UK), and Scientific
11// Computing and Imaging Institute, University of Utah (USA).
12//
13// Permission is hereby granted, free of charge, to any person obtaining a
14// copy of this software and associated documentation files (the "Software"),
15// to deal in the Software without restriction, including without limitation
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17// and/or sell copies of the Software, and to permit persons to whom the
18// Software is furnished to do so, subject to the following conditions:
19//
20// The above copyright notice and this permission notice shall be included
21// in all copies or substantial portions of the Software.
22//
23// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
24// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
25// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
26// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
27// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
28// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
29// DEALINGS IN THE SOFTWARE.
30//
31// Description: Winslow 1999 cell model
32//
33///////////////////////////////////////////////////////////////////////////////
34
35#include <iostream>
36#include <string>
37//#include <LibUtilities/BasicUtils/Vmath.hpp>
39
40namespace Nektar
41{
42std::string Winslow99::className =
44 "Winslow99", Winslow99::create, "Winslow 1999 cell model.");
45
46/**
47 *
48 */
51 : CellModel(pSession, pField)
52{
53 m_nvar = 33;
54 m_gates.push_back(1);
55 m_gates.push_back(2);
56 m_gates.push_back(3);
57 m_gates.push_back(4);
58 m_gates.push_back(5);
59 m_gates.push_back(6);
60 m_gates.push_back(7);
61 m_concentrations.push_back(8);
62 m_concentrations.push_back(9);
63 m_concentrations.push_back(10);
64 m_concentrations.push_back(11);
65 m_concentrations.push_back(12);
66 m_concentrations.push_back(13);
67 m_concentrations.push_back(14);
68 m_concentrations.push_back(15);
69 m_concentrations.push_back(16);
70 m_concentrations.push_back(17);
71 m_concentrations.push_back(18);
72 m_concentrations.push_back(19);
73 m_gates.push_back(20);
74 m_concentrations.push_back(21);
75 m_concentrations.push_back(22);
76 m_concentrations.push_back(23);
77 m_concentrations.push_back(24);
78 m_concentrations.push_back(25);
79 m_concentrations.push_back(26);
80 m_concentrations.push_back(27);
81 m_concentrations.push_back(28);
82 m_concentrations.push_back(29);
83 m_concentrations.push_back(30);
84 m_concentrations.push_back(31);
85 m_concentrations.push_back(32);
86}
87
89 const Array<OneD, const Array<OneD, NekDouble>> &inarray,
90 Array<OneD, Array<OneD, NekDouble>> &outarray, const NekDouble time)
91{
92 boost::ignore_unused(time);
93
94 for (size_t i = 0; i < m_nq; ++i)
95 {
96
97 // Inputs:
98 // Time units: millisecond
99 NekDouble var_chaste_interface__membrane__V = inarray[0][i];
100 // Units: millivolt; Initial value: -96.1638
101 NekDouble var_chaste_interface__fast_sodium_current_m_gate__m =
102 inarray[1][i];
103 // Units: dimensionless; Initial value: 0.0328302
104 NekDouble var_chaste_interface__fast_sodium_current_h_gate__h =
105 inarray[2][i];
106 // Units: dimensionless; Initial value: 0.988354
107 NekDouble var_chaste_interface__fast_sodium_current_j_gate__j =
108 inarray[3][i];
109 // Units: dimensionless; Initial value: 0.99254
111 var_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr =
112 inarray[4][i];
113 // Units: dimensionless; Initial value: 0.51
115 var_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks =
116 inarray[5][i];
117 // Units: dimensionless; Initial value: 0.264
119 var_chaste_interface__transient_outward_potassium_current_X_to1_gate__X_to1 =
120 inarray[6][i];
121 // Units: dimensionless; Initial value: 2.63
123 var_chaste_interface__transient_outward_potassium_current_Y_to1_gate__Y_to1 =
124 inarray[7][i];
125 // Units: dimensionless; Initial value: 0.99
126 NekDouble var_chaste_interface__L_type_Ca_current__O = inarray[8][i];
127 // Units: dimensionless; Initial value: 9.84546e-21
128 NekDouble var_chaste_interface__L_type_Ca_current__O_Ca = inarray[9][i];
129 // Units: dimensionless; Initial value: 0
130 NekDouble var_chaste_interface__L_type_Ca_current__C0 = inarray[10][i];
131 // Units: dimensionless; Initial value: 0.997208
132 NekDouble var_chaste_interface__L_type_Ca_current__C1 = inarray[11][i];
133 // Units: dimensionless; Initial value: 6.38897e-5
134 NekDouble var_chaste_interface__L_type_Ca_current__C2 = inarray[12][i];
135 // Units: dimensionless; Initial value: 1.535e-9
136 NekDouble var_chaste_interface__L_type_Ca_current__C3 = inarray[13][i];
137 // Units: dimensionless; Initial value: 1.63909e-14
138 NekDouble var_chaste_interface__L_type_Ca_current__C4 = inarray[14][i];
139 // Units: dimensionless; Initial value: 6.56337e-20
140 NekDouble var_chaste_interface__L_type_Ca_current__C_Ca0 =
141 inarray[15][i];
142 // Units: dimensionless; Initial value: 0.00272826
143 NekDouble var_chaste_interface__L_type_Ca_current__C_Ca1 =
144 inarray[16][i];
145 // Units: dimensionless; Initial value: 6.99215e-7
146 NekDouble var_chaste_interface__L_type_Ca_current__C_Ca2 =
147 inarray[17][i];
148 // Units: dimensionless; Initial value: 6.71989e-11
149 NekDouble var_chaste_interface__L_type_Ca_current__C_Ca3 =
150 inarray[18][i];
151 // Units: dimensionless; Initial value: 2.87031e-15
152 NekDouble var_chaste_interface__L_type_Ca_current__C_Ca4 =
153 inarray[19][i];
154 // Units: dimensionless; Initial value: 4.59752e-20
155 NekDouble var_chaste_interface__L_type_Ca_current_y_gate__y =
156 inarray[20][i];
157 // Units: dimensionless; Initial value: 0.798
158 NekDouble var_chaste_interface__RyR_channel__P_O1 = inarray[21][i];
159 // Units: dimensionless; Initial value: 0
160 NekDouble var_chaste_interface__RyR_channel__P_O2 = inarray[22][i];
161 // Units: dimensionless; Initial value: 0
162 NekDouble var_chaste_interface__RyR_channel__P_C1 = inarray[23][i];
163 // Units: dimensionless; Initial value: 0.47
164 NekDouble var_chaste_interface__RyR_channel__P_C2 = inarray[24][i];
165 // Units: dimensionless; Initial value: 0.53
166 NekDouble var_chaste_interface__intracellular_Ca_fluxes__HTRPNCa =
167 inarray[25][i];
168 // Units: millimolar; Initial value: 0.98
169 NekDouble var_chaste_interface__intracellular_Ca_fluxes__LTRPNCa =
170 inarray[26][i];
171 // Units: millimolar; Initial value: 0.078
172 NekDouble var_chaste_interface__intracellular_ion_concentrations__Nai =
173 inarray[27][i];
174 // Units: millimolar; Initial value: 10
175 NekDouble var_chaste_interface__intracellular_ion_concentrations__Cai =
176 inarray[28][i];
177 // Units: millimolar; Initial value: 0.00008
178 NekDouble var_chaste_interface__intracellular_ion_concentrations__Ki =
179 inarray[29][i];
180 // Units: millimolar; Initial value: 157.8
182 var_chaste_interface__intracellular_ion_concentrations__Ca_ss =
183 inarray[30][i];
184 // Units: millimolar; Initial value: 0.00011
186 var_chaste_interface__intracellular_ion_concentrations__Ca_JSR =
187 inarray[31][i];
188 // Units: millimolar; Initial value: 0.257
190 var_chaste_interface__intracellular_ion_concentrations__Ca_NSR =
191 inarray[32][i];
192 // Units: millimolar; Initial value: 0.257
193
194 // Mathematics
195 NekDouble d_dt_chaste_interface__membrane__V;
196 const NekDouble var_membrane__R = 8.314472; // joule_per_mole_kelvin
197 const NekDouble var_membrane__T = 310.0; // kelvin
198 const NekDouble var_membrane__F = 96.4853415; // coulomb_per_millimole
199 const NekDouble var_fast_sodium_current__j =
200 var_chaste_interface__fast_sodium_current_j_gate__j; // dimensionless
201 const NekDouble var_fast_sodium_current__h =
202 var_chaste_interface__fast_sodium_current_h_gate__h; // dimensionless
203 const NekDouble var_fast_sodium_current__g_Na =
204 12.8; // milliS_per_microF
205 const NekDouble var_fast_sodium_current__m =
206 var_chaste_interface__fast_sodium_current_m_gate__m; // dimensionless
207 const NekDouble var_fast_sodium_current__V =
208 var_chaste_interface__membrane__V; // millivolt
209 const NekDouble var_fast_sodium_current__R =
210 var_membrane__R; // joule_per_mole_kelvin
211 const NekDouble var_fast_sodium_current__F =
212 var_membrane__F; // coulomb_per_millimole
213 const NekDouble var_standard_ionic_concentrations__Nao =
214 138.0; // millimolar
215 const NekDouble var_fast_sodium_current__Nao =
216 var_standard_ionic_concentrations__Nao; // millimolar
217 const NekDouble var_fast_sodium_current__Nai =
218 var_chaste_interface__intracellular_ion_concentrations__Nai; // millimolar
219 const NekDouble var_fast_sodium_current__T = var_membrane__T; // kelvin
220 const NekDouble var_fast_sodium_current__E_Na =
221 ((var_fast_sodium_current__R * var_fast_sodium_current__T) /
222 var_fast_sodium_current__F) *
223 log(var_fast_sodium_current__Nao /
224 var_fast_sodium_current__Nai); // millivolt
225 const NekDouble var_fast_sodium_current__i_Na =
226 var_fast_sodium_current__g_Na *
227 pow(var_fast_sodium_current__m, 3.0) * var_fast_sodium_current__h *
228 var_fast_sodium_current__j *
229 (var_fast_sodium_current__V -
230 var_fast_sodium_current__E_Na); // microA_per_microF
231 const NekDouble var_L_type_Ca_current__O =
232 var_chaste_interface__L_type_Ca_current__O; // dimensionless
233 const NekDouble var_L_type_Ca_current__F =
234 var_membrane__F; // coulomb_per_millimole
235 const NekDouble var_L_type_Ca_current__P_Ca =
236 0.0003125; // cm_per_second
237 const NekDouble var_standard_ionic_concentrations__Cao =
238 2.0; // millimolar
239 const NekDouble var_L_type_Ca_current__Cao =
240 var_standard_ionic_concentrations__Cao; // millimolar
241 const NekDouble var_L_type_Ca_current__V =
242 var_chaste_interface__membrane__V; // millivolt
243 const NekDouble var_L_type_Ca_current__T = var_membrane__T; // kelvin
244 const NekDouble var_L_type_Ca_current__R =
245 var_membrane__R; // joule_per_mole_kelvin
246 const NekDouble var_L_type_Ca_current__i_Ca_max =
247 ((((var_L_type_Ca_current__P_Ca / (1.0 * 1.0)) * 4.0 *
248 var_L_type_Ca_current__V * pow(var_L_type_Ca_current__F, 2.0) *
249 1000.0) /
250 (var_L_type_Ca_current__R * var_L_type_Ca_current__T)) *
251 ((0.001 *
252 exp((2.0 * var_L_type_Ca_current__V * var_L_type_Ca_current__F) /
253 (var_L_type_Ca_current__R * var_L_type_Ca_current__T))) -
254 (0.341 * var_L_type_Ca_current__Cao))) /
255 (exp((2.0 * var_L_type_Ca_current__V * var_L_type_Ca_current__F) /
256 (var_L_type_Ca_current__R * var_L_type_Ca_current__T)) -
257 1.0); // microA_per_microF
258 const NekDouble var_L_type_Ca_current__y =
259 var_chaste_interface__L_type_Ca_current_y_gate__y; // dimensionless
260 const NekDouble var_L_type_Ca_current__O_Ca =
261 var_chaste_interface__L_type_Ca_current__O_Ca; // dimensionless
262 const NekDouble var_L_type_Ca_current__i_Ca =
263 var_L_type_Ca_current__i_Ca_max * var_L_type_Ca_current__y *
264 (var_L_type_Ca_current__O +
265 var_L_type_Ca_current__O_Ca); // microA_per_microF
266 const NekDouble var_L_type_Ca_current__P_K = 5.79e-07; // cm_per_second
267 const NekDouble var_L_type_Ca_current__i_Ca_half =
268 -0.265; // microA_per_microF
269 const NekDouble var_L_type_Ca_current__p_prime_k =
270 var_L_type_Ca_current__P_K /
271 (1.0 + (var_L_type_Ca_current__i_Ca_max /
272 var_L_type_Ca_current__i_Ca_half)); // cm_per_second
273 const NekDouble var_standard_ionic_concentrations__Ko =
274 4.0; // millimolar
275 const NekDouble var_L_type_Ca_current__Ko =
276 var_standard_ionic_concentrations__Ko; // millimolar
277 const NekDouble var_L_type_Ca_current__Ki =
278 var_chaste_interface__intracellular_ion_concentrations__Ki; // millimolar
279 const NekDouble var_L_type_Ca_current__i_Ca_K =
280 ((((var_L_type_Ca_current__p_prime_k / (1.0 * 1.0)) *
281 var_L_type_Ca_current__y *
282 (var_L_type_Ca_current__O + var_L_type_Ca_current__O_Ca) *
283 var_L_type_Ca_current__V * pow(var_L_type_Ca_current__F, 2.0)) /
284 (var_L_type_Ca_current__R * var_L_type_Ca_current__T)) *
285 ((var_L_type_Ca_current__Ki *
286 exp((var_L_type_Ca_current__V * var_L_type_Ca_current__F) /
287 (var_L_type_Ca_current__R * var_L_type_Ca_current__T))) -
288 var_L_type_Ca_current__Ko)) /
289 (exp((var_L_type_Ca_current__V * var_L_type_Ca_current__F) /
290 (var_L_type_Ca_current__R * var_L_type_Ca_current__T)) -
291 1.0); // microA_per_microF
292 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__Ko =
293 var_standard_ionic_concentrations__Ko; // millimolar
294 const NekDouble
295 var_rapid_activating_delayed_rectifiyer_K_current__f_Ko =
296 sqrt(var_rapid_activating_delayed_rectifiyer_K_current__Ko /
297 4.0); // dimensionless
298 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__Ki =
299 var_chaste_interface__intracellular_ion_concentrations__Ki; // millimolar
300 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__R =
301 var_membrane__R; // joule_per_mole_kelvin
302 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__F =
303 var_membrane__F; // coulomb_per_millimole
304 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__T =
305 var_membrane__T; // kelvin
306 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__E_K =
307 ((var_rapid_activating_delayed_rectifiyer_K_current__R *
308 var_rapid_activating_delayed_rectifiyer_K_current__T) /
309 var_rapid_activating_delayed_rectifiyer_K_current__F) *
310 log(var_rapid_activating_delayed_rectifiyer_K_current__Ko /
311 var_rapid_activating_delayed_rectifiyer_K_current__Ki); // millivolt
312 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__V =
313 var_chaste_interface__membrane__V; // millivolt
314 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__R_V =
315 1.0 /
316 (1.0 +
317 (1.4945 *
318 exp(0.0446 *
319 var_rapid_activating_delayed_rectifiyer_K_current__V))); // dimensionless
320 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__X_kr =
321 var_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr; // dimensionless
322 const NekDouble
323 var_rapid_activating_delayed_rectifiyer_K_current__g_Kr =
324 0.0034; // milliS_per_microF
325 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current__i_Kr =
326 var_rapid_activating_delayed_rectifiyer_K_current__g_Kr *
327 var_rapid_activating_delayed_rectifiyer_K_current__f_Ko *
328 var_rapid_activating_delayed_rectifiyer_K_current__R_V *
329 var_rapid_activating_delayed_rectifiyer_K_current__X_kr *
330 (var_rapid_activating_delayed_rectifiyer_K_current__V -
331 var_rapid_activating_delayed_rectifiyer_K_current__E_K); // microA_per_microF
332 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__g_Ks =
333 0.0027134; // milliS_per_microF
334 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__Ko =
335 var_standard_ionic_concentrations__Ko; // millimolar
336 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__Nao =
337 var_standard_ionic_concentrations__Nao; // millimolar
338 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__Ki =
339 var_chaste_interface__intracellular_ion_concentrations__Ki; // millimolar
340 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__Nai =
341 var_chaste_interface__intracellular_ion_concentrations__Nai; // millimolar
342 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__R =
343 var_membrane__R; // joule_per_mole_kelvin
344 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__F =
345 var_membrane__F; // coulomb_per_millimole
346 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__T =
347 var_membrane__T; // kelvin
348 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__E_Ks =
349 ((var_slow_activating_delayed_rectifiyer_K_current__R *
350 var_slow_activating_delayed_rectifiyer_K_current__T) /
351 var_slow_activating_delayed_rectifiyer_K_current__F) *
352 log((var_slow_activating_delayed_rectifiyer_K_current__Ko +
353 (0.01833 *
354 var_slow_activating_delayed_rectifiyer_K_current__Nao)) /
355 (var_slow_activating_delayed_rectifiyer_K_current__Ki +
356 (0.01833 *
357 var_slow_activating_delayed_rectifiyer_K_current__Nai))); // millivolt
358 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__V =
359 var_chaste_interface__membrane__V; // millivolt
360 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__X_ks =
361 var_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks; // dimensionless
362 const NekDouble var_slow_activating_delayed_rectifiyer_K_current__i_Ks =
363 var_slow_activating_delayed_rectifiyer_K_current__g_Ks *
364 pow(var_slow_activating_delayed_rectifiyer_K_current__X_ks, 2.0) *
365 (var_slow_activating_delayed_rectifiyer_K_current__V -
366 var_slow_activating_delayed_rectifiyer_K_current__E_Ks); // microA_per_microF
367 const NekDouble var_transient_outward_potassium_current__X_to1 =
368 var_chaste_interface__transient_outward_potassium_current_X_to1_gate__X_to1; // dimensionless
369 const NekDouble var_transient_outward_potassium_current__Y_to1 =
370 var_chaste_interface__transient_outward_potassium_current_Y_to1_gate__Y_to1; // dimensionless
371 const NekDouble var_transient_outward_potassium_current__g_to1 =
372 0.23815; // milliS_per_microF
373 const NekDouble var_transient_outward_potassium_current__E_K =
374 var_rapid_activating_delayed_rectifiyer_K_current__E_K; // millivolt
375 const NekDouble var_transient_outward_potassium_current__V =
376 var_chaste_interface__membrane__V; // millivolt
377 const NekDouble var_transient_outward_potassium_current__i_to1 =
378 var_transient_outward_potassium_current__g_to1 *
379 var_transient_outward_potassium_current__X_to1 *
380 var_transient_outward_potassium_current__Y_to1 *
381 (var_transient_outward_potassium_current__V -
382 var_transient_outward_potassium_current__E_K); // microA_per_microF
383 const NekDouble var_time_independent_potassium_current__Ko =
384 var_standard_ionic_concentrations__Ko; // millimolar
385 const NekDouble var_time_independent_potassium_current__E_K =
386 var_rapid_activating_delayed_rectifiyer_K_current__E_K; // millivolt
387 const NekDouble var_time_independent_potassium_current__F =
388 var_membrane__F; // coulomb_per_millimole
389 const NekDouble var_time_independent_potassium_current_K1_gate__F =
390 var_time_independent_potassium_current__F; // coulomb_per_millimole
391 const NekDouble var_time_independent_potassium_current__V =
392 var_chaste_interface__membrane__V; // millivolt
393 const NekDouble var_time_independent_potassium_current_K1_gate__V =
394 var_time_independent_potassium_current__V; // millivolt
395 const NekDouble var_time_independent_potassium_current__T =
396 var_membrane__T; // kelvin
397 const NekDouble var_time_independent_potassium_current_K1_gate__T =
398 var_time_independent_potassium_current__T; // kelvin
399 const NekDouble var_time_independent_potassium_current_K1_gate__E_K =
400 var_time_independent_potassium_current__E_K; // millivolt
401 const NekDouble var_time_independent_potassium_current__R =
402 var_membrane__R; // joule_per_mole_kelvin
403 const NekDouble var_time_independent_potassium_current_K1_gate__R =
404 var_time_independent_potassium_current__R; // joule_per_mole_kelvin
405 const NekDouble
406 var_time_independent_potassium_current_K1_gate__K1_infinity_V =
407 1.0 /
408 (2.0 +
409 exp(((1.5 *
410 var_time_independent_potassium_current_K1_gate__F) /
411 (var_time_independent_potassium_current_K1_gate__R *
412 var_time_independent_potassium_current_K1_gate__T)) *
413 (var_time_independent_potassium_current_K1_gate__V -
414 var_time_independent_potassium_current_K1_gate__E_K))); // dimensionless
415 const NekDouble var_time_independent_potassium_current__K1_infinity_V =
416 var_time_independent_potassium_current_K1_gate__K1_infinity_V; // dimensionless
417 const NekDouble var_time_independent_potassium_current__g_K1 =
418 2.8; // milliS_per_microF
419 const NekDouble var_time_independent_potassium_current__K_mK1 =
420 13.0; // millimolar
421 const NekDouble var_time_independent_potassium_current__i_K1 =
422 ((var_time_independent_potassium_current__g_K1 *
423 var_time_independent_potassium_current__K1_infinity_V *
424 var_time_independent_potassium_current__Ko) /
425 (var_time_independent_potassium_current__Ko +
426 var_time_independent_potassium_current__K_mK1)) *
427 (var_time_independent_potassium_current__V -
428 var_time_independent_potassium_current__E_K); // microA_per_microF
429 const NekDouble var_plateau_potassium_current__g_Kp =
430 0.002216; // milliS_per_microF
431 const NekDouble var_plateau_potassium_current__V =
432 var_chaste_interface__membrane__V; // millivolt
433 const NekDouble var_plateau_potassium_current_Kp_gate__V =
434 var_plateau_potassium_current__V; // millivolt
435 const NekDouble var_plateau_potassium_current_Kp_gate__Kp_V =
436 1.0 /
437 (1.0 + exp((7.488 - var_plateau_potassium_current_Kp_gate__V) /
438 5.98)); // dimensionless
439 const NekDouble var_plateau_potassium_current__Kp_V =
440 var_plateau_potassium_current_Kp_gate__Kp_V; // dimensionless
441 const NekDouble var_plateau_potassium_current__E_K =
442 var_rapid_activating_delayed_rectifiyer_K_current__E_K; // millivolt
443 const NekDouble var_plateau_potassium_current__i_Kp =
444 var_plateau_potassium_current__g_Kp *
445 var_plateau_potassium_current__Kp_V *
446 (var_plateau_potassium_current__V -
447 var_plateau_potassium_current__E_K); // microA_per_microF
448 const NekDouble var_Na_Ca_exchanger__Nao =
449 var_standard_ionic_concentrations__Nao; // millimolar
450 const NekDouble var_Na_Ca_exchanger__K_sat = 0.2; // dimensionless
451 const NekDouble var_Na_Ca_exchanger__K_mNa = 87.5; // millimolar
452 const NekDouble var_Na_Ca_exchanger__Nai =
453 var_chaste_interface__intracellular_ion_concentrations__Nai; // millimolar
454 const NekDouble var_Na_Ca_exchanger__K_NaCa = 0.3; // microA_per_microF
455 const NekDouble var_Na_Ca_exchanger__V =
456 var_chaste_interface__membrane__V; // millivolt
457 const NekDouble var_Na_Ca_exchanger__T = var_membrane__T; // kelvin
458 const NekDouble var_Na_Ca_exchanger__Cao =
459 var_standard_ionic_concentrations__Cao; // millimolar
460 const NekDouble var_Na_Ca_exchanger__eta = 0.35; // dimensionless
461 const NekDouble var_Na_Ca_exchanger__K_mCa = 1.38; // millimolar
462 const NekDouble var_Na_Ca_exchanger__F =
463 var_membrane__F; // coulomb_per_millimole
464 const NekDouble var_Na_Ca_exchanger__R =
465 var_membrane__R; // joule_per_mole_kelvin
466 const NekDouble var_Na_Ca_exchanger__Cai =
467 var_chaste_interface__intracellular_ion_concentrations__Cai; // millimolar
468 const NekDouble var_Na_Ca_exchanger__i_NaCa =
469 ((var_Na_Ca_exchanger__K_NaCa * 5000.0) /
470 ((pow(var_Na_Ca_exchanger__K_mNa, 3.0) +
471 pow(var_Na_Ca_exchanger__Nao, 3.0)) *
472 (var_Na_Ca_exchanger__K_mCa + var_Na_Ca_exchanger__Cao) *
473 (1.0 +
474 (var_Na_Ca_exchanger__K_sat *
475 exp(((var_Na_Ca_exchanger__eta - 1.0) * var_Na_Ca_exchanger__V *
476 var_Na_Ca_exchanger__F) /
477 (var_Na_Ca_exchanger__R * var_Na_Ca_exchanger__T)))))) *
478 ((exp((var_Na_Ca_exchanger__eta * var_Na_Ca_exchanger__V *
479 var_Na_Ca_exchanger__F) /
480 (var_Na_Ca_exchanger__R * var_Na_Ca_exchanger__T)) *
481 pow(var_Na_Ca_exchanger__Nai, 3.0) * var_Na_Ca_exchanger__Cao) -
482 (exp(((var_Na_Ca_exchanger__eta - 1.0) * var_Na_Ca_exchanger__V *
483 var_Na_Ca_exchanger__F) /
484 (var_Na_Ca_exchanger__R * var_Na_Ca_exchanger__T)) *
485 pow(var_Na_Ca_exchanger__Nao, 3.0) *
486 var_Na_Ca_exchanger__Cai)); // microA_per_microF
487 const NekDouble var_sodium_potassium_pump__Ko =
488 var_standard_ionic_concentrations__Ko; // millimolar
489 const NekDouble var_sodium_potassium_pump__K_mNai = 10.0; // millimolar
490 const NekDouble var_sodium_potassium_pump__Nai =
491 var_chaste_interface__intracellular_ion_concentrations__Nai; // millimolar
492 const NekDouble var_sodium_potassium_pump__V =
493 var_chaste_interface__membrane__V; // millivolt
494 const NekDouble var_sodium_potassium_pump__F =
495 var_membrane__F; // coulomb_per_millimole
496 const NekDouble var_sodium_potassium_pump__T =
497 var_membrane__T; // kelvin
498 const NekDouble var_sodium_potassium_pump__Nao =
499 var_standard_ionic_concentrations__Nao; // millimolar
500 const NekDouble var_sodium_potassium_pump__sigma =
501 (1.0 / 7.0) *
502 (exp(var_sodium_potassium_pump__Nao / 67.3) - 1.0); // dimensionless
503 const NekDouble var_sodium_potassium_pump__R =
504 var_membrane__R; // joule_per_mole_kelvin
505 const NekDouble var_sodium_potassium_pump__f_NaK =
506 1.0 / (1.0 +
507 (0.1245 * exp(((-0.1) * var_sodium_potassium_pump__V *
508 var_sodium_potassium_pump__F) /
509 (var_sodium_potassium_pump__R *
510 var_sodium_potassium_pump__T))) +
511 (0.0365 * var_sodium_potassium_pump__sigma *
512 exp(((-var_sodium_potassium_pump__V) *
513 var_sodium_potassium_pump__F) /
514 (var_sodium_potassium_pump__R *
515 var_sodium_potassium_pump__T)))); // dimensionless
516 const NekDouble var_sodium_potassium_pump__I_NaK =
517 0.693; // microA_per_microF
518 const NekDouble var_sodium_potassium_pump__K_mKo = 1.5; // millimolar
519 const NekDouble var_sodium_potassium_pump__i_NaK =
520 (((var_sodium_potassium_pump__I_NaK *
521 var_sodium_potassium_pump__f_NaK) /
522 (1.0 + pow(var_sodium_potassium_pump__K_mNai /
523 var_sodium_potassium_pump__Nai,
524 1.5))) *
525 var_sodium_potassium_pump__Ko) /
526 (var_sodium_potassium_pump__Ko +
527 var_sodium_potassium_pump__K_mKo); // microA_per_microF
528 const NekDouble var_sarcolemmal_calcium_pump__I_pCa =
529 0.05; // microA_per_microF
530 const NekDouble var_sarcolemmal_calcium_pump__Cai =
531 var_chaste_interface__intracellular_ion_concentrations__Cai; // millimolar
532 const NekDouble var_sarcolemmal_calcium_pump__K_mpCa =
533 5e-05; // millimolar
534 const NekDouble var_sarcolemmal_calcium_pump__i_p_Ca =
535 (var_sarcolemmal_calcium_pump__I_pCa *
536 var_sarcolemmal_calcium_pump__Cai) /
537 (var_sarcolemmal_calcium_pump__K_mpCa +
538 var_sarcolemmal_calcium_pump__Cai); // microA_per_microF
539 const NekDouble var_calcium_background_current__R =
540 var_membrane__R; // joule_per_mole_kelvin
541 const NekDouble var_calcium_background_current__Cai =
542 var_chaste_interface__intracellular_ion_concentrations__Cai; // millimolar
543 const NekDouble var_calcium_background_current__F =
544 var_membrane__F; // coulomb_per_millimole
545 const NekDouble var_calcium_background_current__T =
546 var_membrane__T; // kelvin
547 const NekDouble var_calcium_background_current__Cao =
548 var_standard_ionic_concentrations__Cao; // millimolar
549 const NekDouble var_calcium_background_current__E_Ca =
550 ((var_calcium_background_current__R *
551 var_calcium_background_current__T) /
552 (2.0 * var_calcium_background_current__F)) *
553 log(var_calcium_background_current__Cao /
554 var_calcium_background_current__Cai); // millivolt
555 const NekDouble var_calcium_background_current__g_Cab =
556 0.0003842; // milliS_per_microF
557 const NekDouble var_calcium_background_current__V =
558 var_chaste_interface__membrane__V; // millivolt
559 const NekDouble var_calcium_background_current__i_Ca_b =
560 var_calcium_background_current__g_Cab *
561 (var_calcium_background_current__V -
562 var_calcium_background_current__E_Ca); // microA_per_microF
563 const NekDouble var_sodium_background_current__g_Nab =
564 0.0031; // milliS_per_microF
565 const NekDouble var_sodium_background_current__V =
566 var_chaste_interface__membrane__V; // millivolt
567 const NekDouble var_sodium_background_current__E_Na =
568 var_fast_sodium_current__E_Na; // millivolt
569 const NekDouble var_sodium_background_current__i_Na_b =
570 var_sodium_background_current__g_Nab *
571 (var_sodium_background_current__V -
572 var_sodium_background_current__E_Na); // microA_per_microF
573 const NekDouble var_fast_sodium_current_m_gate__V =
574 var_fast_sodium_current__V; // millivolt
575 const NekDouble var_fast_sodium_current_m_gate__beta_m =
576 80.0 *
577 exp((-var_fast_sodium_current_m_gate__V) / 11.0); // per_second
578 const NekDouble var_fast_sodium_current_m_gate__E0_m =
579 var_fast_sodium_current_m_gate__V + 47.13; // millivolt
580 const NekDouble var_fast_sodium_current_m_gate__alpha_m =
581 (fabs(var_fast_sodium_current_m_gate__E0_m) < 1e-05)
582 ? (1000.0 /
583 (0.1 - (0.005 * var_fast_sodium_current_m_gate__E0_m)))
584 : ((320.0 * var_fast_sodium_current_m_gate__E0_m) /
585 (1.0 -
586 exp((-0.1) *
587 var_fast_sodium_current_m_gate__E0_m))); // per_second
588 const NekDouble var_fast_sodium_current_m_gate__m =
589 var_fast_sodium_current__m; // dimensionless
590 const NekDouble
591 var_fast_sodium_current_m_gate__d_m_d_environment__time =
592 (var_fast_sodium_current_m_gate__V >= (-90.0))
593 ? ((var_fast_sodium_current_m_gate__alpha_m *
594 (1.0 - var_fast_sodium_current_m_gate__m)) -
595 (var_fast_sodium_current_m_gate__beta_m *
596 var_fast_sodium_current_m_gate__m))
597 : 0.0; // per_second
598 const NekDouble
599 var_fast_sodium_current__fast_sodium_current_m_gate__d_m_d_environment__time =
600 var_fast_sodium_current_m_gate__d_m_d_environment__time; // per_second
601 const NekDouble var_fast_sodium_current_h_gate__V =
602 var_fast_sodium_current__V; // millivolt
603 const NekDouble var_fast_sodium_current_h_gate__beta_h =
604 (var_fast_sodium_current_h_gate__V < (-40.0))
605 ? ((3560.0 * exp(0.079 * var_fast_sodium_current_h_gate__V)) +
606 (310000.0 * exp(0.35 * var_fast_sodium_current_h_gate__V)))
607 : (1000.0 /
608 (0.13 *
609 (1.0 + exp((var_fast_sodium_current_h_gate__V + 10.66) /
610 (-11.1))))); // per_second
611 const NekDouble var_fast_sodium_current_h_gate__alpha_h =
612 (var_fast_sodium_current_h_gate__V < (-40.0))
613 ? (135.0 *
614 exp((80.0 + var_fast_sodium_current_h_gate__V) / (-6.8)))
615 : 0.0; // per_second
616 const NekDouble var_fast_sodium_current_h_gate__h =
617 var_fast_sodium_current__h; // dimensionless
618 const NekDouble
619 var_fast_sodium_current_h_gate__d_h_d_environment__time =
620 (var_fast_sodium_current_h_gate__alpha_h *
621 (1.0 - var_fast_sodium_current_h_gate__h)) -
622 (var_fast_sodium_current_h_gate__beta_h *
623 var_fast_sodium_current_h_gate__h); // per_second
624 const NekDouble
625 var_fast_sodium_current__fast_sodium_current_h_gate__d_h_d_environment__time =
626 var_fast_sodium_current_h_gate__d_h_d_environment__time; // per_second
627 const NekDouble var_fast_sodium_current_j_gate__V =
628 var_fast_sodium_current__V; // millivolt
629 const NekDouble var_fast_sodium_current_j_gate__alpha_j =
630 (var_fast_sodium_current_j_gate__V < (-40.0))
631 ? ((1000.0 *
632 (-((127140.0 *
633 exp(0.2444 * var_fast_sodium_current_j_gate__V)) +
634 (3.474e-05 *
635 exp((-0.04391) * var_fast_sodium_current_j_gate__V)))) *
636 (var_fast_sodium_current_j_gate__V + 37.78)) /
637 (1.0 +
638 exp(0.311 * (var_fast_sodium_current_j_gate__V + 79.23))))
639 : 0.0; // per_second
640 const NekDouble var_fast_sodium_current_j_gate__beta_j =
641 (var_fast_sodium_current_j_gate__V < (-40.0))
642 ? ((121.2 *
643 exp((-0.01052) * var_fast_sodium_current_j_gate__V)) /
644 (1.0 + exp((-0.1378) *
645 (var_fast_sodium_current_j_gate__V + 40.14))))
646 : ((300.0 *
647 exp((-2.535e-07) * var_fast_sodium_current_j_gate__V)) /
648 (1.0 + exp((-0.1) * (var_fast_sodium_current_j_gate__V +
649 32.0)))); // per_second
650 const NekDouble var_fast_sodium_current_j_gate__j =
651 var_fast_sodium_current__j; // dimensionless
652 const NekDouble
653 var_fast_sodium_current_j_gate__d_j_d_environment__time =
654 (var_fast_sodium_current_j_gate__alpha_j *
655 (1.0 - var_fast_sodium_current_j_gate__j)) -
656 (var_fast_sodium_current_j_gate__beta_j *
657 var_fast_sodium_current_j_gate__j); // per_second
658 const NekDouble
659 var_fast_sodium_current__fast_sodium_current_j_gate__d_j_d_environment__time =
660 var_fast_sodium_current_j_gate__d_j_d_environment__time; // per_second
661 const NekDouble
662 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__tau_factor =
663 1.0; // dimensionless
664 const NekDouble
665 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__V =
666 var_rapid_activating_delayed_rectifiyer_K_current__V; // millivolt
667 const NekDouble
668 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K21 = exp(
669 (-7.677) -
670 (0.0128 *
671 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__V)); // dimensionless
672 const NekDouble
673 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K12 = exp(
674 (-5.495) +
675 (0.1691 *
676 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__V)); // dimensionless
677 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__tau_X_kr =
678 (0.001 /
679 (var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K12 +
680 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K21)) +
681 (var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__tau_factor *
682 0.027); // second
683 const NekDouble
684 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr =
685 var_rapid_activating_delayed_rectifiyer_K_current__X_kr; // dimensionless
686 const NekDouble
687 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr_inf =
688 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K12 /
689 (var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K12 +
690 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__K21); // dimensionless
691 const NekDouble var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time =
692 (var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr_inf -
693 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr) /
694 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__tau_X_kr; // per_second
695 const NekDouble
696 var_rapid_activating_delayed_rectifiyer_K_current__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time =
697 var_rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time; // per_second
698 const NekDouble
699 var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__V =
700 var_slow_activating_delayed_rectifiyer_K_current__V; // millivolt
701 const NekDouble var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__tau_X_ks =
702 0.001 /
703 (((7.19e-05 *
704 (var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__V -
705 10.0)) /
706 (1.0 -
707 exp((-0.148) *
708 (var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__V -
709 10.0)))) +
710 ((0.000131 *
711 (var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__V -
712 10.0)) /
713 (exp(0.0687 *
714 (var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__V -
715 10.0)) -
716 1.0))); // second
717 const NekDouble
718 var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks_infinity =
719 1.0 /
720 (1.0 +
721 exp((-(var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__V -
722 24.7)) /
723 13.6)); // dimensionless
724 const NekDouble
725 var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks =
726 var_slow_activating_delayed_rectifiyer_K_current__X_ks; // dimensionless
727 const NekDouble var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time =
728 (var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks_infinity -
729 var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks) /
730 var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__tau_X_ks; // per_second
731 const NekDouble
732 var_slow_activating_delayed_rectifiyer_K_current__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time =
733 var_slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time; // per_second
734 const NekDouble var_transient_outward_potassium_current_X_to1_gate__V =
735 var_transient_outward_potassium_current__V; // millivolt
736 const NekDouble
737 var_transient_outward_potassium_current_X_to1_gate__alpha_X_to1 =
738 45.16 *
739 exp(0.03577 *
740 var_transient_outward_potassium_current_X_to1_gate__V); // per_second
741 const NekDouble
742 var_transient_outward_potassium_current_X_to1_gate__X_to1 =
743 var_transient_outward_potassium_current__X_to1; // dimensionless
744 const NekDouble
745 var_transient_outward_potassium_current_X_to1_gate__beta_X_to1 =
746 98.9 *
747 exp((-0.06237) *
748 var_transient_outward_potassium_current_X_to1_gate__V); // per_second
749 const NekDouble
750 var_transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time =
751 (var_transient_outward_potassium_current_X_to1_gate__alpha_X_to1 *
752 (1.0 -
753 var_transient_outward_potassium_current_X_to1_gate__X_to1)) -
754 (var_transient_outward_potassium_current_X_to1_gate__beta_X_to1 *
755 var_transient_outward_potassium_current_X_to1_gate__X_to1); // per_second
756 const NekDouble
757 var_transient_outward_potassium_current__transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time =
758 var_transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time; // per_second
759 const NekDouble var_transient_outward_potassium_current_Y_to1_gate__V =
760 var_transient_outward_potassium_current__V; // millivolt
761 const NekDouble
762 var_transient_outward_potassium_current_Y_to1_gate__alpha_Y_to1 =
763 (5.415 *
764 exp((-(var_transient_outward_potassium_current_Y_to1_gate__V +
765 33.5)) /
766 5.0)) /
767 (1.0 +
768 (0.051335 *
769 exp((-(var_transient_outward_potassium_current_Y_to1_gate__V +
770 33.5)) /
771 5.0))); // per_second
772 const NekDouble
773 var_transient_outward_potassium_current_Y_to1_gate__Y_to1 =
774 var_transient_outward_potassium_current__Y_to1; // dimensionless
775 const NekDouble
776 var_transient_outward_potassium_current_Y_to1_gate__beta_Y_to1 =
777 (5.415 *
778 exp((var_transient_outward_potassium_current_Y_to1_gate__V +
779 33.5) /
780 5.0)) /
781 (1.0 +
782 (0.051335 *
783 exp((var_transient_outward_potassium_current_Y_to1_gate__V +
784 33.5) /
785 5.0))); // per_second
786 const NekDouble
787 var_transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time =
788 (var_transient_outward_potassium_current_Y_to1_gate__alpha_Y_to1 *
789 (1.0 -
790 var_transient_outward_potassium_current_Y_to1_gate__Y_to1)) -
791 (var_transient_outward_potassium_current_Y_to1_gate__beta_Y_to1 *
792 var_transient_outward_potassium_current_Y_to1_gate__Y_to1); // per_second
793 const NekDouble
794 var_transient_outward_potassium_current__transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time =
795 var_transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time; // per_second
796 const NekDouble var_L_type_Ca_current__alpha =
797 400.0 * exp((var_L_type_Ca_current__V + 2.0) / 10.0); // per_second
798 const NekDouble var_L_type_Ca_current__beta =
799 50.0 *
800 exp((-(var_L_type_Ca_current__V + 2.0)) / 13.0); // per_second
801 const NekDouble var_L_type_Ca_current__Ca_ss =
802 var_chaste_interface__intracellular_ion_concentrations__Ca_ss; // millimolar
803 const NekDouble var_L_type_Ca_current__gamma =
804 (103.75 * var_L_type_Ca_current__Ca_ss) / 1.0; // per_second
805 const NekDouble var_L_type_Ca_current__a = 2.0; // dimensionless
806 const NekDouble var_L_type_Ca_current__alpha_a =
807 var_L_type_Ca_current__alpha *
808 var_L_type_Ca_current__a; // per_second
809 const NekDouble var_L_type_Ca_current__b = 2.0; // dimensionless
810 const NekDouble var_L_type_Ca_current__beta_b =
811 var_L_type_Ca_current__beta /
812 var_L_type_Ca_current__b; // per_second
813 const NekDouble var_L_type_Ca_current__g = 2000.0; // per_second
814 const NekDouble var_L_type_Ca_current__f = 300.0; // per_second
815 const NekDouble var_L_type_Ca_current__gprime = 7000.0; // per_second
816 const NekDouble var_L_type_Ca_current__fprime = 7.0; // per_second
817 const NekDouble var_L_type_Ca_current__omega = 10.0; // per_second
818 const NekDouble var_L_type_Ca_current__C0 =
819 var_chaste_interface__L_type_Ca_current__C0; // dimensionless
820 const NekDouble var_L_type_Ca_current__C1 =
821 var_chaste_interface__L_type_Ca_current__C1; // dimensionless
822 const NekDouble var_L_type_Ca_current__C2 =
823 var_chaste_interface__L_type_Ca_current__C2; // dimensionless
824 const NekDouble var_L_type_Ca_current__C3 =
825 var_chaste_interface__L_type_Ca_current__C3; // dimensionless
826 const NekDouble var_L_type_Ca_current__C4 =
827 var_chaste_interface__L_type_Ca_current__C4; // dimensionless
828 const NekDouble var_L_type_Ca_current__C_Ca0 =
829 var_chaste_interface__L_type_Ca_current__C_Ca0; // dimensionless
830 const NekDouble var_L_type_Ca_current__C_Ca1 =
831 var_chaste_interface__L_type_Ca_current__C_Ca1; // dimensionless
832 const NekDouble var_L_type_Ca_current__C_Ca2 =
833 var_chaste_interface__L_type_Ca_current__C_Ca2; // dimensionless
834 const NekDouble var_L_type_Ca_current__C_Ca3 =
835 var_chaste_interface__L_type_Ca_current__C_Ca3; // dimensionless
836 const NekDouble var_L_type_Ca_current__C_Ca4 =
837 var_chaste_interface__L_type_Ca_current__C_Ca4; // dimensionless
838 const NekDouble var_L_type_Ca_current__d_O_d_environment__time =
839 (var_L_type_Ca_current__f * var_L_type_Ca_current__C4) -
840 (var_L_type_Ca_current__g * var_L_type_Ca_current__O); // per_second
841 const NekDouble var_L_type_Ca_current__d_O_Ca_d_environment__time =
842 (var_L_type_Ca_current__fprime * var_L_type_Ca_current__C_Ca4) -
843 (var_L_type_Ca_current__gprime *
844 var_L_type_Ca_current__O_Ca); // per_second
845 const NekDouble var_L_type_Ca_current__d_C0_d_environment__time =
846 ((var_L_type_Ca_current__beta * var_L_type_Ca_current__C1) +
847 (var_L_type_Ca_current__omega * var_L_type_Ca_current__C_Ca0)) -
848 (((4.0 * var_L_type_Ca_current__alpha) +
849 var_L_type_Ca_current__gamma) *
850 var_L_type_Ca_current__C0); // per_second
851 const NekDouble var_L_type_Ca_current__d_C1_d_environment__time =
852 ((4.0 * var_L_type_Ca_current__alpha * var_L_type_Ca_current__C0) +
853 (2.0 * var_L_type_Ca_current__beta * var_L_type_Ca_current__C2) +
854 ((var_L_type_Ca_current__omega / var_L_type_Ca_current__b) *
855 var_L_type_Ca_current__C_Ca1)) -
856 ((var_L_type_Ca_current__beta +
857 (3.0 * var_L_type_Ca_current__alpha) +
858 (var_L_type_Ca_current__gamma * var_L_type_Ca_current__a)) *
859 var_L_type_Ca_current__C1); // per_second
860 const NekDouble var_L_type_Ca_current__d_C2_d_environment__time =
861 ((3.0 * var_L_type_Ca_current__alpha * var_L_type_Ca_current__C1) +
862 (3.0 * var_L_type_Ca_current__beta * var_L_type_Ca_current__C3) +
863 ((var_L_type_Ca_current__omega /
864 pow(var_L_type_Ca_current__b, 2.0)) *
865 var_L_type_Ca_current__C_Ca2)) -
866 (((var_L_type_Ca_current__beta * 2.0) +
867 (2.0 * var_L_type_Ca_current__alpha) +
868 (var_L_type_Ca_current__gamma *
869 pow(var_L_type_Ca_current__a, 2.0))) *
870 var_L_type_Ca_current__C2); // per_second
871 const NekDouble var_L_type_Ca_current__d_C3_d_environment__time =
872 ((2.0 * var_L_type_Ca_current__alpha * var_L_type_Ca_current__C2) +
873 (4.0 * var_L_type_Ca_current__beta * var_L_type_Ca_current__C4) +
874 ((var_L_type_Ca_current__omega /
875 pow(var_L_type_Ca_current__b, 3.0)) *
876 var_L_type_Ca_current__C_Ca3)) -
877 (((var_L_type_Ca_current__beta * 3.0) +
878 var_L_type_Ca_current__alpha +
879 (var_L_type_Ca_current__gamma *
880 pow(var_L_type_Ca_current__a, 3.0))) *
881 var_L_type_Ca_current__C3); // per_second
882 const NekDouble var_L_type_Ca_current__d_C4_d_environment__time =
883 ((var_L_type_Ca_current__alpha * var_L_type_Ca_current__C3) +
884 (var_L_type_Ca_current__g * var_L_type_Ca_current__O) +
885 ((var_L_type_Ca_current__omega /
886 pow(var_L_type_Ca_current__b, 4.0)) *
887 var_L_type_Ca_current__C_Ca4)) -
888 (((var_L_type_Ca_current__beta * 4.0) + var_L_type_Ca_current__f +
889 (var_L_type_Ca_current__gamma *
890 pow(var_L_type_Ca_current__a, 4.0))) *
891 var_L_type_Ca_current__C4); // per_second
892 const NekDouble var_L_type_Ca_current__d_C_Ca0_d_environment__time =
893 ((var_L_type_Ca_current__beta_b * var_L_type_Ca_current__C_Ca1) +
894 (var_L_type_Ca_current__gamma * var_L_type_Ca_current__C0)) -
895 (((4.0 * var_L_type_Ca_current__alpha_a) +
896 var_L_type_Ca_current__omega) *
897 var_L_type_Ca_current__C_Ca0); // per_second
898 const NekDouble var_L_type_Ca_current__d_C_Ca1_d_environment__time =
899 ((4.0 * var_L_type_Ca_current__alpha_a *
900 var_L_type_Ca_current__C_Ca0) +
901 (2.0 * var_L_type_Ca_current__beta_b *
902 var_L_type_Ca_current__C_Ca2) +
903 (var_L_type_Ca_current__gamma * var_L_type_Ca_current__a *
904 var_L_type_Ca_current__C1)) -
905 ((var_L_type_Ca_current__beta_b +
906 (3.0 * var_L_type_Ca_current__alpha_a) +
907 (var_L_type_Ca_current__omega / var_L_type_Ca_current__b)) *
908 var_L_type_Ca_current__C_Ca1); // per_second
909 const NekDouble var_L_type_Ca_current__d_C_Ca2_d_environment__time =
910 ((3.0 * var_L_type_Ca_current__alpha_a *
911 var_L_type_Ca_current__C_Ca1) +
912 (3.0 * var_L_type_Ca_current__beta_b *
913 var_L_type_Ca_current__C_Ca3) +
914 (var_L_type_Ca_current__gamma *
915 pow(var_L_type_Ca_current__a, 2.0) * var_L_type_Ca_current__C2)) -
916 (((var_L_type_Ca_current__beta_b * 2.0) +
917 (2.0 * var_L_type_Ca_current__alpha_a) +
918 (var_L_type_Ca_current__omega /
919 pow(var_L_type_Ca_current__b, 2.0))) *
920 var_L_type_Ca_current__C_Ca2); // per_second
921 const NekDouble var_L_type_Ca_current__d_C_Ca3_d_environment__time =
922 ((2.0 * var_L_type_Ca_current__alpha_a *
923 var_L_type_Ca_current__C_Ca2) +
924 (4.0 * var_L_type_Ca_current__beta_b *
925 var_L_type_Ca_current__C_Ca4) +
926 (var_L_type_Ca_current__gamma *
927 pow(var_L_type_Ca_current__a, 3.0) * var_L_type_Ca_current__C3)) -
928 (((var_L_type_Ca_current__beta_b * 3.0) +
929 var_L_type_Ca_current__alpha_a +
930 (var_L_type_Ca_current__omega /
931 pow(var_L_type_Ca_current__b, 3.0))) *
932 var_L_type_Ca_current__C_Ca3); // per_second
933 const NekDouble var_L_type_Ca_current__d_C_Ca4_d_environment__time =
934 ((var_L_type_Ca_current__alpha_a * var_L_type_Ca_current__C_Ca3) +
935 (var_L_type_Ca_current__gprime * var_L_type_Ca_current__O_Ca) +
936 (var_L_type_Ca_current__gamma *
937 pow(var_L_type_Ca_current__a, 4.0) * var_L_type_Ca_current__C4)) -
938 (((var_L_type_Ca_current__beta_b * 4.0) +
939 var_L_type_Ca_current__fprime +
940 (var_L_type_Ca_current__omega /
941 pow(var_L_type_Ca_current__b, 4.0))) *
942 var_L_type_Ca_current__C_Ca4); // per_second
943 const NekDouble var_L_type_Ca_current_y_gate__y =
944 var_L_type_Ca_current__y; // dimensionless
945 const NekDouble var_L_type_Ca_current_y_gate__V =
946 var_L_type_Ca_current__V; // millivolt
947 const NekDouble var_L_type_Ca_current_y_gate__y_infinity =
948 (0.8 /
949 (1.0 + exp((var_L_type_Ca_current_y_gate__V + 12.5) / 5.0))) +
950 0.2; // dimensionless
951 const NekDouble var_L_type_Ca_current_y_gate__tau_y =
952 (20.0 +
953 (600.0 /
954 (1.0 + exp((var_L_type_Ca_current_y_gate__V + 20.0) / 9.5)))) /
955 1000.0; // second
956 const NekDouble var_L_type_Ca_current_y_gate__d_y_d_environment__time =
957 (var_L_type_Ca_current_y_gate__y_infinity -
958 var_L_type_Ca_current_y_gate__y) /
959 var_L_type_Ca_current_y_gate__tau_y; // per_second
960 const NekDouble
961 var_L_type_Ca_current__L_type_Ca_current_y_gate__d_y_d_environment__time =
962 var_L_type_Ca_current_y_gate__d_y_d_environment__time; // per_second
963 const NekDouble var_RyR_channel__P_O2 =
964 var_chaste_interface__RyR_channel__P_O2; // dimensionless
965 const NekDouble var_RyR_channel__Ca_ss =
966 var_chaste_interface__intracellular_ion_concentrations__Ca_ss; // millimolar
967 const NekDouble var_RyR_channel__P_O1 =
968 var_chaste_interface__RyR_channel__P_O1; // dimensionless
969 const NekDouble var_RyR_channel__v1 = 1800.0; // per_second
970 const NekDouble var_RyR_channel__Ca_JSR =
971 var_chaste_interface__intracellular_ion_concentrations__Ca_JSR; // millimolar
972 const NekDouble var_RyR_channel__J_rel =
973 var_RyR_channel__v1 *
974 (var_RyR_channel__P_O1 + var_RyR_channel__P_O2) *
975 (var_RyR_channel__Ca_JSR -
976 var_RyR_channel__Ca_ss); // millimolar_per_second
977 const NekDouble var_RyR_channel__k_a_plus =
978 1.215e+13; // millimolar4_per_second
979 const NekDouble var_RyR_channel__k_a_minus = 576.0; // per_second
980 const NekDouble var_RyR_channel__k_b_plus =
981 4050000000.0; // millimolar3_per_second
982 const NekDouble var_RyR_channel__k_b_minus = 1930.0; // per_second
983 const NekDouble var_RyR_channel__k_c_plus = 100.0; // per_second
984 const NekDouble var_RyR_channel__k_c_minus = 0.8; // per_second
985 const NekDouble var_RyR_channel__P_C1 =
986 var_chaste_interface__RyR_channel__P_C1; // dimensionless
987 const NekDouble var_RyR_channel__P_C2 =
988 var_chaste_interface__RyR_channel__P_C2; // dimensionless
989 const NekDouble var_RyR_channel__n = 4.0; // dimensionless
990 const NekDouble var_RyR_channel__m = 3.0; // dimensionless
991 const NekDouble var_RyR_channel__d_P_O1_d_environment__time =
992 ((var_RyR_channel__k_a_plus *
993 pow(var_RyR_channel__Ca_ss, var_RyR_channel__n) *
994 var_RyR_channel__P_C1) -
995 ((var_RyR_channel__k_a_minus * var_RyR_channel__P_O1) +
996 (var_RyR_channel__k_b_plus *
997 pow(var_RyR_channel__Ca_ss, var_RyR_channel__m) *
998 var_RyR_channel__P_O1) +
999 (var_RyR_channel__k_c_plus * var_RyR_channel__P_O1))) +
1000 (var_RyR_channel__k_b_minus * var_RyR_channel__P_O2) +
1001 (var_RyR_channel__k_c_minus * var_RyR_channel__P_C2); // per_second
1002 const NekDouble var_RyR_channel__d_P_O2_d_environment__time =
1003 (var_RyR_channel__k_b_plus *
1004 pow(var_RyR_channel__Ca_ss, var_RyR_channel__m) *
1005 var_RyR_channel__P_O1) -
1006 (var_RyR_channel__k_b_minus * var_RyR_channel__P_O2); // per_second
1007 const NekDouble var_RyR_channel__d_P_C1_d_environment__time =
1008 ((-var_RyR_channel__k_a_plus) *
1009 pow(var_RyR_channel__Ca_ss, var_RyR_channel__n) *
1010 var_RyR_channel__P_C1) +
1011 (var_RyR_channel__k_a_minus * var_RyR_channel__P_O1); // per_second
1012 const NekDouble var_RyR_channel__d_P_C2_d_environment__time =
1013 (var_RyR_channel__k_c_plus * var_RyR_channel__P_O1) -
1014 (var_RyR_channel__k_c_minus * var_RyR_channel__P_C2); // per_second
1015 const NekDouble var_SERCA2a_pump__Cai =
1016 var_chaste_interface__intracellular_ion_concentrations__Cai; // millimolar
1017 const NekDouble var_SERCA2a_pump__N_fb = 1.2; // dimensionless
1018 const NekDouble var_SERCA2a_pump__K_fb = 0.000168; // millimolar
1019 const NekDouble var_SERCA2a_pump__fb =
1020 pow(var_SERCA2a_pump__Cai / var_SERCA2a_pump__K_fb,
1021 var_SERCA2a_pump__N_fb); // dimensionless
1022 const NekDouble var_SERCA2a_pump__Vmaxf =
1023 0.0813; // millimolar_per_second
1024 const NekDouble var_SERCA2a_pump__K_SR = 1.0; // dimensionless
1025 const NekDouble var_SERCA2a_pump__Ca_NSR =
1026 var_chaste_interface__intracellular_ion_concentrations__Ca_NSR; // millimolar
1027 const NekDouble var_SERCA2a_pump__K_rb = 3.29; // millimolar
1028 const NekDouble var_SERCA2a_pump__N_rb = 1.0; // dimensionless
1029 const NekDouble var_SERCA2a_pump__rb =
1030 pow(var_SERCA2a_pump__Ca_NSR / var_SERCA2a_pump__K_rb,
1031 var_SERCA2a_pump__N_rb); // dimensionless
1032 const NekDouble var_SERCA2a_pump__Vmaxr =
1033 0.318; // millimolar_per_second
1034 const NekDouble var_SERCA2a_pump__J_up =
1035 (var_SERCA2a_pump__K_SR *
1036 ((var_SERCA2a_pump__Vmaxf * var_SERCA2a_pump__fb) -
1037 (var_SERCA2a_pump__Vmaxr * var_SERCA2a_pump__rb))) /
1038 (1.0 + var_SERCA2a_pump__fb +
1039 var_SERCA2a_pump__rb); // millimolar_per_second
1040 const NekDouble var_intracellular_Ca_fluxes__Ca_NSR =
1041 var_chaste_interface__intracellular_ion_concentrations__Ca_NSR; // millimolar
1042 const NekDouble var_intracellular_Ca_fluxes__Ca_JSR =
1043 var_chaste_interface__intracellular_ion_concentrations__Ca_JSR; // millimolar
1044 const NekDouble var_intracellular_Ca_fluxes__tau_tr =
1045 0.0005747; // second
1046 const NekDouble var_intracellular_Ca_fluxes__J_tr =
1047 (var_intracellular_Ca_fluxes__Ca_NSR -
1048 var_intracellular_Ca_fluxes__Ca_JSR) /
1049 var_intracellular_Ca_fluxes__tau_tr; // millimolar_per_second
1050 const NekDouble var_intracellular_Ca_fluxes__Cai =
1051 var_chaste_interface__intracellular_ion_concentrations__Cai; // millimolar
1052 const NekDouble var_intracellular_Ca_fluxes__tau_xfer =
1053 0.0267; // second
1054 const NekDouble var_intracellular_Ca_fluxes__Ca_ss =
1055 var_chaste_interface__intracellular_ion_concentrations__Ca_ss; // millimolar
1056 const NekDouble var_intracellular_Ca_fluxes__J_xfer =
1057 (var_intracellular_Ca_fluxes__Ca_ss -
1058 var_intracellular_Ca_fluxes__Cai) /
1059 var_intracellular_Ca_fluxes__tau_xfer; // millimolar_per_second
1060 const NekDouble var_intracellular_Ca_fluxes__k_htrpn_minus =
1061 0.066; // per_second
1062 const NekDouble var_intracellular_Ca_fluxes__k_htrpn_plus =
1063 20000.0; // per_millimolar_second
1064 const NekDouble var_intracellular_Ca_fluxes__HTRPNCa =
1065 var_chaste_interface__intracellular_Ca_fluxes__HTRPNCa; // millimolar
1066 const NekDouble
1067 var_intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time =
1068 (var_intracellular_Ca_fluxes__k_htrpn_plus *
1069 var_intracellular_Ca_fluxes__Cai *
1070 (1.0 - var_intracellular_Ca_fluxes__HTRPNCa)) -
1071 (var_intracellular_Ca_fluxes__k_htrpn_minus *
1072 var_intracellular_Ca_fluxes__HTRPNCa); // 'millimole per litre
1073 // per second'
1074 const NekDouble var_intracellular_Ca_fluxes__J_HTRPNCa =
1075 var_intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time; // millimolar_per_second
1076 const NekDouble var_intracellular_Ca_fluxes__LTRPN_tot =
1077 0.07; // dimensionless
1078 const NekDouble var_intracellular_Ca_fluxes__LTRPNCa =
1079 var_chaste_interface__intracellular_Ca_fluxes__LTRPNCa; // millimolar
1080 const NekDouble var_intracellular_Ca_fluxes__k_ltrpn_minus =
1081 40.0; // per_second
1082 const NekDouble var_intracellular_Ca_fluxes__k_ltrpn_plus =
1083 40000.0; // per_millimolar_second
1084 const NekDouble
1085 var_intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time =
1086 (var_intracellular_Ca_fluxes__k_ltrpn_plus *
1087 var_intracellular_Ca_fluxes__Cai *
1088 (1.0 - var_intracellular_Ca_fluxes__LTRPNCa)) -
1089 (var_intracellular_Ca_fluxes__k_ltrpn_minus *
1090 var_intracellular_Ca_fluxes__LTRPNCa); // 'millimole per litre
1091 // per second'
1092 const NekDouble var_intracellular_Ca_fluxes__J_LTRPNCa =
1093 var_intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time; // millimolar_per_second
1094 const NekDouble var_intracellular_Ca_fluxes__HTRPN_tot =
1095 0.14; // dimensionless
1096 const NekDouble var_intracellular_Ca_fluxes__J_trpn =
1097 (var_intracellular_Ca_fluxes__HTRPN_tot *
1098 var_intracellular_Ca_fluxes__J_HTRPNCa) +
1099 (var_intracellular_Ca_fluxes__LTRPN_tot *
1100 var_intracellular_Ca_fluxes__J_LTRPNCa); // millimolar_per_second
1101 const NekDouble var_intracellular_ion_concentrations__Cai =
1102 var_chaste_interface__intracellular_ion_concentrations__Cai; // millimolar
1103 const NekDouble var_intracellular_ion_concentrations__Ca_ss =
1104 var_chaste_interface__intracellular_ion_concentrations__Ca_ss; // millimolar
1105 const NekDouble var_intracellular_ion_concentrations__Ca_JSR =
1106 var_chaste_interface__intracellular_ion_concentrations__Ca_JSR; // millimolar
1107 const NekDouble var_intracellular_ion_concentrations__A_cap =
1108 0.0001534; // cm2
1109 const NekDouble var_intracellular_ion_concentrations__V_myo =
1110 2.584e-05; // micro_litre
1111 const NekDouble var_intracellular_ion_concentrations__V_JSR =
1112 1.6e-07; // micro_litre
1113 const NekDouble var_intracellular_ion_concentrations__V_NSR =
1114 2.1e-06; // micro_litre
1115 const NekDouble var_intracellular_ion_concentrations__V_SS =
1116 1.2e-09; // micro_litre
1117 const NekDouble var_intracellular_ion_concentrations__K_mCMDN =
1118 0.00238; // millimolar
1119 const NekDouble var_intracellular_ion_concentrations__K_mEGTA =
1120 0.00015; // millimolar
1121 const NekDouble var_intracellular_ion_concentrations__K_mCSQN =
1122 0.8; // millimolar
1123 const NekDouble var_intracellular_ion_concentrations__CMDN_tot =
1124 0.05; // millimolar
1125 const NekDouble var_intracellular_ion_concentrations__EGTA_tot =
1126 0.0; // millimolar
1127 const NekDouble var_intracellular_ion_concentrations__CSQN_tot =
1128 15.0; // millimolar
1129 const NekDouble var_intracellular_ion_concentrations__beta_i =
1130 1.0 / (1.0 +
1131 ((var_intracellular_ion_concentrations__CMDN_tot *
1132 var_intracellular_ion_concentrations__K_mCMDN) /
1133 pow(var_intracellular_ion_concentrations__K_mCMDN +
1134 var_intracellular_ion_concentrations__Cai,
1135 2.0)) +
1136 ((var_intracellular_ion_concentrations__EGTA_tot *
1137 var_intracellular_ion_concentrations__K_mEGTA) /
1138 pow(var_intracellular_ion_concentrations__K_mEGTA +
1139 var_intracellular_ion_concentrations__Cai,
1140 2.0))); // dimensionless
1141 const NekDouble var_intracellular_ion_concentrations__beta_SS =
1142 1.0 / (1.0 +
1143 ((var_intracellular_ion_concentrations__CMDN_tot *
1144 var_intracellular_ion_concentrations__K_mCMDN) /
1145 pow(var_intracellular_ion_concentrations__K_mCMDN +
1146 var_intracellular_ion_concentrations__Ca_ss,
1147 2.0)) +
1148 ((var_intracellular_ion_concentrations__EGTA_tot *
1149 var_intracellular_ion_concentrations__K_mEGTA) /
1150 pow(var_intracellular_ion_concentrations__K_mEGTA +
1151 var_intracellular_ion_concentrations__Ca_ss,
1152 2.0))); // dimensionless
1153 const NekDouble var_intracellular_ion_concentrations__beta_JSR =
1154 1.0 / (1.0 + ((var_intracellular_ion_concentrations__CSQN_tot *
1155 var_intracellular_ion_concentrations__K_mCSQN) /
1156 pow(var_intracellular_ion_concentrations__K_mCSQN +
1157 var_intracellular_ion_concentrations__Ca_JSR,
1158 2.0))); // dimensionless
1159 const NekDouble var_intracellular_ion_concentrations__F =
1160 var_membrane__F; // coulomb_per_millimole
1161 const NekDouble var_intracellular_ion_concentrations__i_Na =
1162 var_fast_sodium_current__i_Na; // microA_per_microF
1163 const NekDouble var_intracellular_ion_concentrations__i_Ca =
1164 var_L_type_Ca_current__i_Ca; // microA_per_microF
1165 const NekDouble var_intracellular_ion_concentrations__i_Na_b =
1166 var_sodium_background_current__i_Na_b; // microA_per_microF
1167 const NekDouble var_intracellular_ion_concentrations__i_NaCa =
1168 var_Na_Ca_exchanger__i_NaCa; // microA_per_microF
1169 const NekDouble var_intracellular_ion_concentrations__i_NaK =
1170 var_sodium_potassium_pump__i_NaK; // microA_per_microF
1171 const NekDouble var_intracellular_ion_concentrations__i_Ca_K =
1172 var_L_type_Ca_current__i_Ca_K; // microA_per_microF
1173 const NekDouble var_intracellular_ion_concentrations__i_Kr =
1174 var_rapid_activating_delayed_rectifiyer_K_current__i_Kr; // microA_per_microF
1175 const NekDouble var_intracellular_ion_concentrations__i_Ks =
1176 var_slow_activating_delayed_rectifiyer_K_current__i_Ks; // microA_per_microF
1177 const NekDouble var_intracellular_ion_concentrations__i_K1 =
1178 var_time_independent_potassium_current__i_K1; // microA_per_microF
1179 const NekDouble var_intracellular_ion_concentrations__i_Kp =
1180 var_plateau_potassium_current__i_Kp; // microA_per_microF
1181 const NekDouble var_intracellular_ion_concentrations__i_to1 =
1182 var_transient_outward_potassium_current__i_to1; // microA_per_microF
1183 const NekDouble var_intracellular_ion_concentrations__i_p_Ca =
1184 var_sarcolemmal_calcium_pump__i_p_Ca; // microA_per_microF
1185 const NekDouble var_intracellular_ion_concentrations__i_Ca_b =
1186 var_calcium_background_current__i_Ca_b; // microA_per_microF
1187 const NekDouble var_intracellular_ion_concentrations__J_up =
1188 var_SERCA2a_pump__J_up; // millimolar_per_second
1189 const NekDouble var_intracellular_ion_concentrations__J_rel =
1190 var_RyR_channel__J_rel; // millimolar_per_second
1191 const NekDouble var_intracellular_ion_concentrations__J_xfer =
1192 var_intracellular_Ca_fluxes__J_xfer; // millimolar_per_second
1193 const NekDouble var_intracellular_ion_concentrations__J_trpn =
1194 var_intracellular_Ca_fluxes__J_trpn; // millimolar_per_second
1195 const NekDouble var_intracellular_ion_concentrations__J_tr =
1196 var_intracellular_Ca_fluxes__J_tr; // millimolar_per_second
1197 const NekDouble
1198 var_intracellular_ion_concentrations__d_Nai_d_environment__time =
1199 ((-0.0) *
1200 (var_intracellular_ion_concentrations__i_Na +
1201 var_intracellular_ion_concentrations__i_Na_b +
1202 (var_intracellular_ion_concentrations__i_NaCa * 3.0) +
1203 (var_intracellular_ion_concentrations__i_NaK * 3.0)) *
1204 var_intracellular_ion_concentrations__A_cap * 1.0) /
1205 (var_intracellular_ion_concentrations__V_myo *
1206 var_intracellular_ion_concentrations__F); // 'millimole per
1207 // litre per second'
1208 const NekDouble
1209 var_intracellular_ion_concentrations__d_Cai_d_environment__time =
1210 var_intracellular_ion_concentrations__beta_i *
1211 ((var_intracellular_ion_concentrations__J_xfer -
1212 (var_intracellular_ion_concentrations__J_up +
1213 var_intracellular_ion_concentrations__J_trpn)) +
1214 ((((2.0 * var_intracellular_ion_concentrations__i_NaCa) -
1215 (var_intracellular_ion_concentrations__i_p_Ca +
1216 var_intracellular_ion_concentrations__i_Ca_b)) *
1217 var_intracellular_ion_concentrations__A_cap * 1.0) /
1218 (2.0 * var_intracellular_ion_concentrations__V_myo *
1219 var_intracellular_ion_concentrations__F))); // 'millimole per
1220 // litre per
1221 // second'
1222 const NekDouble
1223 var_intracellular_ion_concentrations__d_Ki_d_environment__time =
1224 ((-0.0) *
1225 (var_intracellular_ion_concentrations__i_Ca_K +
1226 var_intracellular_ion_concentrations__i_Kr +
1227 var_intracellular_ion_concentrations__i_Ks +
1228 var_intracellular_ion_concentrations__i_K1 +
1229 var_intracellular_ion_concentrations__i_Kp +
1230 var_intracellular_ion_concentrations__i_to1 +
1231 (var_intracellular_ion_concentrations__i_NaK * (-2.0))) *
1232 var_intracellular_ion_concentrations__A_cap * 1.0) /
1233 (var_intracellular_ion_concentrations__V_myo *
1234 var_intracellular_ion_concentrations__F); // 'millimole per
1235 // litre per second'
1236 const NekDouble
1237 var_intracellular_ion_concentrations__d_Ca_ss_d_environment__time =
1238 var_intracellular_ion_concentrations__beta_SS *
1239 ((((var_intracellular_ion_concentrations__J_rel *
1240 var_intracellular_ion_concentrations__V_JSR) /
1241 var_intracellular_ion_concentrations__V_SS) -
1242 ((var_intracellular_ion_concentrations__J_xfer *
1243 var_intracellular_ion_concentrations__V_myo) /
1244 var_intracellular_ion_concentrations__V_SS)) -
1245 ((var_intracellular_ion_concentrations__i_Ca *
1246 var_intracellular_ion_concentrations__A_cap * 1.0) /
1247 (2.0 * var_intracellular_ion_concentrations__V_SS *
1248 var_intracellular_ion_concentrations__F))); // 'millimole per
1249 // litre per
1250 // second'
1251 const NekDouble
1252 var_intracellular_ion_concentrations__d_Ca_JSR_d_environment__time =
1253 var_intracellular_ion_concentrations__beta_JSR *
1254 (var_intracellular_ion_concentrations__J_tr -
1255 var_intracellular_ion_concentrations__J_rel); // 'millimole per
1256 // litre per
1257 // second'
1258 const NekDouble
1259 var_intracellular_ion_concentrations__d_Ca_NSR_d_environment__time =
1260 ((var_intracellular_ion_concentrations__J_up *
1261 var_intracellular_ion_concentrations__V_myo) /
1262 var_intracellular_ion_concentrations__V_NSR) -
1263 ((var_intracellular_ion_concentrations__J_tr *
1264 var_intracellular_ion_concentrations__V_JSR) /
1265 var_intracellular_ion_concentrations__V_NSR); // 'millimole per
1266 // litre per
1267 // second'
1268 const NekDouble
1269 var_chaste_interface__fast_sodium_current_m_gate__d_m_d_environment__time_converter =
1270 var_fast_sodium_current__fast_sodium_current_m_gate__d_m_d_environment__time; // per_second
1271 const NekDouble
1272 var_chaste_interface__fast_sodium_current_m_gate__d_m_d_environment__time =
1273 0.001 *
1274 var_chaste_interface__fast_sodium_current_m_gate__d_m_d_environment__time_converter; // 'per millisecond'
1275 const NekDouble
1276 var_chaste_interface__fast_sodium_current_h_gate__d_h_d_environment__time_converter =
1277 var_fast_sodium_current__fast_sodium_current_h_gate__d_h_d_environment__time; // per_second
1278 const NekDouble
1279 var_chaste_interface__fast_sodium_current_h_gate__d_h_d_environment__time =
1280 0.001 *
1281 var_chaste_interface__fast_sodium_current_h_gate__d_h_d_environment__time_converter; // 'per millisecond'
1282 const NekDouble
1283 var_chaste_interface__fast_sodium_current_j_gate__d_j_d_environment__time_converter =
1284 var_fast_sodium_current__fast_sodium_current_j_gate__d_j_d_environment__time; // per_second
1285 const NekDouble
1286 var_chaste_interface__fast_sodium_current_j_gate__d_j_d_environment__time =
1287 0.001 *
1288 var_chaste_interface__fast_sodium_current_j_gate__d_j_d_environment__time_converter; // 'per millisecond'
1289 const NekDouble
1290 var_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time_converter =
1291 var_rapid_activating_delayed_rectifiyer_K_current__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time; // per_second
1292 const NekDouble
1293 var_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time =
1294 0.001 *
1295 var_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time_converter; // 'per millisecond'
1296 const NekDouble
1297 var_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time_converter =
1298 var_slow_activating_delayed_rectifiyer_K_current__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time; // per_second
1299 const NekDouble
1300 var_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time =
1301 0.001 *
1302 var_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time_converter; // 'per millisecond'
1303 const NekDouble
1304 var_chaste_interface__transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time_converter =
1305 var_transient_outward_potassium_current__transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time; // per_second
1306 const NekDouble
1307 var_chaste_interface__transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time =
1308 0.001 *
1309 var_chaste_interface__transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time_converter; // 'per millisecond'
1310 const NekDouble
1311 var_chaste_interface__transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time_converter =
1312 var_transient_outward_potassium_current__transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time; // per_second
1313 const NekDouble
1314 var_chaste_interface__transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time =
1315 0.001 *
1316 var_chaste_interface__transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time_converter; // 'per millisecond'
1317 const NekDouble
1318 var_chaste_interface__L_type_Ca_current__d_O_d_environment__time_converter =
1319 var_L_type_Ca_current__d_O_d_environment__time; // per_second
1320 const NekDouble
1321 var_chaste_interface__L_type_Ca_current__d_O_d_environment__time =
1322 0.001 *
1323 var_chaste_interface__L_type_Ca_current__d_O_d_environment__time_converter; // 'per millisecond'
1324 const NekDouble
1325 var_chaste_interface__L_type_Ca_current__d_O_Ca_d_environment__time_converter =
1326 var_L_type_Ca_current__d_O_Ca_d_environment__time; // per_second
1327 const NekDouble
1328 var_chaste_interface__L_type_Ca_current__d_O_Ca_d_environment__time =
1329 0.001 *
1330 var_chaste_interface__L_type_Ca_current__d_O_Ca_d_environment__time_converter; // 'per millisecond'
1331 const NekDouble
1332 var_chaste_interface__L_type_Ca_current__d_C0_d_environment__time_converter =
1333 var_L_type_Ca_current__d_C0_d_environment__time; // per_second
1334 const NekDouble
1335 var_chaste_interface__L_type_Ca_current__d_C0_d_environment__time =
1336 0.001 *
1337 var_chaste_interface__L_type_Ca_current__d_C0_d_environment__time_converter; // 'per millisecond'
1338 const NekDouble
1339 var_chaste_interface__L_type_Ca_current__d_C1_d_environment__time_converter =
1340 var_L_type_Ca_current__d_C1_d_environment__time; // per_second
1341 const NekDouble
1342 var_chaste_interface__L_type_Ca_current__d_C1_d_environment__time =
1343 0.001 *
1344 var_chaste_interface__L_type_Ca_current__d_C1_d_environment__time_converter; // 'per millisecond'
1345 const NekDouble
1346 var_chaste_interface__L_type_Ca_current__d_C2_d_environment__time_converter =
1347 var_L_type_Ca_current__d_C2_d_environment__time; // per_second
1348 const NekDouble
1349 var_chaste_interface__L_type_Ca_current__d_C2_d_environment__time =
1350 0.001 *
1351 var_chaste_interface__L_type_Ca_current__d_C2_d_environment__time_converter; // 'per millisecond'
1352 const NekDouble
1353 var_chaste_interface__L_type_Ca_current__d_C3_d_environment__time_converter =
1354 var_L_type_Ca_current__d_C3_d_environment__time; // per_second
1355 const NekDouble
1356 var_chaste_interface__L_type_Ca_current__d_C3_d_environment__time =
1357 0.001 *
1358 var_chaste_interface__L_type_Ca_current__d_C3_d_environment__time_converter; // 'per millisecond'
1359 const NekDouble
1360 var_chaste_interface__L_type_Ca_current__d_C4_d_environment__time_converter =
1361 var_L_type_Ca_current__d_C4_d_environment__time; // per_second
1362 const NekDouble
1363 var_chaste_interface__L_type_Ca_current__d_C4_d_environment__time =
1364 0.001 *
1365 var_chaste_interface__L_type_Ca_current__d_C4_d_environment__time_converter; // 'per millisecond'
1366 const NekDouble
1367 var_chaste_interface__L_type_Ca_current__d_C_Ca0_d_environment__time_converter =
1368 var_L_type_Ca_current__d_C_Ca0_d_environment__time; // per_second
1369 const NekDouble
1370 var_chaste_interface__L_type_Ca_current__d_C_Ca0_d_environment__time =
1371 0.001 *
1372 var_chaste_interface__L_type_Ca_current__d_C_Ca0_d_environment__time_converter; // 'per millisecond'
1373 const NekDouble
1374 var_chaste_interface__L_type_Ca_current__d_C_Ca1_d_environment__time_converter =
1375 var_L_type_Ca_current__d_C_Ca1_d_environment__time; // per_second
1376 const NekDouble
1377 var_chaste_interface__L_type_Ca_current__d_C_Ca1_d_environment__time =
1378 0.001 *
1379 var_chaste_interface__L_type_Ca_current__d_C_Ca1_d_environment__time_converter; // 'per millisecond'
1380 const NekDouble
1381 var_chaste_interface__L_type_Ca_current__d_C_Ca2_d_environment__time_converter =
1382 var_L_type_Ca_current__d_C_Ca2_d_environment__time; // per_second
1383 const NekDouble
1384 var_chaste_interface__L_type_Ca_current__d_C_Ca2_d_environment__time =
1385 0.001 *
1386 var_chaste_interface__L_type_Ca_current__d_C_Ca2_d_environment__time_converter; // 'per millisecond'
1387 const NekDouble
1388 var_chaste_interface__L_type_Ca_current__d_C_Ca3_d_environment__time_converter =
1389 var_L_type_Ca_current__d_C_Ca3_d_environment__time; // per_second
1390 const NekDouble
1391 var_chaste_interface__L_type_Ca_current__d_C_Ca3_d_environment__time =
1392 0.001 *
1393 var_chaste_interface__L_type_Ca_current__d_C_Ca3_d_environment__time_converter; // 'per millisecond'
1394 const NekDouble
1395 var_chaste_interface__L_type_Ca_current__d_C_Ca4_d_environment__time_converter =
1396 var_L_type_Ca_current__d_C_Ca4_d_environment__time; // per_second
1397 const NekDouble
1398 var_chaste_interface__L_type_Ca_current__d_C_Ca4_d_environment__time =
1399 0.001 *
1400 var_chaste_interface__L_type_Ca_current__d_C_Ca4_d_environment__time_converter; // 'per millisecond'
1401 const NekDouble
1402 var_chaste_interface__L_type_Ca_current_y_gate__d_y_d_environment__time_converter =
1403 var_L_type_Ca_current__L_type_Ca_current_y_gate__d_y_d_environment__time; // per_second
1404 const NekDouble
1405 var_chaste_interface__L_type_Ca_current_y_gate__d_y_d_environment__time =
1406 0.001 *
1407 var_chaste_interface__L_type_Ca_current_y_gate__d_y_d_environment__time_converter; // 'per millisecond'
1408 const NekDouble
1409 var_chaste_interface__RyR_channel__d_P_O1_d_environment__time_converter =
1410 var_RyR_channel__d_P_O1_d_environment__time; // per_second
1411 const NekDouble var_chaste_interface__RyR_channel__d_P_O1_d_environment__time =
1412 0.001 *
1413 var_chaste_interface__RyR_channel__d_P_O1_d_environment__time_converter; // 'per millisecond'
1414 const NekDouble
1415 var_chaste_interface__RyR_channel__d_P_O2_d_environment__time_converter =
1416 var_RyR_channel__d_P_O2_d_environment__time; // per_second
1417 const NekDouble var_chaste_interface__RyR_channel__d_P_O2_d_environment__time =
1418 0.001 *
1419 var_chaste_interface__RyR_channel__d_P_O2_d_environment__time_converter; // 'per millisecond'
1420 const NekDouble
1421 var_chaste_interface__RyR_channel__d_P_C1_d_environment__time_converter =
1422 var_RyR_channel__d_P_C1_d_environment__time; // per_second
1423 const NekDouble var_chaste_interface__RyR_channel__d_P_C1_d_environment__time =
1424 0.001 *
1425 var_chaste_interface__RyR_channel__d_P_C1_d_environment__time_converter; // 'per millisecond'
1426 const NekDouble
1427 var_chaste_interface__RyR_channel__d_P_C2_d_environment__time_converter =
1428 var_RyR_channel__d_P_C2_d_environment__time; // per_second
1429 const NekDouble var_chaste_interface__RyR_channel__d_P_C2_d_environment__time =
1430 0.001 *
1431 var_chaste_interface__RyR_channel__d_P_C2_d_environment__time_converter; // 'per millisecond'
1432 const NekDouble
1433 var_chaste_interface__intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time_converter =
1434 var_intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time; // ___units_89
1435 const NekDouble
1436 var_chaste_interface__intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time =
1437 0.001 *
1438 var_chaste_interface__intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time_converter; // 'millimolar per millisecond'
1439 const NekDouble
1440 var_chaste_interface__intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time_converter =
1441 var_intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time; // millimole_per_litre_per_second
1442 const NekDouble
1443 var_chaste_interface__intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time =
1444 0.001 *
1445 var_chaste_interface__intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time_converter; // 'millimolar per millisecond'
1446 const NekDouble
1447 var_chaste_interface__intracellular_ion_concentrations__d_Nai_d_environment__time_converter =
1448 var_intracellular_ion_concentrations__d_Nai_d_environment__time; // millimole_per_litre_per_second
1449 const NekDouble
1450 var_chaste_interface__intracellular_ion_concentrations__d_Nai_d_environment__time =
1451 0.001 *
1452 var_chaste_interface__intracellular_ion_concentrations__d_Nai_d_environment__time_converter; // 'millimolar per millisecond'
1453 const NekDouble
1454 var_chaste_interface__intracellular_ion_concentrations__d_Cai_d_environment__time_converter =
1455 var_intracellular_ion_concentrations__d_Cai_d_environment__time; // millimole_per_litre_per_second
1456 const NekDouble
1457 var_chaste_interface__intracellular_ion_concentrations__d_Cai_d_environment__time =
1458 0.001 *
1459 var_chaste_interface__intracellular_ion_concentrations__d_Cai_d_environment__time_converter; // 'millimolar per millisecond'
1460 const NekDouble
1461 var_chaste_interface__intracellular_ion_concentrations__d_Ki_d_environment__time_converter =
1462 var_intracellular_ion_concentrations__d_Ki_d_environment__time; // millimole_per_litre_per_second
1463 const NekDouble
1464 var_chaste_interface__intracellular_ion_concentrations__d_Ki_d_environment__time =
1465 0.001 *
1466 var_chaste_interface__intracellular_ion_concentrations__d_Ki_d_environment__time_converter; // 'millimolar per millisecond'
1467 const NekDouble
1468 var_chaste_interface__intracellular_ion_concentrations__d_Ca_ss_d_environment__time_converter =
1469 var_intracellular_ion_concentrations__d_Ca_ss_d_environment__time; // millimole_per_litre_per_second
1470 const NekDouble
1471 var_chaste_interface__intracellular_ion_concentrations__d_Ca_ss_d_environment__time =
1472 0.001 *
1473 var_chaste_interface__intracellular_ion_concentrations__d_Ca_ss_d_environment__time_converter; // 'millimolar per millisecond'
1474 const NekDouble
1475 var_chaste_interface__intracellular_ion_concentrations__d_Ca_JSR_d_environment__time_converter =
1476 var_intracellular_ion_concentrations__d_Ca_JSR_d_environment__time; // millimole_per_litre_per_second
1477 const NekDouble
1478 var_chaste_interface__intracellular_ion_concentrations__d_Ca_JSR_d_environment__time =
1479 0.001 *
1480 var_chaste_interface__intracellular_ion_concentrations__d_Ca_JSR_d_environment__time_converter; // 'millimolar per millisecond'
1481 const NekDouble
1482 var_chaste_interface__intracellular_ion_concentrations__d_Ca_NSR_d_environment__time_converter =
1483 var_intracellular_ion_concentrations__d_Ca_NSR_d_environment__time; // millimole_per_litre_per_second
1484 const NekDouble
1485 var_chaste_interface__intracellular_ion_concentrations__d_Ca_NSR_d_environment__time =
1486 0.001 *
1487 var_chaste_interface__intracellular_ion_concentrations__d_Ca_NSR_d_environment__time_converter; // 'millimolar per millisecond'
1488 const NekDouble d_dt_chaste_interface__fast_sodium_current_m_gate__m =
1489 var_chaste_interface__fast_sodium_current_m_gate__d_m_d_environment__time; // 'per millisecond'
1490 const NekDouble d_dt_chaste_interface__fast_sodium_current_h_gate__h =
1491 var_chaste_interface__fast_sodium_current_h_gate__d_h_d_environment__time; // 'per millisecond'
1492 const NekDouble d_dt_chaste_interface__fast_sodium_current_j_gate__j =
1493 var_chaste_interface__fast_sodium_current_j_gate__d_j_d_environment__time; // 'per millisecond'
1494 const NekDouble
1495 d_dt_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr =
1496 var_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__d_X_kr_d_environment__time; // 'per millisecond'
1497 const NekDouble
1498 d_dt_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks =
1499 var_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__d_X_ks_d_environment__time; // 'per millisecond'
1500 const NekDouble
1501 d_dt_chaste_interface__transient_outward_potassium_current_X_to1_gate__X_to1 =
1502 var_chaste_interface__transient_outward_potassium_current_X_to1_gate__d_X_to1_d_environment__time; // 'per millisecond'
1503 const NekDouble
1504 d_dt_chaste_interface__transient_outward_potassium_current_Y_to1_gate__Y_to1 =
1505 var_chaste_interface__transient_outward_potassium_current_Y_to1_gate__d_Y_to1_d_environment__time; // 'per millisecond'
1506 const NekDouble d_dt_chaste_interface__L_type_Ca_current__O =
1507 var_chaste_interface__L_type_Ca_current__d_O_d_environment__time; // 'per millisecond'
1508 const NekDouble d_dt_chaste_interface__L_type_Ca_current__O_Ca =
1509 var_chaste_interface__L_type_Ca_current__d_O_Ca_d_environment__time; // 'per millisecond'
1510 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C0 =
1511 var_chaste_interface__L_type_Ca_current__d_C0_d_environment__time; // 'per millisecond'
1512 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C1 =
1513 var_chaste_interface__L_type_Ca_current__d_C1_d_environment__time; // 'per millisecond'
1514 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C2 =
1515 var_chaste_interface__L_type_Ca_current__d_C2_d_environment__time; // 'per millisecond'
1516 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C3 =
1517 var_chaste_interface__L_type_Ca_current__d_C3_d_environment__time; // 'per millisecond'
1518 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C4 =
1519 var_chaste_interface__L_type_Ca_current__d_C4_d_environment__time; // 'per millisecond'
1520 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C_Ca0 =
1521 var_chaste_interface__L_type_Ca_current__d_C_Ca0_d_environment__time; // 'per millisecond'
1522 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C_Ca1 =
1523 var_chaste_interface__L_type_Ca_current__d_C_Ca1_d_environment__time; // 'per millisecond'
1524 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C_Ca2 =
1525 var_chaste_interface__L_type_Ca_current__d_C_Ca2_d_environment__time; // 'per millisecond'
1526 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C_Ca3 =
1527 var_chaste_interface__L_type_Ca_current__d_C_Ca3_d_environment__time; // 'per millisecond'
1528 const NekDouble d_dt_chaste_interface__L_type_Ca_current__C_Ca4 =
1529 var_chaste_interface__L_type_Ca_current__d_C_Ca4_d_environment__time; // 'per millisecond'
1530 const NekDouble d_dt_chaste_interface__L_type_Ca_current_y_gate__y =
1531 var_chaste_interface__L_type_Ca_current_y_gate__d_y_d_environment__time; // 'per millisecond'
1532 const NekDouble d_dt_chaste_interface__RyR_channel__P_O1 =
1533 var_chaste_interface__RyR_channel__d_P_O1_d_environment__time; // 'per
1534 // millisecond'
1535 const NekDouble d_dt_chaste_interface__RyR_channel__P_O2 =
1536 var_chaste_interface__RyR_channel__d_P_O2_d_environment__time; // 'per
1537 // millisecond'
1538 const NekDouble d_dt_chaste_interface__RyR_channel__P_C1 =
1539 var_chaste_interface__RyR_channel__d_P_C1_d_environment__time; // 'per
1540 // millisecond'
1541 const NekDouble d_dt_chaste_interface__RyR_channel__P_C2 =
1542 var_chaste_interface__RyR_channel__d_P_C2_d_environment__time; // 'per
1543 // millisecond'
1544 const NekDouble d_dt_chaste_interface__intracellular_Ca_fluxes__HTRPNCa =
1545 var_chaste_interface__intracellular_Ca_fluxes__d_HTRPNCa_d_environment__time; // 'millimole per litre per millisecond'
1546 const NekDouble d_dt_chaste_interface__intracellular_Ca_fluxes__LTRPNCa =
1547 var_chaste_interface__intracellular_Ca_fluxes__d_LTRPNCa_d_environment__time; // 'millimole per litre per millisecond'
1548 const NekDouble d_dt_chaste_interface__intracellular_ion_concentrations__Nai =
1549 var_chaste_interface__intracellular_ion_concentrations__d_Nai_d_environment__time; // 'millimole per litre per millisecond'
1550 const NekDouble d_dt_chaste_interface__intracellular_ion_concentrations__Cai =
1551 var_chaste_interface__intracellular_ion_concentrations__d_Cai_d_environment__time; // 'millimole per litre per millisecond'
1552 const NekDouble d_dt_chaste_interface__intracellular_ion_concentrations__Ki =
1553 var_chaste_interface__intracellular_ion_concentrations__d_Ki_d_environment__time; // 'millimole per litre per millisecond'
1554 const NekDouble
1555 d_dt_chaste_interface__intracellular_ion_concentrations__Ca_ss =
1556 var_chaste_interface__intracellular_ion_concentrations__d_Ca_ss_d_environment__time; // 'millimole per litre per millisecond'
1557 const NekDouble
1558 d_dt_chaste_interface__intracellular_ion_concentrations__Ca_JSR =
1559 var_chaste_interface__intracellular_ion_concentrations__d_Ca_JSR_d_environment__time; // 'millimole per litre per millisecond'
1560 const NekDouble
1561 d_dt_chaste_interface__intracellular_ion_concentrations__Ca_NSR =
1562 var_chaste_interface__intracellular_ion_concentrations__d_Ca_NSR_d_environment__time; // 'millimole per litre per millisecond'
1563
1564 const NekDouble var_membrane__C_sc = 0.001; // microF_per_cm2
1565 const NekDouble var_membrane__i_Na =
1566 var_fast_sodium_current__i_Na; // microA_per_microF
1567 const NekDouble var_membrane__i_Ca =
1568 var_L_type_Ca_current__i_Ca; // microA_per_microF
1569 const NekDouble var_membrane__i_Ca_K =
1570 var_L_type_Ca_current__i_Ca_K; // microA_per_microF
1571 const NekDouble var_membrane__i_Kr =
1572 var_rapid_activating_delayed_rectifiyer_K_current__i_Kr; // microA_per_microF
1573 const NekDouble var_membrane__i_Ks =
1574 var_slow_activating_delayed_rectifiyer_K_current__i_Ks; // microA_per_microF
1575 const NekDouble var_membrane__i_to1 =
1576 var_transient_outward_potassium_current__i_to1; // microA_per_microF
1577 const NekDouble var_membrane__i_K1 =
1578 var_time_independent_potassium_current__i_K1; // microA_per_microF
1579 const NekDouble var_membrane__i_Kp =
1580 var_plateau_potassium_current__i_Kp; // microA_per_microF
1581 const NekDouble var_membrane__i_NaCa =
1582 var_Na_Ca_exchanger__i_NaCa; // microA_per_microF
1583 const NekDouble var_membrane__i_NaK =
1584 var_sodium_potassium_pump__i_NaK; // microA_per_microF
1585 const NekDouble var_membrane__i_p_Ca =
1586 var_sarcolemmal_calcium_pump__i_p_Ca; // microA_per_microF
1587 const NekDouble var_membrane__i_Ca_b =
1588 var_calcium_background_current__i_Ca_b; // microA_per_microF
1589 const NekDouble var_membrane__i_Na_b =
1590 var_sodium_background_current__i_Na_b; // microA_per_microF
1591 const NekDouble var_chaste_interface__membrane__i_Stim = 0.0;
1592 const NekDouble var_membrane__i_Stim_converter =
1593 var_chaste_interface__membrane__i_Stim; // uA_per_cm2
1594 const NekDouble
1595 var_membrane__chaste_interface__chaste_membrane_capacitance =
1596 1.0; // uF_per_cm2
1597 const NekDouble var_membrane__i_Stim =
1598 var_membrane__i_Stim_converter /
1599 var_membrane__chaste_interface__chaste_membrane_capacitance; // microA_per_microF
1600 const NekDouble var_membrane__d_V_d_environment__time =
1601 ((-1.0) * 1.0 *
1602 (var_membrane__i_Na + var_membrane__i_Ca + var_membrane__i_Ca_K +
1603 var_membrane__i_Kr + var_membrane__i_Ks + var_membrane__i_to1 +
1604 var_membrane__i_K1 + var_membrane__i_Kp + var_membrane__i_NaCa +
1605 var_membrane__i_NaK + var_membrane__i_p_Ca +
1606 var_membrane__i_Na_b + var_membrane__i_Ca_b +
1607 var_membrane__i_Stim)) /
1608 var_membrane__C_sc; // 'millivolt per second'
1609 const NekDouble
1610 var_chaste_interface__membrane__d_V_d_environment__time_converter =
1611 var_membrane__d_V_d_environment__time; // ___units_1
1612 const NekDouble var_chaste_interface__membrane__d_V_d_environment__time =
1613 0.001 *
1614 var_chaste_interface__membrane__d_V_d_environment__time_converter; // 'millivolt per millisecond'
1615 d_dt_chaste_interface__membrane__V =
1616 var_chaste_interface__membrane__d_V_d_environment__time; // 'millivolt
1617 // per
1618 // millisecond'
1619 outarray[0][i] = d_dt_chaste_interface__membrane__V;
1620 outarray[1][i] = d_dt_chaste_interface__fast_sodium_current_m_gate__m;
1621 outarray[2][i] = d_dt_chaste_interface__fast_sodium_current_h_gate__h;
1622 outarray[3][i] = d_dt_chaste_interface__fast_sodium_current_j_gate__j;
1623 outarray[4][i] =
1624 d_dt_chaste_interface__rapid_activating_delayed_rectifiyer_K_current_X_kr_gate__X_kr;
1625 outarray[5][i] =
1626 d_dt_chaste_interface__slow_activating_delayed_rectifiyer_K_current_X_ks_gate__X_ks;
1627 outarray[6][i] =
1628 d_dt_chaste_interface__transient_outward_potassium_current_X_to1_gate__X_to1;
1629 outarray[7][i] =
1630 d_dt_chaste_interface__transient_outward_potassium_current_Y_to1_gate__Y_to1;
1631 outarray[8][i] = d_dt_chaste_interface__L_type_Ca_current__O;
1632 outarray[9][i] = d_dt_chaste_interface__L_type_Ca_current__O_Ca;
1633 outarray[10][i] = d_dt_chaste_interface__L_type_Ca_current__C0;
1634 outarray[11][i] = d_dt_chaste_interface__L_type_Ca_current__C1;
1635 outarray[12][i] = d_dt_chaste_interface__L_type_Ca_current__C2;
1636 outarray[13][i] = d_dt_chaste_interface__L_type_Ca_current__C3;
1637 outarray[14][i] = d_dt_chaste_interface__L_type_Ca_current__C4;
1638 outarray[15][i] = d_dt_chaste_interface__L_type_Ca_current__C_Ca0;
1639 outarray[16][i] = d_dt_chaste_interface__L_type_Ca_current__C_Ca1;
1640 outarray[17][i] = d_dt_chaste_interface__L_type_Ca_current__C_Ca2;
1641 outarray[18][i] = d_dt_chaste_interface__L_type_Ca_current__C_Ca3;
1642 outarray[19][i] = d_dt_chaste_interface__L_type_Ca_current__C_Ca4;
1643 outarray[20][i] = d_dt_chaste_interface__L_type_Ca_current_y_gate__y;
1644 outarray[21][i] = d_dt_chaste_interface__RyR_channel__P_O1;
1645 outarray[22][i] = d_dt_chaste_interface__RyR_channel__P_O2;
1646 outarray[23][i] = d_dt_chaste_interface__RyR_channel__P_C1;
1647 outarray[24][i] = d_dt_chaste_interface__RyR_channel__P_C2;
1648 outarray[25][i] =
1649 d_dt_chaste_interface__intracellular_Ca_fluxes__HTRPNCa;
1650 outarray[26][i] =
1651 d_dt_chaste_interface__intracellular_Ca_fluxes__LTRPNCa;
1652 outarray[27][i] =
1653 d_dt_chaste_interface__intracellular_ion_concentrations__Nai;
1654 outarray[28][i] =
1655 d_dt_chaste_interface__intracellular_ion_concentrations__Cai;
1656 outarray[29][i] =
1657 d_dt_chaste_interface__intracellular_ion_concentrations__Ki;
1658 outarray[30][i] =
1659 d_dt_chaste_interface__intracellular_ion_concentrations__Ca_ss;
1660 outarray[31][i] =
1661 d_dt_chaste_interface__intracellular_ion_concentrations__Ca_JSR;
1662 outarray[32][i] =
1663 d_dt_chaste_interface__intracellular_ion_concentrations__Ca_NSR;
1664 }
1665}
1666
1667/**
1668 *
1669 */
1671{
1672 SolverUtils::AddSummaryItem(s, "Cell model", "Winslow99");
1673}
1674
1675/**
1676 *
1677 */
1679{
1680 Vmath::Fill(m_nq, -96.1638, m_cellSol[0], 1);
1681 Vmath::Fill(m_nq, 0.0328302, m_cellSol[1], 1);
1682 Vmath::Fill(m_nq, 0.988354, m_cellSol[2], 1);
1683 Vmath::Fill(m_nq, 0.99254, m_cellSol[3], 1);
1684 Vmath::Fill(m_nq, 0.51, m_cellSol[4], 1);
1685 Vmath::Fill(m_nq, 0.264, m_cellSol[5], 1);
1686 Vmath::Fill(m_nq, 2.63, m_cellSol[6], 1);
1687 Vmath::Fill(m_nq, 0.99, m_cellSol[7], 1);
1688 Vmath::Fill(m_nq, 9.84546e-21, m_cellSol[8], 1);
1689 Vmath::Fill(m_nq, 0.0, m_cellSol[9], 1);
1690 Vmath::Fill(m_nq, 0.997208, m_cellSol[10], 1);
1691 Vmath::Fill(m_nq, 6.38897e-5, m_cellSol[11], 1);
1692 Vmath::Fill(m_nq, 1.535e-9, m_cellSol[12], 1);
1693 Vmath::Fill(m_nq, 1.63909e-14, m_cellSol[13], 1);
1694 Vmath::Fill(m_nq, 6.56337e-20, m_cellSol[14], 1);
1695 Vmath::Fill(m_nq, 0.00272826, m_cellSol[15], 1);
1696 Vmath::Fill(m_nq, 6.99215e-7, m_cellSol[16], 1);
1697 Vmath::Fill(m_nq, 6.71989e-11, m_cellSol[17], 1);
1698 Vmath::Fill(m_nq, 2.87031e-15, m_cellSol[18], 1);
1699 Vmath::Fill(m_nq, 4.59752e-20, m_cellSol[19], 1);
1700 Vmath::Fill(m_nq, 0.798, m_cellSol[20], 1);
1701 Vmath::Fill(m_nq, 0.0, m_cellSol[21], 1);
1702 Vmath::Fill(m_nq, 0.0, m_cellSol[22], 1);
1703 Vmath::Fill(m_nq, 0.47, m_cellSol[23], 1);
1704 Vmath::Fill(m_nq, 0.53, m_cellSol[24], 1);
1705 Vmath::Fill(m_nq, 0.98, m_cellSol[25], 1);
1706 Vmath::Fill(m_nq, 0.078, m_cellSol[26], 1);
1707 Vmath::Fill(m_nq, 10.0, m_cellSol[27], 1);
1708 Vmath::Fill(m_nq, 0.00008, m_cellSol[28], 1);
1709 Vmath::Fill(m_nq, 157.8, m_cellSol[29], 1);
1710 Vmath::Fill(m_nq, 0.00011, m_cellSol[30], 1);
1711 Vmath::Fill(m_nq, 0.257, m_cellSol[31], 1);
1712 Vmath::Fill(m_nq, 0.257, m_cellSol[32], 1);
1713}
1714} // namespace Nektar
Cell model base class.
Definition: CellModel.h:66
Array< OneD, Array< OneD, NekDouble > > m_cellSol
Cell model solution variables.
Definition: CellModel.h:126
std::vector< int > m_concentrations
Indices of cell model variables which are concentrations.
Definition: CellModel.h:139
std::vector< int > m_gates
Indices of cell model variables which are gates.
Definition: CellModel.h:141
size_t m_nq
Number of physical points.
Definition: CellModel.h:117
size_t m_nvar
Number of variables in cell model (inc. transmembrane voltage)
Definition: CellModel.h:119
tKey RegisterCreatorFunction(tKey idKey, CreatorFunction classCreator, std::string pDesc="")
Register a class with the factory.
Definition: NekFactory.hpp:198
virtual void v_SetInitialConditions() override
Set initial conditions for cell model.
Definition: Winslow99.cpp:1678
virtual void v_GenerateSummary(SummaryList &s) override
Prints a summary of the model parameters.
Definition: Winslow99.cpp:1670
static CellModelSharedPtr create(const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField)
Creates an instance of this class.
Definition: Winslow99.h:47
static std::string className
Name of class.
Definition: Winslow99.h:55
virtual void v_Update(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time) override
Computes the reaction terms $f(u,v)$ and $g(u,v)$.
Definition: Winslow99.cpp:88
Winslow99(const LibUtilities::SessionReaderSharedPtr &pSession, const MultiRegions::ExpListSharedPtr &pField)
Constructor.
Definition: Winslow99.cpp:49
std::shared_ptr< SessionReader > SessionReaderSharedPtr
std::shared_ptr< ExpList > ExpListSharedPtr
Shared pointer to an ExpList object.
std::vector< std::pair< std::string, std::string > > SummaryList
Definition: Misc.h:48
void AddSummaryItem(SummaryList &l, const std::string &name, const std::string &value)
Adds a summary item to the summary info list.
Definition: Misc.cpp:49
The above copyright notice and this permission notice shall be included.
Definition: CoupledSolver.h:2
CellModelFactory & GetCellModelFactory()
Definition: CellModel.cpp:46
double NekDouble
void Fill(int n, const T alpha, T *x, const int incx)
Fill a vector with a constant value.
Definition: Vmath.cpp:43
scalarT< T > log(scalarT< T > in)
Definition: scalar.hpp:303
scalarT< T > sqrt(scalarT< T > in)
Definition: scalar.hpp:294