DummyEquationSystem Class Reference

Dummy equation system that can be used for Python testing. More...

Inheritance diagram for DummyEquationSystem:

Public Member Functions
	~DummyEquationSystem () override
Public Member Functions inherited from Nektar::SolverUtils::EquationSystem
virtual SOLVER_UTILS_EXPORT	~EquationSystem ()
	Destructor.
SOLVER_UTILS_EXPORT void	InitObject (bool DeclareField=true)
	Initialises the members of this object.
SOLVER_UTILS_EXPORT void	DoInitialise (bool dumpInitialConditions=true)
	Perform any initialisation necessary before solving the problem.
SOLVER_UTILS_EXPORT void	DoSolve ()
	Solve the problem.
SOLVER_UTILS_EXPORT void	TransCoeffToPhys ()
	Transform from coefficient to physical space.
SOLVER_UTILS_EXPORT void	TransPhysToCoeff ()
	Transform from physical to coefficient space.
SOLVER_UTILS_EXPORT void	Output ()
	Perform output operations after solve.
SOLVER_UTILS_EXPORT std::string	GetSessionName ()
	Get Session name.
template<class T >
std::shared_ptr< T >	as ()
SOLVER_UTILS_EXPORT void	ResetSessionName (std::string newname)
	Reset Session name.
SOLVER_UTILS_EXPORT LibUtilities::SessionReaderSharedPtr	GetSession ()
	Get Session name.
SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr	GetPressure ()
	Get pressure field if available.
SOLVER_UTILS_EXPORT void	ExtraFldOutput (std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
SOLVER_UTILS_EXPORT void	PrintSummary (std::ostream &out)
	Print a summary of parameters and solver characteristics.
SOLVER_UTILS_EXPORT void	SetLambda (NekDouble lambda)
	Set parameter m_lambda.
SOLVER_UTILS_EXPORT SessionFunctionSharedPtr	GetFunction (std::string name, const MultiRegions::ExpListSharedPtr &field=MultiRegions::NullExpListSharedPtr, bool cache=false)
	Get a SessionFunction by name.
SOLVER_UTILS_EXPORT void	SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
	Initialise the data in the dependent fields.
SOLVER_UTILS_EXPORT void	EvaluateExactSolution (int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
	Evaluates an exact solution.
SOLVER_UTILS_EXPORT NekDouble	L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln, bool Normalised=false)
	Compute the L2 error between fields and a given exact solution.
SOLVER_UTILS_EXPORT NekDouble	L2Error (unsigned int field, bool Normalised=false)
	Compute the L2 error of the fields.
SOLVER_UTILS_EXPORT NekDouble	LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
	Linf error computation.
SOLVER_UTILS_EXPORT NekDouble	H1Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln, bool Normalised=false)
	Compute the H1 error between fields and a given exact solution.
SOLVER_UTILS_EXPORT Array< OneD, NekDouble >	ErrorExtraPoints (unsigned int field)
	Compute error (L2 and L_inf) over an larger set of quadrature points return [L2 Linf].
SOLVER_UTILS_EXPORT void	Checkpoint_Output (const int n)
	Write checkpoint file of m_fields.
SOLVER_UTILS_EXPORT void	Checkpoint_Output (const int n, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
	Write checkpoint file of custom data fields.
SOLVER_UTILS_EXPORT void	Checkpoint_BaseFlow (const int n)
	Write base flow file of m_fields.
SOLVER_UTILS_EXPORT void	WriteFld (const std::string &outname)
	Write field data to the given filename.
SOLVER_UTILS_EXPORT void	WriteFld (const std::string &outname, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
	Write input fields to the given filename.
SOLVER_UTILS_EXPORT void	ImportFld (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
	Input field data from the given file.
SOLVER_UTILS_EXPORT void	ImportFldToMultiDomains (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const int ndomains)
	Input field data from the given file to multiple domains.
SOLVER_UTILS_EXPORT void	ImportFld (const std::string &infile, std::vector< std::string > &fieldStr, Array< OneD, Array< OneD, NekDouble > > &coeffs)
	Output a field. Input field data into array from the given file.
SOLVER_UTILS_EXPORT void	ImportFld (const std::string &infile, MultiRegions::ExpListSharedPtr &pField, std::string &pFieldName)
	Output a field. Input field data into ExpList from the given file.
SOLVER_UTILS_EXPORT void	SessionSummary (SummaryList &vSummary)
	Write out a session summary.
SOLVER_UTILS_EXPORT Array< OneD, MultiRegions::ExpListSharedPtr > &	UpdateFields ()
SOLVER_UTILS_EXPORT LibUtilities::FieldMetaDataMap &	UpdateFieldMetaDataMap ()
	Get hold of FieldInfoMap so it can be updated.
SOLVER_UTILS_EXPORT NekDouble	GetTime ()
	Return final time.
SOLVER_UTILS_EXPORT int	GetNcoeffs ()
SOLVER_UTILS_EXPORT int	GetNcoeffs (const int eid)
SOLVER_UTILS_EXPORT int	GetNumExpModes ()
SOLVER_UTILS_EXPORT const Array< OneD, int >	GetNumExpModesPerExp ()
SOLVER_UTILS_EXPORT int	GetNvariables ()
SOLVER_UTILS_EXPORT const std::string	GetVariable (unsigned int i)
SOLVER_UTILS_EXPORT int	GetTraceTotPoints ()
SOLVER_UTILS_EXPORT int	GetTraceNpoints ()
SOLVER_UTILS_EXPORT int	GetExpSize ()
SOLVER_UTILS_EXPORT int	GetPhys_Offset (int n)
SOLVER_UTILS_EXPORT int	GetCoeff_Offset (int n)
SOLVER_UTILS_EXPORT int	GetTotPoints ()
SOLVER_UTILS_EXPORT int	GetTotPoints (int n)
SOLVER_UTILS_EXPORT int	GetNpoints ()
SOLVER_UTILS_EXPORT int	GetSteps ()
SOLVER_UTILS_EXPORT void	SetSteps (const int steps)
SOLVER_UTILS_EXPORT NekDouble	GetTimeStep ()
SOLVER_UTILS_EXPORT void	CopyFromPhysField (const int i, Array< OneD, NekDouble > &output)
SOLVER_UTILS_EXPORT void	CopyToPhysField (const int i, const Array< OneD, const NekDouble > &input)
SOLVER_UTILS_EXPORT Array< OneD, NekDouble > &	UpdatePhysField (const int i)
SOLVER_UTILS_EXPORT void	ZeroPhysFields ()
SOLVER_UTILS_EXPORT void	FwdTransFields ()
SOLVER_UTILS_EXPORT void	SetModifiedBasis (const bool modbasis)
SOLVER_UTILS_EXPORT int	GetCheckpointNumber ()
SOLVER_UTILS_EXPORT void	SetCheckpointNumber (int num)
SOLVER_UTILS_EXPORT int	GetCheckpointSteps ()
SOLVER_UTILS_EXPORT void	SetCheckpointSteps (int num)
SOLVER_UTILS_EXPORT int	GetInfoSteps ()
SOLVER_UTILS_EXPORT void	SetInfoSteps (int num)
SOLVER_UTILS_EXPORT void	SetIterationNumberPIT (int num)
SOLVER_UTILS_EXPORT void	SetWindowNumberPIT (int num)
SOLVER_UTILS_EXPORT Array< OneD, const Array< OneD, NekDouble > >	GetTraceNormals ()
SOLVER_UTILS_EXPORT void	SetTime (const NekDouble time)
SOLVER_UTILS_EXPORT void	SetTimeStep (const NekDouble timestep)
SOLVER_UTILS_EXPORT void	SetInitialStep (const int step)
SOLVER_UTILS_EXPORT void	SetBoundaryConditions (NekDouble time)
	Evaluates the boundary conditions at the given time.
SOLVER_UTILS_EXPORT bool	NegatedOp ()
	Identify if operator is negated in DoSolve.

Static Public Member Functions
static SolverUtils::EquationSystemSharedPtr	create (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph)
	Creates an instance of this class.

Static Public Attributes
static std::string	className
	Name of class.

Protected Member Functions
	DummyEquationSystem (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph)
void	v_InitObject (bool DeclareField) override
	Initialisation object for EquationSystem.
Protected Member Functions inherited from Nektar::SolverUtils::EquationSystem
SOLVER_UTILS_EXPORT	EquationSystem (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph)
	Initialises EquationSystem class members.
virtual SOLVER_UTILS_EXPORT void	v_DoInitialise (bool dumpInitialConditions=true)
	Virtual function for initialisation implementation.
virtual SOLVER_UTILS_EXPORT void	v_DoSolve ()
	Virtual function for solve implementation.
virtual SOLVER_UTILS_EXPORT NekDouble	v_LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
	Virtual function for the L_inf error computation between fields and a given exact solution.
virtual SOLVER_UTILS_EXPORT NekDouble	v_L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false)
	Virtual function for the L_2 error computation between fields and a given exact solution.
virtual SOLVER_UTILS_EXPORT NekDouble	v_H1Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false)
	Virtual function for the H_1 error computation between fields and a given exact solution.
virtual SOLVER_UTILS_EXPORT void	v_TransCoeffToPhys ()
	Virtual function for transformation to physical space.
virtual SOLVER_UTILS_EXPORT void	v_TransPhysToCoeff ()
	Virtual function for transformation to coefficient space.
virtual SOLVER_UTILS_EXPORT void	v_GenerateSummary (SummaryList &l)
	Virtual function for generating summary information.
virtual SOLVER_UTILS_EXPORT void	v_SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
virtual SOLVER_UTILS_EXPORT void	v_EvaluateExactSolution (unsigned int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
virtual SOLVER_UTILS_EXPORT void	v_Output (void)
virtual SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr	v_GetPressure (void)
virtual SOLVER_UTILS_EXPORT bool	v_NegatedOp (void)
	Virtual function to identify if operator is negated in DoSolve.
virtual SOLVER_UTILS_EXPORT void	v_ExtraFldOutput (std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)

Friends
class	MemoryManager< DummyEquationSystem >

Additional Inherited Members
Protected Types inherited from Nektar::SolverUtils::EquationSystem
enum	HomogeneousType { eHomogeneous1D , eHomogeneous2D , eHomogeneous3D , eNotHomogeneous }
	Parameter for homogeneous expansions. More...
Protected Attributes inherited from Nektar::SolverUtils::EquationSystem
LibUtilities::CommSharedPtr	m_comm
	Communicator.
bool	m_verbose
LibUtilities::SessionReaderSharedPtr	m_session
	The session reader.
std::map< std::string, SolverUtils::SessionFunctionSharedPtr >	m_sessionFunctions
	Map of known SessionFunctions.
LibUtilities::FieldIOSharedPtr	m_fld
	Field input/output.
Array< OneD, MultiRegions::ExpListSharedPtr >	m_fields
	Array holding all dependent variables.
SpatialDomains::BoundaryConditionsSharedPtr	m_boundaryConditions
	Pointer to boundary conditions object.
SpatialDomains::MeshGraphSharedPtr	m_graph
	Pointer to graph defining mesh.
std::string	m_sessionName
	Name of the session.
NekDouble	m_time
	Current time of simulation.
int	m_initialStep
	Number of the step where the simulation should begin.
NekDouble	m_fintime
	Finish time of the simulation.
NekDouble	m_timestep
	Time step size.
NekDouble	m_lambda
	Lambda constant in real system if one required.
NekDouble	m_checktime
	Time between checkpoints.
NekDouble	m_lastCheckTime
NekDouble	m_TimeIncrementFactor
int	m_nchk
	Number of checkpoints written so far.
int	m_steps
	Number of steps to take.
int	m_checksteps
	Number of steps between checkpoints.
int	m_infosteps
	Number of time steps between outputting status information.
int	m_iterPIT = 0
	Number of parallel-in-time time iteration.
int	m_windowPIT = 0
	Index of windows for parallel-in-time time iteration.
int	m_spacedim
	Spatial dimension (>= expansion dim).
int	m_expdim
	Expansion dimension.
bool	m_singleMode
	Flag to determine if single homogeneous mode is used.
bool	m_halfMode
	Flag to determine if half homogeneous mode is used.
bool	m_multipleModes
	Flag to determine if use multiple homogenenous modes are used.
bool	m_useFFT
	Flag to determine if FFT is used for homogeneous transform.
bool	m_homogen_dealiasing
	Flag to determine if dealiasing is used for homogeneous simulations.
bool	m_specHP_dealiasing
	Flag to determine if dealisising is usde for the Spectral/hp element discretisation.
enum MultiRegions::ProjectionType	m_projectionType
	Type of projection; e.g continuous or discontinuous.
Array< OneD, Array< OneD, NekDouble > >	m_traceNormals
	Array holding trace normals for DG simulations in the forwards direction.
Array< OneD, bool >	m_checkIfSystemSingular
	Flag to indicate if the fields should be checked for singularity.
LibUtilities::FieldMetaDataMap	m_fieldMetaDataMap
	Map to identify relevant solver info to dump in output fields.
Array< OneD, NekDouble >	m_movingFrameData
	Moving reference frame status in the inertial frame X, Y, Z, Theta_x, Theta_y, Theta_z, U, V, W, Omega_x, Omega_y, Omega_z, A_x, A_y, A_z, DOmega_x, DOmega_y, DOmega_z, pivot_x, pivot_y, pivot_z.
std::vector< std::string >	m_strFrameData
	variable name in m_movingFrameData
int	m_NumQuadPointsError
	Number of Quadrature points used to work out the error.
enum HomogeneousType	m_HomogeneousType
NekDouble	m_LhomX
	physical length in X direction (if homogeneous)
NekDouble	m_LhomY
	physical length in Y direction (if homogeneous)
NekDouble	m_LhomZ
	physical length in Z direction (if homogeneous)
int	m_npointsX
	number of points in X direction (if homogeneous)
int	m_npointsY
	number of points in Y direction (if homogeneous)
int	m_npointsZ
	number of points in Z direction (if homogeneous)
int	m_HomoDirec
	number of homogenous directions
Static Protected Attributes inherited from Nektar::SolverUtils::EquationSystem
static std::string	equationSystemTypeLookupIds []
static std::string	projectionTypeLookupIds []

Detailed Description

Dummy equation system that can be used for Python testing.

This class simply evaluates a known function as the implementation as part of the DoInitialise method.

Definition at line 50 of file Python/EquationSystem.cpp.

Constructor & Destructor Documentation

~DummyEquationSystem()

DummyEquationSystem::~DummyEquationSystem ( )

inlineoverride

Definition at line 69 of file Python/EquationSystem.cpp.

    {
    }

DummyEquationSystem()

DummyEquationSystem::DummyEquationSystem ( const LibUtilities::SessionReaderSharedPtr &  pSession, const SpatialDomains::MeshGraphSharedPtr &  pGraph  )

inlineprotected

Definition at line 74 of file Python/EquationSystem.cpp.

        : EquationSystem(pSession, pGraph)
    {
    }

Member Function Documentation

create()

static SolverUtils::EquationSystemSharedPtr DummyEquationSystem::create ( const LibUtilities::SessionReaderSharedPtr &  pSession, const SpatialDomains::MeshGraphSharedPtr &  pGraph  )

inlinestatic

Creates an instance of this class.

Definition at line 56 of file Python/EquationSystem.cpp.

    {
        EquationSystemSharedPtr p =
            MemoryManager<DummyEquationSystem>::AllocateSharedPtr(pSession,
                                                                  pGraph);
        p->InitObject();
        return p;
    }

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

v_InitObject()

void DummyEquationSystem::v_InitObject ( bool  DeclareFeld )

inlineoverrideprotectedvirtual

Initialisation object for EquationSystem.

Continuous field

Setting up the normals

Setting up the normals

Reimplemented from Nektar::SolverUtils::EquationSystem.

Definition at line 80 of file Python/EquationSystem.cpp.

    {
        EquationSystem::v_InitObject(DeclareField);
 
        for (int i = 0; i < m_fields.size(); ++i)
        {
            int nq = m_fields[0]->GetNpoints();
 
            Array<OneD, NekDouble> x(nq), y(nq), z(nq);
            m_fields[i]->GetCoords(x, y, z);
 
            for (int j = 0; j < nq; ++j)
            {
                m_fields[i]->UpdatePhys()[j] = sin(x[j]) * sin(y[j]);
            }
 
            m_fields[i]->FwdTrans(m_fields[i]->GetPhys(),
                                  m_fields[i]->UpdateCoeffs());
        }
    }

References Nektar::SolverUtils::EquationSystem::m_fields, and Nektar::SolverUtils::EquationSystem::v_InitObject().

Friends And Related Symbol Documentation

MemoryManager< DummyEquationSystem >

friend class MemoryManager< DummyEquationSystem >

friend

Definition at line 149 of file Python/EquationSystem.cpp.

Member Data Documentation

className

std::string DummyEquationSystem::className

static

Initial value:

=
    SolverUtils::GetEquationSystemFactory().RegisterCreatorFunction(
        "Dummy", DummyEquationSystem::create, "Dummy equation system.")

Name of class.

Definition at line 67 of file Python/EquationSystem.cpp.