Nektar++
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A base class for describing how to solve specific equations. More...
#include <EquationSystem.h>
Protected Types | |
enum | HomogeneousType { eHomogeneous1D , eHomogeneous2D , eHomogeneous3D , eNotHomogeneous } |
Parameter for homogeneous expansions. More... | |
Protected Member Functions | |
SOLVER_UTILS_EXPORT | EquationSystem (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph) |
Initialises EquationSystem class members. More... | |
virtual SOLVER_UTILS_EXPORT void | v_InitObject (bool DeclareFeld=true) |
Initialisation object for EquationSystem. More... | |
virtual SOLVER_UTILS_EXPORT void | v_DoInitialise (bool dumpInitialConditions=true) |
Virtual function for initialisation implementation. More... | |
virtual SOLVER_UTILS_EXPORT void | v_DoSolve () |
Virtual function for solve implementation. More... | |
virtual SOLVER_UTILS_EXPORT NekDouble | v_LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray) |
Virtual function for the L_inf error computation between fields and a given exact solution. More... | |
virtual SOLVER_UTILS_EXPORT NekDouble | v_L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false) |
Virtual function for the L_2 error computation between fields and a given exact solution. More... | |
virtual SOLVER_UTILS_EXPORT NekDouble | v_H1Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false) |
Virtual function for the H_1 error computation between fields and a given exact solution. More... | |
virtual SOLVER_UTILS_EXPORT void | v_TransCoeffToPhys () |
Virtual function for transformation to physical space. More... | |
virtual SOLVER_UTILS_EXPORT void | v_TransPhysToCoeff () |
Virtual function for transformation to coefficient space. More... | |
virtual SOLVER_UTILS_EXPORT void | v_GenerateSummary (SummaryList &l) |
Virtual function for generating summary information. More... | |
virtual SOLVER_UTILS_EXPORT void | v_SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0) |
virtual SOLVER_UTILS_EXPORT void | v_EvaluateExactSolution (unsigned int field, Array< OneD, NekDouble > &outfield, const NekDouble time) |
virtual SOLVER_UTILS_EXPORT void | v_Output (void) |
virtual SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr | v_GetPressure (void) |
virtual SOLVER_UTILS_EXPORT bool | v_NegatedOp (void) |
Virtual function to identify if operator is negated in DoSolve. More... | |
virtual SOLVER_UTILS_EXPORT void | v_ExtraFldOutput (std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables) |
Protected Attributes | |
LibUtilities::CommSharedPtr | m_comm |
Communicator. More... | |
bool | m_verbose |
LibUtilities::SessionReaderSharedPtr | m_session |
The session reader. More... | |
std::map< std::string, SolverUtils::SessionFunctionSharedPtr > | m_sessionFunctions |
Map of known SessionFunctions. More... | |
LibUtilities::FieldIOSharedPtr | m_fld |
Field input/output. More... | |
Array< OneD, MultiRegions::ExpListSharedPtr > | m_fields |
Array holding all dependent variables. More... | |
SpatialDomains::BoundaryConditionsSharedPtr | m_boundaryConditions |
Pointer to boundary conditions object. More... | |
SpatialDomains::MeshGraphSharedPtr | m_graph |
Pointer to graph defining mesh. More... | |
std::string | m_sessionName |
Name of the session. More... | |
NekDouble | m_time |
Current time of simulation. More... | |
int | m_initialStep |
Number of the step where the simulation should begin. More... | |
NekDouble | m_fintime |
Finish time of the simulation. More... | |
NekDouble | m_timestep |
Time step size. More... | |
NekDouble | m_lambda |
Lambda constant in real system if one required. More... | |
NekDouble | m_checktime |
Time between checkpoints. More... | |
NekDouble | m_lastCheckTime |
NekDouble | m_TimeIncrementFactor |
int | m_nchk |
Number of checkpoints written so far. More... | |
int | m_steps |
Number of steps to take. More... | |
int | m_checksteps |
Number of steps between checkpoints. More... | |
int | m_infosteps |
Number of time steps between outputting status information. More... | |
int | m_iterPIT = 0 |
Number of parallel-in-time time iteration. More... | |
int | m_windowPIT = 0 |
Index of windows for parallel-in-time time iteration. More... | |
int | m_spacedim |
Spatial dimension (>= expansion dim). More... | |
int | m_expdim |
Expansion dimension. More... | |
bool | m_singleMode |
Flag to determine if single homogeneous mode is used. More... | |
bool | m_halfMode |
Flag to determine if half homogeneous mode is used. More... | |
bool | m_multipleModes |
Flag to determine if use multiple homogenenous modes are used. More... | |
bool | m_useFFT |
Flag to determine if FFT is used for homogeneous transform. More... | |
bool | m_homogen_dealiasing |
Flag to determine if dealiasing is used for homogeneous simulations. More... | |
bool | m_specHP_dealiasing |
Flag to determine if dealisising is usde for the Spectral/hp element discretisation. More... | |
enum MultiRegions::ProjectionType | m_projectionType |
Type of projection; e.g continuous or discontinuous. More... | |
Array< OneD, Array< OneD, NekDouble > > | m_traceNormals |
Array holding trace normals for DG simulations in the forwards direction. More... | |
Array< OneD, bool > | m_checkIfSystemSingular |
Flag to indicate if the fields should be checked for singularity. More... | |
LibUtilities::FieldMetaDataMap | m_fieldMetaDataMap |
Map to identify relevant solver info to dump in output fields. More... | |
Array< OneD, NekDouble > | m_movingFrameData |
Moving reference frame status in the inertial frame X, Y, Z, Theta_x, Theta_y, Theta_z, U, V, W, Omega_x, Omega_y, Omega_z, A_x, A_y, A_z, DOmega_x, DOmega_y, DOmega_z, pivot_x, pivot_y, pivot_z. More... | |
std::vector< std::string > | m_strFrameData |
variable name in m_movingFrameData More... | |
int | m_NumQuadPointsError |
Number of Quadrature points used to work out the error. More... | |
enum HomogeneousType | m_HomogeneousType |
NekDouble | m_LhomX |
physical length in X direction (if homogeneous) More... | |
NekDouble | m_LhomY |
physical length in Y direction (if homogeneous) More... | |
NekDouble | m_LhomZ |
physical length in Z direction (if homogeneous) More... | |
int | m_npointsX |
number of points in X direction (if homogeneous) More... | |
int | m_npointsY |
number of points in Y direction (if homogeneous) More... | |
int | m_npointsZ |
number of points in Z direction (if homogeneous) More... | |
int | m_HomoDirec |
number of homogenous directions More... | |
Static Protected Attributes | |
static std::string | equationSystemTypeLookupIds [] |
static std::string | projectionTypeLookupIds [] |
Private Member Functions | |
virtual SOLVER_UTILS_EXPORT Array< OneD, bool > | v_GetSystemSingularChecks () |
SOLVER_UTILS_EXPORT void | PrintProgressbar (const int position, const int goal) const |
A base class for describing how to solve specific equations.
This class is a base class for all solver implementations. It provides the underlying generic functionality and interface for solving equations.
To solve a steady-state equation, create a derived class from this class and reimplement the virtual functions to provide custom implementation for the problem.
To solve unsteady problems, derive from the UnsteadySystem class instead which provides general time integration.
Definition at line 75 of file EquationSystem.h.
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Parameter for homogeneous expansions.
Enumerator | |
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eHomogeneous1D | |
eHomogeneous2D | |
eHomogeneous3D | |
eNotHomogeneous |
Definition at line 548 of file EquationSystem.h.
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Destructor.
Destructor for class EquationSystem.
Definition at line 132 of file EquationSystem.cpp.
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Initialises EquationSystem class members.
This constructor is protected as the objects of this class are never instantiated directly.
pSession | The session reader holding problem parameters. |
Definition at line 110 of file EquationSystem.cpp.
References m_fieldMetaDataMap, and m_session.
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Definition at line 124 of file EquationSystem.h.
void Nektar::SolverUtils::EquationSystem::Checkpoint_BaseFlow | ( | const int | n | ) |
Write base flow file of m_fields.
Write the n-th base flow into a .chk file
n | The index of the base flow file. |
Definition at line 1304 of file EquationSystem.cpp.
References m_sessionName, and WriteFld().
void Nektar::SolverUtils::EquationSystem::Checkpoint_Output | ( | const int | n | ) |
Write checkpoint file of m_fields.
Write the n-th checkpoint file.
n | The index of the checkpoint file. |
Definition at line 1253 of file EquationSystem.cpp.
References CG_Iterations::loc, m_comm, m_iterPIT, m_session, m_sessionName, and WriteFld().
Referenced by Nektar::SolverUtils::FileSolution::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), Nektar::CoupledLinearNS::v_DoSolve(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), and Nektar::NonlinearPeregrine::v_SetInitialConditions().
void Nektar::SolverUtils::EquationSystem::Checkpoint_Output | ( | const int | n, |
MultiRegions::ExpListSharedPtr & | field, | ||
std::vector< Array< OneD, NekDouble > > & | fieldcoeffs, | ||
std::vector< std::string > & | variables | ||
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Write checkpoint file of custom data fields.
Write the n-th checkpoint file.
n | The index of the checkpoint file. |
Definition at line 1283 of file EquationSystem.cpp.
References ASSERTL0, FilterPython_Function::field, m_comm, m_sessionName, and WriteFld().
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Definition at line 683 of file EquationSystem.h.
References m_fields, and Vmath::Vcopy().
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Definition at line 689 of file EquationSystem.h.
References m_fields, and Vmath::Vcopy().
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Perform any initialisation necessary before solving the problem.
Definition at line 88 of file EquationSystem.h.
References v_DoInitialise().
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Solve the problem.
Definition at line 95 of file EquationSystem.h.
References v_DoSolve().
Array< OneD, NekDouble > Nektar::SolverUtils::EquationSystem::ErrorExtraPoints | ( | unsigned int | field | ) |
Compute error (L2 and L_inf) over an larger set of quadrature points return [L2 Linf].
Compute the error in the L2-, Linf- and H1-norm for a larger number of quadrature points.
field | The field to compare. |
Definition at line 974 of file EquationSystem.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::LibUtilities::eGaussLobattoLegendre, Nektar::LibUtilities::eModified_A, Nektar::LibUtilities::eModified_B, Nektar::LibUtilities::eQuadrilateral, Nektar::LibUtilities::eTriangle, FilterPython_Function::field, GetNumExpModes(), m_fields, m_graph, m_NumQuadPointsError, m_session, and m_time.
Referenced by v_H1Error(), Nektar::MMFSWE::v_L2Error(), v_L2Error(), and v_LinfError().
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Evaluates an exact solution.
Definition at line 179 of file EquationSystem.h.
References FilterPython_Function::field, and v_EvaluateExactSolution().
Referenced by Nektar::PulseWaveSystem::v_L2Error(), Nektar::MMFSWE::v_LinfError(), and Nektar::PulseWaveSystem::v_LinfError().
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Definition at line 147 of file EquationSystem.h.
References v_ExtraFldOutput().
Referenced by WriteFld().
FwdTrans the m_fields members
Definition at line 1239 of file EquationSystem.cpp.
References m_fields.
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Definition at line 386 of file EquationSystem.h.
References m_nchk.
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Definition at line 396 of file EquationSystem.h.
References m_checksteps.
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Definition at line 336 of file EquationSystem.h.
References m_fields.
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Definition at line 326 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::LinearSWE::CopyBoundaryTrace(), Nektar::SolverUtils::MMFSystem::CopyBoundaryTrace(), Nektar::AcousticSystem::CopyBoundaryTrace(), Nektar::CompressibleFlowSystem::GetStabilityLimitVector(), Nektar::UnsteadyAdvectionDiffusion::SubStepAdvance(), Nektar::ShallowWaterSystem::WallBoundary2D(), and Nektar::MMFSWE::WallBoundary2D().
SessionFunctionSharedPtr Nektar::SolverUtils::EquationSystem::GetFunction | ( | std::string | name, |
const MultiRegions::ExpListSharedPtr & | field = MultiRegions::NullExpListSharedPtr , |
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bool | cache = false |
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Get a SessionFunction by name.
Definition at line 741 of file EquationSystem.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), FilterPython_Function::field, m_fields, m_session, m_sessionFunctions, and CellMLToNektar.pycml::name.
Referenced by Nektar::CoupledLinearNS::DefineForcingTerm(), Nektar::MMFSWE::EvaluateCoriolis(), Nektar::ShallowWaterSystem::EvaluateCoriolis(), Nektar::ShallowWaterSystem::EvaluateWaterDepth(), Nektar::SmoothedProfileMethod::ReadPhi(), Nektar::VelocityCorrectionScheme::SetUpSVV(), Nektar::SteadyAdvectionDiffusion::v_DoInitialise(), Nektar::CoupledLinearNS::v_DoInitialise(), Nektar::LinearElasticSystem::v_DoSolve(), v_EvaluateExactSolution(), Nektar::Poisson::v_GenerateSummary(), v_H1Error(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::BidomainRoth::v_InitObject(), Nektar::Monodomain::v_InitObject(), Nektar::APE::v_InitObject(), Nektar::LEE::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::MMFAdvection::v_InitObject(), Nektar::Poisson::v_InitObject(), Nektar::Projection::v_InitObject(), Nektar::SteadyAdvectionDiffusion::v_InitObject(), Nektar::UnsteadyAdvection::v_InitObject(), v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), v_LinfError(), Nektar::PulseWaveSystem::v_LinfError(), Nektar::Dummy::v_PostIntegrate(), Nektar::AcousticSystem::v_PreIntegrate(), and v_SetInitialConditions().
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Definition at line 406 of file EquationSystem.h.
References m_infosteps.
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Definition at line 283 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::ShallowWaterSystem::AddCoriolis(), Nektar::NonlinearSWE::AddVariableDepth(), Nektar::CoupledLinearNS::DefineForcingTerm(), Nektar::MMFAdvection::DoOdeProjection(), Nektar::UnsteadyDiffusion::DoOdeProjection(), Nektar::UnsteadyInviscidBurgers::DoOdeProjection(), Nektar::ShallowWaterSystem::DoOdeProjection(), Nektar::MMFMaxwell::DoOdeRhs(), Nektar::MMFSWE::DoOdeRhs(), Nektar::CFSImplicit::DoOdeRhsCoeff(), ImportFld(), ImportFldToMultiDomains(), Nektar::CFSImplicit::MultiplyElmtInvMassPlusSource(), Nektar::VelocityCorrectionScheme::SetupFlowrate(), Nektar::CoupledLinearNS::Solve(), Nektar::CoupledLinearNS::SolveLinearNS(), Nektar::CoupledLinearNS::SolveSteadyNavierStokes(), Nektar::CoupledLinearNS::SolveUnsteadyStokesSystem(), Nektar::LEE::v_AddLinTerm(), Nektar::NavierStokesCFE::v_DoDiffusion(), Nektar::NavierStokesImplicitCFE::v_DoDiffusionCoeff(), Nektar::NonlinearPeregrine::v_DoOdeRhs(), Nektar::EigenValuesAdvection::v_DoSolve(), Nektar::Laplace::v_DoSolve(), Nektar::Projection::v_DoSolve(), Nektar::SteadyAdvectionDiffusion::v_DoSolve(), Nektar::AcousticSystem::v_ExtraFldOutput(), Nektar::CoupledLinearNS::v_Output(), v_SetInitialConditions(), Nektar::MMFAdvection::WeakDGDirectionalAdvection(), Nektar::MMFMaxwell::WeakDGMaxwellDirDeriv(), Nektar::MMFSWE::WeakDGSWEDirDeriv(), WriteFld(), and Nektar::PulseWaveSystem::WriteVessels().
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Definition at line 288 of file EquationSystem.h.
References m_fields.
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Definition at line 351 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::SolverUtils::UnsteadySystem::AppendOutput1D(), Nektar::MMFMaxwell::ComputeMaterialMicroWaveCloak(), Nektar::MMFMaxwell::ComputeMaterialOpticalCloak(), Nektar::MMFMaxwell::ComputeRadCloak(), Nektar::SolverUtils::UnsteadySystem::DoDummyProjection(), Nektar::MMFAdvection::DoOdeProjection(), Nektar::UnsteadyAdvection::DoOdeProjection(), Nektar::UnsteadyDiffusion::DoOdeProjection(), Nektar::UnsteadyInviscidBurgers::DoOdeProjection(), Nektar::ImageWarpingSystem::DoOdeProjection(), Nektar::MMFMaxwell::DoOdeProjection(), Nektar::ShallowWaterSystem::DoOdeProjection(), Nektar::MMFAdvection::DoOdeRhs(), Nektar::UnsteadyInviscidBurgers::DoOdeRhs(), Nektar::UnsteadyViscousBurgers::DoOdeRhs(), Nektar::ImageWarpingSystem::DoOdeRhs(), Nektar::SolverUtils::FileSolution::DoOdeRhs(), Nektar::UnsteadyInviscidBurgers::GetFluxVector(), Nektar::UnsteadyInviscidBurgers::GetNormalVelocity(), Nektar::CFSImplicit::NumCalcRiemFluxJac(), Nektar::CoupledLinearNS::Solve(), Nektar::NavierStokesCFE::v_DoDiffusion(), Nektar::NavierStokesCFEAxisym::v_DoDiffusion(), Nektar::NavierStokesImplicitCFE::v_DoDiffusionCoeff(), Nektar::EigenValuesAdvection::v_DoSolve(), Nektar::LinearElasticSystem::v_DoSolve(), Nektar::SolverUtils::FileSolution::v_GetDensity(), v_H1Error(), Nektar::NavierStokesCFEAxisym::v_InitObject(), Nektar::MMFSWE::v_L2Error(), v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), v_LinfError(), Nektar::PulseWaveSystem::v_LinfError(), Nektar::MMFMaxwell::WeakDGMaxwellDirDeriv(), Nektar::MMFSWE::WeakDGSWEDirDeriv(), and ZeroPhysFields().
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Definition at line 293 of file EquationSystem.h.
References m_graph.
Referenced by ErrorExtraPoints().
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Definition at line 301 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::SolverUtils::AdvectionSystem::GetElmtCFLVals().
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Definition at line 306 of file EquationSystem.h.
References m_session.
Referenced by ImportFldToMultiDomains().
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Definition at line 331 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::CFSImplicit::AddMatNSBlkDiagVol(), and Nektar::IncNavierStokes::SetRadiationBoundaryForcing().
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Get pressure field if available.
Definition at line 142 of file EquationSystem.h.
References v_GetPressure().
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Definition at line 356 of file EquationSystem.h.
References m_steps.
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Definition at line 366 of file EquationSystem.h.
References m_timestep.
Referenced by Nektar::SolverUtils::UnsteadySystem::GetTimeStep().
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Definition at line 341 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::ShallowWaterSystem::AddCoriolis(), Nektar::SolverUtils::MMFSystem::AdddedtMaxwell(), Nektar::NonlinearSWE::AddVariableDepth(), Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), Nektar::SolverUtils::MMFSystem::Computedemdxicdote(), Nektar::MMFMaxwell::ComputeEnergyDensity(), Nektar::ShallowWaterSystem::ConservativeToPrimitive(), Nektar::MMFSWE::ConservativeToPrimitive(), Nektar::CoupledLinearNS::Continuation(), Nektar::CoupledLinearNS::DefineForcingTerm(), Nektar::SolverUtils::MMFSystem::DeriveCrossProductMF(), Nektar::AcousticSystem::DoOdeRhs(), Nektar::MMFDiffusion::DoOdeRhs(), Nektar::Dummy::DoOdeRhs(), Nektar::MMFMaxwell::DoOdeRhs(), Nektar::MMFSWE::DoOdeRhs(), Nektar::MMFMaxwell::EvaluateCoriolis(), Nektar::MMFSWE::EvaluateCoriolisForZonalFlow(), Nektar::CompressibleFlowSystem::EvaluateIsentropicVortex(), Nektar::CoupledLinearNS::EvaluateNewtonRHS(), Nektar::MMFSWE::EvaluateStandardCoriolis(), Nektar::MMFSWE::EvaluateWaterDepth(), Nektar::CompressibleFlowSystem::GetExactRinglebFlow(), Nektar::MMFSWE::IsolatedMountainFlow(), Nektar::NonlinearPeregrine::LaitoneSolitaryWave(), Nektar::MMFDiffusion::Morphogenesis(), Nektar::CFSImplicit::MultiplyElmtInvMassPlusSource(), Nektar::MMFDiffusion::PlanePhiWave(), Nektar::ShallowWaterSystem::PrimitiveToConservative(), Nektar::MMFSWE::PrimitiveToConservative(), Nektar::MMFSWE::RossbyWave(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), Nektar::CoupledLinearNS::SolveSteadyNavierStokes(), Nektar::MMFSWE::SteadyZonalFlow(), Nektar::MMFDiffusion::TestCubeProblem(), Nektar::MMFDiffusion::TestPlaneProblem(), Nektar::MMFSWE::UnstableJetFlow(), Nektar::MMFSWE::UnsteadyZonalFlow(), Nektar::LEE::v_AddLinTerm(), Nektar::UnsteadyAdvection::v_ALEInitObject(), Nektar::UnsteadyAdvectionDiffusion::v_ALEInitObject(), Nektar::CompressibleFlowSystem::v_ALEInitObject(), Nektar::CFSImplicit::v_ALEInitObject(), Nektar::NavierStokesImplicitCFE::v_CalcPhysDeriv(), Nektar::VCSImplicit::v_DoInitialise(), Nektar::CoupledLinearNS::v_DoInitialise(), Nektar::VCSMapping::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::LinearSWE::v_DoOdeRhs(), Nektar::NonlinearPeregrine::v_DoOdeRhs(), Nektar::NonlinearSWE::v_DoOdeRhs(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::SteadyAdvectionDiffusion::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::MMFDiffusion::v_EvaluateExactSolution(), Nektar::CompressibleFlowSystem::v_GetMaxStdVelocity(), Nektar::APE::v_InitObject(), Nektar::LEE::v_InitObject(), Nektar::ShallowWaterSystem::v_InitObject(), v_L2Error(), Nektar::Dummy::v_Output(), Nektar::MMFMaxwell::v_SetInitialConditions(), Nektar::MMFSWE::v_SetInitialConditions(), Nektar::MMFDiffusion::v_SetInitialConditions(), Nektar::SolverUtils::UnsteadySystem::v_SteadyStateResidual(), and Nektar::CompressibleFlowSystem::v_SteadyStateResidual().
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Definition at line 346 of file EquationSystem.h.
References m_fields.
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Definition at line 426 of file EquationSystem.h.
References m_traceNormals.
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Definition at line 321 of file EquationSystem.h.
References m_fields.
Referenced by Nektar::SolverUtils::MMFSystem::ComputencdotMF(), Nektar::SolverUtils::MMFSystem::ComputeNtimesMF(), Nektar::SolverUtils::MMFSystem::ComputeZimYim(), Nektar::UnsteadyAdvection::GetNormalVel(), Nektar::EigenValuesAdvection::GetNormalVelocity(), Nektar::MMFAdvection::GetNormalVelocity(), Nektar::UnsteadyInviscidBurgers::GetNormalVelocity(), Nektar::ImageWarpingSystem::GetNormalVelocity(), GetTraceTotPoints(), Nektar::MMFMaxwell::v_DoSolve(), v_InitObject(), Nektar::ImageWarpingSystem::v_InitObject(), Nektar::APE::v_InitObject(), Nektar::LEE::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::MMFAdvection::v_InitObject(), Nektar::UnsteadyAdvection::v_InitObject(), Nektar::UnsteadyAdvectionDiffusion::v_InitObject(), Nektar::UnsteadyInviscidBurgers::v_InitObject(), Nektar::UnsteadyViscousBurgers::v_InitObject(), Nektar::MMFAdvection::WeakDGDirectionalAdvection(), Nektar::MMFMaxwell::WeakDGMaxwellDirDeriv(), and Nektar::MMFSWE::WeakDGSWEDirDeriv().
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Definition at line 316 of file EquationSystem.h.
References GetTraceNpoints().
Referenced by Nektar::SolverUtils::MMFSystem::AverageMaxwellFlux1D(), Nektar::SolverUtils::MMFSystem::ComputeMFtrace(), Nektar::SolverUtils::MMFSystem::ComputeNtimesF12(), Nektar::SolverUtils::MMFSystem::ComputeNtimesFz(), Nektar::SolverUtils::MMFSystem::ComputeNtimestimesdF12(), Nektar::SolverUtils::MMFSystem::ComputeNtimestimesdFz(), Nektar::MMFMaxwell::ComputeSurfaceCurrent(), Nektar::CompressibleFlowSystem::DoOdeRhs(), Nektar::CFSImplicit::DoOdeRhsCoeff(), Nektar::CFSImplicit::GetTraceJac(), Nektar::SolverUtils::MMFSystem::LaxFriedrichMaxwellFlux1D(), Nektar::CFSImplicit::NumCalcRiemFluxJac(), Nektar::NonlinearPeregrine::NumericalFluxConsVariables(), Nektar::NonlinearPeregrine::NumericalFluxForcing(), Nektar::SolverUtils::MMFSystem::NumericalMaxwellFluxTE(), Nektar::SolverUtils::MMFSystem::NumericalMaxwellFluxTM(), Nektar::MMFSWE::NumericalSWEFlux(), Nektar::MMFMaxwell::Printout_SurfaceCurrent(), Nektar::AcousticSystem::SetBoundaryConditions(), Nektar::CompressibleFlowSystem::SetBoundaryConditions(), Nektar::ShallowWaterSystem::SetBoundaryConditions(), Nektar::SolverUtils::MMFSystem::UpwindMaxwellFlux1D(), Nektar::NavierStokesCFE::v_DoDiffusion(), Nektar::NavierStokesImplicitCFE::v_DoDiffusionCoeff(), Nektar::NonlinearPeregrine::v_DoOdeRhs(), Nektar::NavierStokesCFE::v_ExtraFldOutput(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::MMFSWE::WallBoundary2D(), Nektar::NonlinearPeregrine::WallBoundaryContVariables(), and Nektar::NonlinearPeregrine::WallBoundaryForcing().
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Definition at line 311 of file EquationSystem.h.
References m_session.
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Compute the H1 error between fields and a given exact solution.
Definition at line 212 of file EquationSystem.h.
References FilterPython_Function::field, and v_H1Error().
void Nektar::SolverUtils::EquationSystem::ImportFld | ( | const std::string & | infile, |
Array< OneD, MultiRegions::ExpListSharedPtr > & | pFields | ||
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Input field data from the given file.
Import field from infile and load into m_fields. This routine will also perform a BwdTrans to ensure data is in both the physical and coefficient storage.
infile | Filename to read. |
Definition at line 1413 of file EquationSystem.cpp.
References ASSERTL1, Nektar::LibUtilities::FieldIO::CreateForFile(), GetNcoeffs(), m_fields, m_session, and Vmath::Zero().
void Nektar::SolverUtils::EquationSystem::ImportFld | ( | const std::string & | infile, |
MultiRegions::ExpListSharedPtr & | pField, | ||
std::string & | pFieldName | ||
) |
Output a field. Input field data into ExpList from the given file.
Import field from infile and load into pField. This routine will also perform a BwdTrans to ensure data is in both the physical and coefficient storage.
Definition at line 1497 of file EquationSystem.cpp.
References ASSERTL1, Nektar::LibUtilities::FieldIO::CreateForFile(), m_fields, m_session, and Vmath::Zero().
void Nektar::SolverUtils::EquationSystem::ImportFld | ( | const std::string & | infile, |
std::vector< std::string > & | fieldStr, | ||
Array< OneD, Array< OneD, NekDouble > > & | coeffs | ||
) |
Output a field. Input field data into array from the given file.
Import field from infile and load into the array coeffs.
infile | Filename to read. |
fieldStr | an array of string identifying fields to be imported |
coeffs | array of array of coefficients to store imported data |
Definition at line 1537 of file EquationSystem.cpp.
References ASSERTL0, Nektar::LibUtilities::FieldIO::CreateForFile(), m_fields, m_session, and Vmath::Zero().
void Nektar::SolverUtils::EquationSystem::ImportFldToMultiDomains | ( | const std::string & | infile, |
Array< OneD, MultiRegions::ExpListSharedPtr > & | pFields, | ||
const int | ndomains | ||
) |
Input field data from the given file to multiple domains.
Import field from infile and load into m_fields. This routine will also perform a BwdTrans to ensure data is in both the physical and coefficient storage.
infile | Filename to read. If optionan ndomains is specified it assumes we loop over nodmains for each nvariables. |
Definition at line 1451 of file EquationSystem.cpp.
References ASSERTL0, ASSERTL1, GetNcoeffs(), GetNvariables(), Nektar::LibUtilities::Import(), m_fields, m_session, and Vmath::Zero().
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Initialises the members of this object.
Definition at line 82 of file EquationSystem.h.
References v_InitObject().
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Compute the L2 error of the fields.
Definition at line 195 of file EquationSystem.h.
References FilterPython_Function::field, L2Error(), and Nektar::NullNekDouble1DArray.
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Compute the L2 error between fields and a given exact solution.
Definition at line 188 of file EquationSystem.h.
References FilterPython_Function::field, and v_L2Error().
Referenced by L2Error().
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Linf error computation.
Definition at line 203 of file EquationSystem.h.
References FilterPython_Function::field, and v_LinfError().
Referenced by Nektar::MMFSWE::v_LinfError().
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Identify if operator is negated in DoSolve.
Definition at line 450 of file EquationSystem.h.
References v_NegatedOp().
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Perform output operations after solve.
Definition at line 113 of file EquationSystem.h.
References v_Output().
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Definition at line 639 of file EquationSystem.h.
References Nektar::LibUtilities::PrintProgressbar().
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Print a summary of parameters and solver characteristics.
Prints a summary of variables and problem parameters.
Public interface routine to virtual function implementation.
out | The ostream object to write to. |
Definition at line 653 of file EquationSystem.h.
References m_session, and v_GenerateSummary().
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void Nektar::SolverUtils::EquationSystem::SessionSummary | ( | SummaryList & | s | ) |
Write out a session summary.
Write out a summary of the session data.
out | Output stream to write data to. |
Definition at line 1568 of file EquationSystem.cpp.
References Nektar::SolverUtils::AddSummaryItem(), Nektar::MultiRegions::eDiscontinuous, Nektar::MultiRegions::eGalerkin, eHomogeneous1D, eHomogeneous2D, Nektar::MultiRegions::eMixed_CG_Discontinuous, Nektar::SolverUtils::GetAdvectionFactory(), Nektar::SolverUtils::GetDiffusionFactory(), m_expdim, m_fields, m_halfMode, m_HomogeneousType, m_LhomY, m_LhomZ, m_multipleModes, m_npointsY, m_npointsZ, m_projectionType, m_session, m_sessionName, m_singleMode, m_spacedim, and m_useFFT.
Referenced by Nektar::Laplace::v_GenerateSummary(), Nektar::Projection::v_GenerateSummary(), Nektar::LinearElasticSystem::v_GenerateSummary(), and v_GenerateSummary().
Evaluates the boundary conditions at the given time.
If boundary conditions are time-dependent, they will be evaluated at the time specified.
time | The time at which to evaluate the BCs |
Definition at line 775 of file EquationSystem.cpp.
References m_fields, and m_session.
Referenced by Nektar::UnsteadyAdvectionDiffusion::DoImplicitSolve(), Nektar::UnsteadyViscousBurgers::DoImplicitSolve(), Nektar::MMFDiffusion::DoImplicitSolve(), Nektar::MMFAdvection::DoOdeProjection(), Nektar::UnsteadyAdvection::DoOdeProjection(), Nektar::UnsteadyDiffusion::DoOdeProjection(), Nektar::UnsteadyInviscidBurgers::DoOdeProjection(), Nektar::ImageWarpingSystem::DoOdeProjection(), Nektar::ShallowWaterSystem::DoOdeProjection(), Nektar::PulseWavePropagation::SetPulseWaveBoundaryConditions(), Nektar::SolverUtils::FileSolution::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoInitialise(), and Nektar::SolverUtils::UnsteadySystem::v_DoSolve().
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Definition at line 401 of file EquationSystem.h.
References m_checksteps.
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Definition at line 411 of file EquationSystem.h.
References m_infosteps.
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Initialise the data in the dependent fields.
Definition at line 171 of file EquationSystem.h.
References v_SetInitialConditions().
Referenced by main(), Nektar::PulseWaveSystem::v_DoInitialise(), Nektar::MMFSWE::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoInitialise(), and Nektar::CoupledLinearNS::v_DoInitialise().
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Definition at line 441 of file EquationSystem.h.
References m_initialStep.
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Definition at line 416 of file EquationSystem.h.
References m_iterPIT.
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Definition at line 361 of file EquationSystem.h.
References m_steps.
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Definition at line 436 of file EquationSystem.h.
References m_timestep.
Referenced by Nektar::SolverUtils::UnsteadySystem::SetTimeStep().
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Definition at line 421 of file EquationSystem.h.
References m_windowPIT.
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Transform from coefficient to physical space.
Definition at line 101 of file EquationSystem.h.
References v_TransCoeffToPhys().
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Transform from physical to coefficient space.
Definition at line 107 of file EquationSystem.h.
References v_TransPhysToCoeff().
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Get hold of FieldInfoMap so it can be updated.
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Definition at line 677 of file EquationSystem.h.
References m_fields.
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Definition at line 695 of file EquationSystem.h.
References m_fields.
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Virtual function for initialisation implementation.
By default, nothing needs initialising at the EquationSystem level.
Reimplemented in Nektar::VCSImplicit, Nektar::SolverUtils::FileSolution, Nektar::EigenValuesAdvection, Nektar::SteadyAdvectionDiffusion, Nektar::PulseWaveSystem, Nektar::MMFSWE, Nektar::SolverUtils::UnsteadySystem, Nektar::CoupledLinearNS, Nektar::VCSMapping, and Nektar::VelocityCorrectionScheme.
Definition at line 1158 of file EquationSystem.cpp.
Referenced by DoInitialise().
Virtual function for solve implementation.
Reimplemented in Nektar::SolverUtils::UnsteadySystem, Nektar::EigenValuesAdvection, Nektar::Laplace, Nektar::MMFAdvection, Nektar::Projection, Nektar::SteadyAdvectionDiffusion, Nektar::CFSImplicit, Nektar::IterativeElasticSystem, Nektar::LinearElasticSystem, Nektar::MMFMaxwell, Nektar::PulseWaveSystem, Nektar::MMFSWE, and Nektar::CoupledLinearNS.
Definition at line 1165 of file EquationSystem.cpp.
Referenced by DoSolve().
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Reimplemented in Nektar::MMFAdvection, Nektar::MMFDiffusion, Nektar::MMFMaxwell, Nektar::MMFSWE, and Nektar::CompressibleFlowSystem.
Definition at line 1141 of file EquationSystem.cpp.
References ASSERTL0, FilterPython_Function::field, GetFunction(), m_fields, m_session, and Vmath::Zero().
Referenced by EvaluateExactSolution(), Nektar::MMFDiffusion::v_EvaluateExactSolution(), and Nektar::CompressibleFlowSystem::v_EvaluateExactSolution().
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Reimplemented in Nektar::AcousticSystem, Nektar::UnsteadyAdvection, Nektar::UnsteadyAdvectionDiffusion, Nektar::CompressibleFlowSystem, Nektar::NavierStokesCFE, and Nektar::LinearElasticSystem.
Definition at line 1679 of file EquationSystem.cpp.
Referenced by ExtraFldOutput().
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Virtual function for generating summary information.
Reimplemented in Nektar::Helmholtz, Nektar::Laplace, Nektar::MMFAdvection, Nektar::Poisson, Nektar::Projection, Nektar::SteadyAdvectionDiffusion, Nektar::SteadyAdvectionDiffusionReaction, Nektar::UnsteadyAdvection, Nektar::UnsteadyAdvectionDiffusion, Nektar::UnsteadyInviscidBurgers, Nektar::UnsteadyViscousBurgers, Nektar::CompressibleFlowSystem, Nektar::MMFDiffusion, Nektar::ImageWarpingSystem, Nektar::CoupledLinearNS, Nektar::SmoothedProfileMethod, Nektar::VelocityCorrectionScheme, Nektar::VCSImplicit, Nektar::VCSWeakPressure, Nektar::IterativeElasticSystem, Nektar::LinearElasticSystem, Nektar::MMFMaxwell, Nektar::PulseWavePropagation, Nektar::LinearSWE, Nektar::MMFSWE, Nektar::NonlinearPeregrine, Nektar::NonlinearSWE, Nektar::ShallowWaterSystem, Nektar::SolverUtils::MMFSystem, Nektar::SolverUtils::UnsteadySystem, Nektar::UnsteadyDiffusion, Nektar::Bidomain, Nektar::BidomainRoth, and Nektar::Monodomain.
Definition at line 1194 of file EquationSystem.cpp.
References SessionSummary().
Referenced by PrintSummary(), and Nektar::SolverUtils::UnsteadySystem::v_GenerateSummary().
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Reimplemented in Nektar::CompressibleFlowSystem, and Nektar::IncNavierStokes.
Definition at line 1669 of file EquationSystem.cpp.
References ASSERTL0.
Referenced by GetPressure().
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Reimplemented in Nektar::Helmholtz, Nektar::Laplace, Nektar::Poisson, and Nektar::VelocityCorrectionScheme.
Definition at line 1661 of file EquationSystem.cpp.
References m_session.
Referenced by v_InitObject().
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Virtual function for the H_1 error computation between fields and a given exact solution.
Compute the error in the H1-norm.
field | The field to compare. |
exactsoln | The exact solution to compare with. |
Normalised | Normalise H1-error. |
Definition at line 919 of file EquationSystem.cpp.
References ErrorExtraPoints(), FilterPython_Function::field, GetFunction(), GetNpoints(), m_fields, m_NumQuadPointsError, m_session, m_time, and tinysimd::sqrt().
Referenced by H1Error().
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Initialisation object for EquationSystem.
Continuous field
Setting up the normals
Setting up the normals
Reimplemented in DummyEquationSystem, Nektar::PulseWavePropagation, Nektar::PulseWaveSystem, Nektar::SolverUtils::AdvectionSystem, Nektar::SolverUtils::UnsteadySystem, Nektar::Bidomain, Nektar::BidomainRoth, Nektar::Monodomain, Nektar::NavierStokesCFE, Nektar::MMFDiffusion, Nektar::ImageWarpingSystem, Nektar::CoupledLinearNS, Nektar::IncNavierStokes, Nektar::SmoothedProfileMethod, Nektar::VCSMapping, Nektar::VelocityCorrectionScheme, Nektar::SolverUtils::FileSolution, Nektar::AcousticSystem, Nektar::APE, Nektar::LEE, Nektar::EigenValuesAdvection, Nektar::Helmholtz, Nektar::Laplace, Nektar::MMFAdvection, Nektar::Poisson, Nektar::Projection, Nektar::SteadyAdvectionDiffusion, Nektar::SteadyAdvectionDiffusionReaction, Nektar::UnsteadyAdvection, Nektar::UnsteadyAdvectionDiffusion, Nektar::UnsteadyDiffusion, Nektar::UnsteadyInviscidBurgers, Nektar::UnsteadyReactionDiffusion, Nektar::UnsteadyViscousBurgers, Nektar::CompressibleFlowSystem, Nektar::CFSImplicit, Nektar::EulerCFE, Nektar::EulerImplicitCFE, Nektar::NavierStokesCFEAxisym, Nektar::NavierStokesImplicitCFE, Nektar::Dummy, Nektar::IterativeElasticSystem, Nektar::LinearElasticSystem, Nektar::MMFMaxwell, Nektar::LinearSWE, Nektar::MMFSWE, Nektar::NonlinearPeregrine, Nektar::NonlinearSWE, and Nektar::ShallowWaterSystem.
Definition at line 143 of file EquationSystem.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), ASSERTL0, Nektar::LibUtilities::FieldIO::CreateDefault(), Nektar::MultiRegions::eDiscontinuous, Nektar::LibUtilities::eFourier, Nektar::LibUtilities::eFourierEvenlySpaced, Nektar::LibUtilities::eFourierHalfModeIm, Nektar::LibUtilities::eFourierHalfModeRe, Nektar::LibUtilities::eFourierSingleMode, Nektar::LibUtilities::eFourierSingleModeSpaced, Nektar::MultiRegions::eGalerkin, eHomogeneous1D, eHomogeneous2D, eHomogeneous3D, Nektar::MultiRegions::eMixed_CG_Discontinuous, eNotHomogeneous, GetTraceNpoints(), m_boundaryConditions, m_checkIfSystemSingular, m_checksteps, m_checktime, m_comm, m_expdim, m_fields, m_fintime, m_fld, m_graph, m_halfMode, m_HomoDirec, m_homogen_dealiasing, m_HomogeneousType, m_iterPIT, m_LhomY, m_LhomZ, m_multipleModes, m_nchk, m_npointsY, m_npointsZ, m_NumQuadPointsError, m_projectionType, m_session, m_sessionName, m_singleMode, m_spacedim, m_specHP_dealiasing, m_steps, m_time, m_TimeIncrementFactor, m_timestep, m_traceNormals, m_useFFT, m_verbose, v_GetSystemSingularChecks(), and ZeroPhysFields().
Referenced by InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::Laplace::v_InitObject(), Nektar::Projection::v_InitObject(), Nektar::SteadyAdvectionDiffusion::v_InitObject(), and Nektar::LinearElasticSystem::v_InitObject().
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Virtual function for the L_2 error computation between fields and a given exact solution.
Compute the error in the L2-norm.
field | The field to compare. |
exactsoln | The exact solution to compare with. |
Normalised | Normalise L2-error. |
Reimplemented in Nektar::MMFSWE, and Nektar::PulseWaveSystem.
Definition at line 793 of file EquationSystem.cpp.
References ErrorExtraPoints(), FilterPython_Function::field, GetFunction(), GetNpoints(), GetTotPoints(), m_fields, m_NumQuadPointsError, m_session, m_time, and tinysimd::sqrt().
Referenced by L2Error().
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Virtual function for the L_inf error computation between fields and a given exact solution.
Compute the error in the L_inf-norm
field | The field to compare. |
exactsoln | The exact solution to compare with. |
Reimplemented in Nektar::MMFSWE, and Nektar::PulseWaveSystem.
Definition at line 869 of file EquationSystem.cpp.
References ErrorExtraPoints(), FilterPython_Function::field, GetFunction(), GetNpoints(), m_fields, m_NumQuadPointsError, m_session, and m_time.
Referenced by LinfError().
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Virtual function to identify if operator is negated in DoSolve.
Virtual function to define if operator in DoSolve is negated with regard to the strong form. This is currently only used in Arnoldi solves. Default is false.
Reimplemented in Nektar::CoupledLinearNS.
Definition at line 1174 of file EquationSystem.cpp.
Referenced by NegatedOp().
Write the field data to file. The file is named according to the session name with the extension .fld appended.
Reimplemented in Nektar::AcousticSystem, Nektar::Dummy, Nektar::CoupledLinearNS, and Nektar::PulseWaveSystem.
Definition at line 1203 of file EquationSystem.cpp.
References m_comm, m_sessionName, m_windowPIT, and WriteFld().
Referenced by Output(), Nektar::AcousticSystem::v_Output(), and Nektar::Dummy::v_Output().
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Set the physical fields based on a restart file, or a function describing the initial condition given in the session.
initialtime | Time at which to evaluate the function. |
dumpInitialConditions | Write the initial condition to file? |
Reimplemented in Nektar::MMFAdvection, Nektar::MMFMaxwell, Nektar::MMFSWE, Nektar::Bidomain, Nektar::BidomainRoth, Nektar::Monodomain, Nektar::CompressibleFlowSystem, Nektar::MMFDiffusion, and Nektar::NonlinearPeregrine.
Definition at line 1063 of file EquationSystem.cpp.
References Checkpoint_Output(), Nektar::MultiRegions::eGalerkin, Nektar::MultiRegions::eMixed_CG_Discontinuous, GetFunction(), GetNcoeffs(), m_checksteps, m_comm, m_fields, m_nchk, m_projectionType, m_session, m_sessionName, m_time, WriteFld(), and Vmath::Zero().
Referenced by SetInitialConditions(), Nektar::Bidomain::v_SetInitialConditions(), Nektar::BidomainRoth::v_SetInitialConditions(), Nektar::Monodomain::v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::MMFDiffusion::v_SetInitialConditions(), and Nektar::NonlinearPeregrine::v_SetInitialConditions().
Virtual function for transformation to physical space.
Reimplemented in Nektar::CoupledLinearNS, Nektar::IncNavierStokes, and Nektar::VelocityCorrectionScheme.
Definition at line 1182 of file EquationSystem.cpp.
Referenced by TransCoeffToPhys().
Virtual function for transformation to coefficient space.
Reimplemented in Nektar::CoupledLinearNS, Nektar::IncNavierStokes, and Nektar::VelocityCorrectionScheme.
Definition at line 1189 of file EquationSystem.cpp.
Referenced by TransPhysToCoeff().
void Nektar::SolverUtils::EquationSystem::WriteFld | ( | const std::string & | outname | ) |
Write field data to the given filename.
Writes the field data to a file with the given filename.
outname | Filename to write to. |
Definition at line 1315 of file EquationSystem.cpp.
References ExtraFldOutput(), GetNcoeffs(), m_boundaryConditions, m_fields, and WriteFld().
Referenced by Checkpoint_BaseFlow(), Nektar::MMFMaxwell::Checkpoint_EDFluxOutput(), Nektar::MMFMaxwell::Checkpoint_EnergyOutput(), Checkpoint_Output(), Nektar::MMFSWE::Checkpoint_Output_Cartesian(), Nektar::MMFMaxwell::Checkpoint_PlotOutput(), Nektar::MMFMaxwell::Checkpoint_TotalFieldOutput(), Nektar::MMFMaxwell::Checkpoint_TotPlotOutput(), Nektar::BidomainRoth::v_InitObject(), Nektar::Monodomain::v_InitObject(), v_Output(), Nektar::CoupledLinearNS::v_Output(), Nektar::SolverUtils::AdvectionSystem::v_PostIntegrate(), Nektar::MMFAdvection::v_SetInitialConditions(), Nektar::MMFMaxwell::v_SetInitialConditions(), Nektar::MMFSWE::v_SetInitialConditions(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::MMFDiffusion::v_SetInitialConditions(), Nektar::NonlinearPeregrine::v_SetInitialConditions(), and WriteFld().
void Nektar::SolverUtils::EquationSystem::WriteFld | ( | const std::string & | outname, |
MultiRegions::ExpListSharedPtr & | field, | ||
std::vector< Array< OneD, NekDouble > > & | fieldcoeffs, | ||
std::vector< std::string > & | variables | ||
) |
Write input fields to the given filename.
Writes the field data to a file with the given filename.
outname | Filename to write to. |
field | ExpList on which data is based. |
fieldcoeffs | An array of array of expansion coefficients. |
variables | An array of variable names. |
Definition at line 1347 of file EquationSystem.cpp.
References FilterPython_Function::field, Nektar::GlobalMapping::Mapping::Load(), m_fieldMetaDataMap, m_fld, m_movingFrameData, m_nchk, m_session, m_strFrameData, m_time, and Nektar::GlobalMapping::MappingSharedPtr.
Zero the physical fields.
Definition at line 1228 of file EquationSystem.cpp.
References GetNpoints(), m_fields, and Vmath::Zero().
Referenced by v_InitObject().
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Definition at line 633 of file EquationSystem.h.
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Pointer to boundary conditions object.
Definition at line 469 of file EquationSystem.h.
Referenced by Nektar::MMFMaxwell::Checkpoint_EDFluxOutput(), Nektar::MMFMaxwell::Checkpoint_EnergyOutput(), Nektar::MMFMaxwell::Checkpoint_TotalFieldOutput(), Nektar::MMFMaxwell::Checkpoint_TotPlotOutput(), Nektar::CoupledLinearNS::DefineForcingTerm(), Nektar::CoupledLinearNS::v_DoInitialise(), v_InitObject(), Nektar::CoupledLinearNS::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), Nektar::CoupledLinearNS::v_Output(), and WriteFld().
Flag to indicate if the fields should be checked for singularity.
Definition at line 531 of file EquationSystem.h.
Referenced by v_InitObject().
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Number of steps between checkpoints.
Definition at line 496 of file EquationSystem.h.
Referenced by GetCheckpointSteps(), SetCheckpointSteps(), Nektar::SolverUtils::FileSolution::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), Nektar::SolverUtils::UnsteadySystem::v_GenerateSummary(), v_InitObject(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), and Nektar::NonlinearPeregrine::v_SetInitialConditions().
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Time between checkpoints.
Definition at line 486 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), v_InitObject(), and Nektar::CFSImplicit::v_UpdateTimeStepCheck().
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Communicator.
Definition at line 457 of file EquationSystem.h.
Referenced by Nektar::CFSImplicit::CalcRefValues(), Nektar::ShallowWaterSystem::CalcRefValues(), Checkpoint_Output(), Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), Nektar::SolverUtils::AdvectionSystem::GetCFLEstimate(), Nektar::PulseWaveSystem::GetCommArray(), Nektar::CFSImplicit::InitialiseNonlinSysSolver(), Nektar::ShallowWaterSystem::InitialiseNonlinSysSolver(), Nektar::SolverUtils::UnsteadySystem::InitializeSteadyState(), Nektar::ShallowWaterSystem::MatrixMultiplyMatrixFree(), Nektar::CFSImplicit::MatrixMultiplyMatrixFreeCoeff(), Nektar::VelocityCorrectionScheme::MeasureFlowrate(), Nektar::PulseWaveSystem::SetUpDomainInterfaces(), Nektar::VelocityCorrectionScheme::SetupFlowrate(), Nektar::VelocityCorrectionScheme::SetUpSVV(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::CompressibleFlowSystem::v_GetTimeStep(), v_InitObject(), Nektar::IterativeElasticSystem::v_InitObject(), Nektar::MMFSWE::v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), Nektar::PulseWaveSystem::v_LinfError(), Nektar::Dummy::v_Output(), v_Output(), Nektar::CoupledLinearNS::v_Output(), Nektar::SolverUtils::AdvectionSystem::v_PostIntegrate(), Nektar::VelocityCorrectionScheme::v_PostIntegrate(), Nektar::SolverUtils::UnsteadySystem::v_PrintStatusInformation(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::NonlinearPeregrine::v_SetInitialConditions(), Nektar::SolverUtils::UnsteadySystem::v_SteadyStateResidual(), and Nektar::CompressibleFlowSystem::v_SteadyStateResidual().
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Expansion dimension.
Definition at line 506 of file EquationSystem.h.
Referenced by Nektar::UnsteadyAdvection::GetFluxVectorDeAlias(), SessionSummary(), Nektar::MMFSWE::SetBoundaryConditions(), Nektar::VelocityCorrectionScheme::SVVVarDiffCoeff(), v_InitObject(), Nektar::ShallowWaterSystem::WallBoundary2D(), Nektar::MMFSWE::WallBoundary2D(), and Nektar::NonlinearPeregrine::WallBoundaryForcing().
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Map to identify relevant solver info to dump in output fields.
Definition at line 533 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::CheckForRestartTime(), EquationSystem(), Nektar::VCSMapping::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), WriteFld(), and Nektar::PulseWaveSystem::WriteVessels().
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Array holding all dependent variables.
Definition at line 467 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::MMFSystem::AbsIntegral(), Nektar::UnsteadyAdvectionDiffusion::AddAdvectionPenaltyFlux(), Nektar::MMFSWE::AddCoriolis(), Nektar::ShallowWaterSystem::AddCoriolis(), Nektar::MMFSWE::AddDivForGradient(), Nektar::MMFSWE::AddElevationEffect(), Nektar::MMFMaxwell::AddGreenDerivCompensate(), Nektar::VCSImplicit::AddImplicitSkewSymAdvection(), Nektar::CFSImplicit::AddMatNSBlkDiagBnd(), Nektar::CFSImplicit::AddMatNSBlkDiagVol(), Nektar::MMFMaxwell::AddPML(), Nektar::MMFSWE::AddRotation(), Nektar::NonlinearSWE::AddVariableDepth(), Nektar::MMFAdvection::AdvectionBellPlane(), Nektar::MMFAdvection::AdvectionBellSphere(), Nektar::SolverUtils::UnsteadySystem::AppendOutput1D(), Nektar::VCSMapping::ApplyIncNSMappingForcing(), Nektar::SolverUtils::MMFSystem::AverageMaxwellFlux1D(), Nektar::SolverUtils::MMFSystem::AvgAbsInt(), Nektar::SolverUtils::MMFSystem::AvgInt(), Nektar::LinearElasticSystem::BuildMatrixSystem(), Nektar::CFSImplicit::CalcRefValues(), Nektar::ShallowWaterSystem::CalcRefValues(), Nektar::CFSImplicit::CalcTraceNumericalFlux(), Nektar::CFSImplicit::CalcVolJacStdMat(), Nektar::SolverUtils::MMFSystem::CartesianToMovingframes(), Nektar::SolverUtils::UnsteadySystem::CheckForRestartTime(), Nektar::SolverUtils::MMFSystem::CheckMovingFrames(), Nektar::MMFMaxwell::Checkpoint_EDFluxOutput(), Nektar::MMFMaxwell::Checkpoint_EnergyOutput(), Nektar::MMFSWE::Checkpoint_Output_Cartesian(), Nektar::MMFMaxwell::Checkpoint_PlotOutput(), Nektar::MMFMaxwell::Checkpoint_TotalFieldOutput(), Nektar::MMFMaxwell::Checkpoint_TotPlotOutput(), Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), Nektar::VCSImplicit::CheckUnsetGlobalLinSys(), Nektar::MMFSWE::Compute_demdt_cdot_ek(), Nektar::SolverUtils::MMFSystem::ComputeCurl(), Nektar::SolverUtils::MMFSystem::Computedemdxicdote(), Nektar::SolverUtils::MMFSystem::ComputeDivCurlMF(), Nektar::MMFSWE::ComputeEnergy(), Nektar::MMFMaxwell::ComputeEnergyDensity(), Nektar::MMFSWE::ComputeEnstrophy(), Nektar::VelocityCorrectionScheme::ComputeGJPNormalVelocity(), Nektar::MMFSWE::ComputeMass(), Nektar::MMFMaxwell::ComputeMaterialMicroWaveCloak(), Nektar::MMFMaxwell::ComputeMaterialOpticalCloak(), Nektar::MMFMaxwell::ComputeMaterialVector(), Nektar::SolverUtils::MMFSystem::ComputeMFtrace(), Nektar::MMFAdvection::ComputeNablaCdotVelocity(), Nektar::MMFSWE::ComputeNablaCdotVelocity(), Nektar::SolverUtils::MMFSystem::ComputencdotMF(), Nektar::MMFMaxwell::ComputeRadCloak(), Nektar::MMFMaxwell::ComputeSurfaceCurrent(), Nektar::MMFAdvection::ComputeveldotMF(), Nektar::MMFSWE::ComputeVorticity(), Nektar::SolverUtils::MMFSystem::ComputeZimYim(), Nektar::MMFSWE::ConservativeToPrimitive(), Nektar::ShallowWaterSystem::ConservativeToPrimitive(), Nektar::CoupledLinearNS::Continuation(), Nektar::LinearSWE::CopyBoundaryTrace(), Nektar::SolverUtils::MMFSystem::CopyBoundaryTrace(), Nektar::AcousticSystem::CopyBoundaryTrace(), CopyFromPhysField(), CopyToPhysField(), Nektar::CoupledLinearNS::DefineForcingTerm(), Nektar::CompressibleFlowSystem::DoAdvection(), Nektar::CFSImplicit::DoAdvectionCoeff(), Nektar::UnsteadyAdvectionDiffusion::DoImplicitSolve(), Nektar::UnsteadyDiffusion::DoImplicitSolve(), Nektar::UnsteadyViscousBurgers::DoImplicitSolve(), Nektar::Bidomain::DoImplicitSolve(), Nektar::BidomainRoth::DoImplicitSolve(), Nektar::Monodomain::DoImplicitSolve(), Nektar::MMFDiffusion::DoImplicitSolve(), Nektar::CFSImplicit::DoImplicitSolve(), Nektar::ShallowWaterSystem::DoImplicitSolve(), Nektar::CFSImplicit::DoOdeImplicitRhs(), Nektar::AcousticSystem::DoOdeProjection(), Nektar::MMFAdvection::DoOdeProjection(), Nektar::UnsteadyAdvection::DoOdeProjection(), Nektar::UnsteadyDiffusion::DoOdeProjection(), Nektar::UnsteadyInviscidBurgers::DoOdeProjection(), Nektar::CompressibleFlowSystem::DoOdeProjection(), Nektar::Dummy::DoOdeProjection(), Nektar::ShallowWaterSystem::DoOdeProjection(), Nektar::AcousticSystem::DoOdeRhs(), Nektar::MMFAdvection::DoOdeRhs(), Nektar::UnsteadyAdvection::DoOdeRhs(), Nektar::UnsteadyAdvectionDiffusion::DoOdeRhs(), Nektar::UnsteadyDiffusion::DoOdeRhs(), Nektar::UnsteadyInviscidBurgers::DoOdeRhs(), Nektar::UnsteadyReactionDiffusion::DoOdeRhs(), Nektar::UnsteadyViscousBurgers::DoOdeRhs(), Nektar::Bidomain::DoOdeRhs(), Nektar::BidomainRoth::DoOdeRhs(), Nektar::CompressibleFlowSystem::DoOdeRhs(), Nektar::MMFDiffusion::DoOdeRhs(), Nektar::ImageWarpingSystem::DoOdeRhs(), Nektar::MMFMaxwell::DoOdeRhs(), Nektar::PulseWavePropagation::DoOdeRhs(), Nektar::MMFSWE::DoOdeRhs(), Nektar::CFSImplicit::DoOdeRhsCoeff(), ErrorExtraPoints(), Nektar::CoupledLinearNS::EvaluateAdvection(), Nektar::IncNavierStokes::EvaluateAdvectionTerms(), Nektar::MMFAdvection::EvaluateAdvectionVelocity(), Nektar::MMFMaxwell::EvaluateCoriolis(), Nektar::MMFSWE::EvaluateCoriolisForZonalFlow(), Nektar::CompressibleFlowSystem::EvaluateIsentropicVortex(), Nektar::CoupledLinearNS::EvaluateNewtonRHS(), Nektar::MMFSWE::EvaluateStandardCoriolis(), Nektar::MMFSWE::EvaluateWaterDepth(), FwdTransFields(), Nektar::MMFMaxwell::GaussianPulse(), Nektar::MMFMaxwell::GenerateSigmaPML(), Nektar::SolverUtils::AdvectionSystem::GetCFLEstimate(), GetCoeff_Offset(), Nektar::SolverUtils::AdvectionSystem::GetElmtCFLVals(), Nektar::CompressibleFlowSystem::GetElmtTimeStep(), Nektar::CompressibleFlowSystem::GetExactRinglebFlow(), GetExpSize(), Nektar::UnsteadyAdvection::GetFluxVector(), Nektar::PulseWavePropagation::GetFluxVector(), Nektar::LinearSWE::GetFluxVector(), Nektar::NonlinearSWE::GetFluxVector(), Nektar::UnsteadyAdvection::GetFluxVectorDeAlias(), Nektar::CompressibleFlowSystem::GetFluxVectorDeAlias(), GetFunction(), Nektar::SolverUtils::MMFSystem::GetIncidentField(), Nektar::UnsteadyAdvectionDiffusion::GetMaxStdVelocity(), Nektar::SolverUtils::MMFSystem::GetMaxwellFlux1D(), Nektar::SolverUtils::MMFSystem::GetMaxwellFlux2D(), GetNcoeffs(), Nektar::UnsteadyAdvection::GetNormalVel(), Nektar::EigenValuesAdvection::GetNormalVelocity(), Nektar::MMFAdvection::GetNormalVelocity(), Nektar::UnsteadyInviscidBurgers::GetNormalVelocity(), Nektar::ImageWarpingSystem::GetNormalVelocity(), GetNpoints(), GetNumExpModesPerExp(), GetPhys_Offset(), Nektar::CompressibleFlowSystem::GetStabilityLimitVector(), Nektar::UnsteadyAdvectionDiffusion::GetSubstepTimeStep(), Nektar::MMFSWE::GetSWEFluxVector(), GetTotPoints(), Nektar::CFSImplicit::GetTraceJac(), GetTraceNpoints(), Nektar::NavierStokesCFE::GetViscosityAndThermalCondFromTemp(), ImportFld(), ImportFldToMultiDomains(), Nektar::CompressibleFlowSystem::InitAdvection(), Nektar::CFSImplicit::InitialiseNonlinSysSolver(), Nektar::ShallowWaterSystem::InitialiseNonlinSysSolver(), Nektar::SolverUtils::UnsteadySystem::InitializeSteadyState(), Nektar::NavierStokesCFE::InitObject_Explicit(), Nektar::MMFSWE::IsolatedMountainFlow(), Nektar::NonlinearPeregrine::LaitoneSolitaryWave(), Nektar::SolverUtils::MMFSystem::LaxFriedrichMaxwellFlux1D(), Nektar::VCSMapping::MappingAccelerationCorrection(), Nektar::VCSMapping::MappingAdvectionCorrection(), Nektar::VCSMapping::MappingPressureCorrection(), Nektar::VelocityCorrectionScheme::MeasureFlowrate(), Nektar::SolverUtils::MMFSystem::MMFInitObject(), Nektar::MMFDiffusion::Morphogenesis(), Nektar::CFSImplicit::MultiplyElmtInvMassPlusSource(), Nektar::ShallowWaterSystem::NonlinSysEvaluator(), Nektar::ShallowWaterSystem::NonlinSysEvaluator1D(), Nektar::CFSImplicit::NonlinSysEvaluatorCoeff(), Nektar::CFSImplicit::NonlinSysEvaluatorCoeff1D(), Nektar::CFSImplicit::NumCalcRiemFluxJac(), Nektar::NonlinearPeregrine::NumericalFluxConsVariables(), Nektar::NonlinearPeregrine::NumericalFluxForcing(), Nektar::SolverUtils::MMFSystem::NumericalMaxwellFluxTE(), Nektar::SolverUtils::MMFSystem::NumericalMaxwellFluxTM(), Nektar::MMFSWE::NumericalSWEFlux(), Nektar::MMFDiffusion::PlanePhiWave(), Nektar::CFSImplicit::PreconCoeff(), Nektar::MMFSWE::PrimitiveToConservative(), Nektar::ShallowWaterSystem::PrimitiveToConservative(), Nektar::MMFMaxwell::Printout_SurfaceCurrent(), Nektar::MMFSWE::RossbyWave(), SessionSummary(), Nektar::MMFSWE::SetBoundaryConditions(), Nektar::AcousticSystem::SetBoundaryConditions(), Nektar::CompressibleFlowSystem::SetBoundaryConditions(), Nektar::ShallowWaterSystem::SetBoundaryConditions(), SetBoundaryConditions(), Nektar::IncNavierStokes::SetBoundaryConditions(), Nektar::NonlinearPeregrine::SetBoundaryConditionsContVariables(), Nektar::NonlinearPeregrine::SetBoundaryConditionsForcing(), Nektar::IncNavierStokes::SetRadiationBoundaryForcing(), Nektar::SmoothedProfileMethod::SetUpCorrectionPressure(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), Nektar::SmoothedProfileMethod::SetUpExpansions(), Nektar::VelocityCorrectionScheme::SetUpExtrapolation(), Nektar::VelocityCorrectionScheme::SetupFlowrate(), Nektar::SolverUtils::MMFSystem::SetUpMovingFrames(), Nektar::VelocityCorrectionScheme::SetUpSVV(), Nektar::IncNavierStokes::SetUpWomersley(), Nektar::IncNavierStokes::SetWomersleyBoundary(), Nektar::IncNavierStokes::SetZeroNormalVelocity(), Nektar::CoupledLinearNS::Solve(), Nektar::CoupledLinearNS::SolveLinearNS(), Nektar::CoupledLinearNS::SolveSteadyNavierStokes(), Nektar::CoupledLinearNS::SolveUnsteadyStokesSystem(), Nektar::NavierStokesCFE::SpecialBndTreat(), Nektar::MMFSWE::SteadyZonalFlow(), Nektar::UnsteadyAdvectionDiffusion::SubStepAdvance(), Nektar::UnsteadyAdvectionDiffusion::SubStepAdvection(), Nektar::SolverUtils::UnsteadySystem::SVVVarDiffCoeff(), Nektar::VelocityCorrectionScheme::SVVVarDiffCoeff(), Nektar::MMFAdvection::Test2Dproblem(), Nektar::MMFAdvection::Test3Dproblem(), Nektar::MMFDiffusion::TestCubeProblem(), Nektar::MMFMaxwell::TestMaxwell1D(), Nektar::MMFMaxwell::TestMaxwell2DPEC(), Nektar::MMFMaxwell::TestMaxwell2DPMC(), Nektar::MMFMaxwell::TestMaxwellSphere(), Nektar::MMFDiffusion::TestPlaneProblem(), Nektar::MMFSWE::TestSWE2Dproblem(), Nektar::MMFSWE::TestVorticityComputation(), Nektar::MMFSWE::UnstableJetFlow(), Nektar::MMFSWE::UnsteadyZonalFlow(), Nektar::AcousticSystem::UpdateBasefieldFwdBwd(), Nektar::SolverUtils::FileSolution::UpdateField(), UpdateFields(), Nektar::SmoothedProfileMethod::UpdateForcing(), UpdatePhysField(), Nektar::SolverUtils::MMFSystem::UpwindMaxwellFlux1D(), Nektar::LEE::v_AddLinTerm(), Nektar::NavierStokesImplicitCFE::v_CalcPhysDeriv(), Nektar::NavierStokesCFE::v_DoDiffusion(), Nektar::NavierStokesImplicitCFE::v_DoDiffusionCoeff(), Nektar::VCSImplicit::v_DoInitialise(), Nektar::SteadyAdvectionDiffusion::v_DoInitialise(), Nektar::PulseWaveSystem::v_DoInitialise(), Nektar::MMFSWE::v_DoInitialise(), Nektar::CoupledLinearNS::v_DoInitialise(), Nektar::VCSMapping::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::LinearSWE::v_DoOdeRhs(), Nektar::NonlinearPeregrine::v_DoOdeRhs(), Nektar::NonlinearSWE::v_DoOdeRhs(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::EigenValuesAdvection::v_DoSolve(), Nektar::Laplace::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::Projection::v_DoSolve(), Nektar::SteadyAdvectionDiffusion::v_DoSolve(), Nektar::IterativeElasticSystem::v_DoSolve(), Nektar::LinearElasticSystem::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), Nektar::VelocityCorrectionScheme::v_EvaluateAdvection_SetPressureBCs(), Nektar::VCSMapping::v_EvaluateAdvection_SetPressureBCs(), v_EvaluateExactSolution(), Nektar::MMFMaxwell::v_EvaluateExactSolution(), Nektar::AcousticSystem::v_ExtraFldOutput(), Nektar::CompressibleFlowSystem::v_ExtraFldOutput(), Nektar::NavierStokesCFE::v_ExtraFldOutput(), Nektar::LinearElasticSystem::v_ExtraFldOutput(), Nektar::Poisson::v_GenerateSummary(), Nektar::Projection::v_GenerateSummary(), Nektar::SolverUtils::MMFSystem::v_GenerateSummary(), Nektar::SolverUtils::FileSolution::v_GetDensity(), Nektar::AcousticSystem::v_GetMaxStdVelocity(), Nektar::CompressibleFlowSystem::v_GetMaxStdVelocity(), Nektar::IncNavierStokes::v_GetMaxStdVelocity(), Nektar::CompressibleFlowSystem::v_GetTimeStep(), Nektar::SolverUtils::FileSolution::v_GetVelocity(), Nektar::NavierStokesCFEAxisym::v_GetViscousFluxVector(), Nektar::NavierStokesCFE::v_GetViscousFluxVectorDeAlias(), v_H1Error(), v_InitObject(), DummyEquationSystem::v_InitObject(), Nektar::PulseWavePropagation::v_InitObject(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::Bidomain::v_InitObject(), Nektar::BidomainRoth::v_InitObject(), Nektar::Monodomain::v_InitObject(), Nektar::MMFDiffusion::v_InitObject(), Nektar::ImageWarpingSystem::v_InitObject(), Nektar::CoupledLinearNS::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), Nektar::VCSMapping::v_InitObject(), Nektar::VelocityCorrectionScheme::v_InitObject(), Nektar::SolverUtils::FileSolution::v_InitObject(), Nektar::AcousticSystem::v_InitObject(), Nektar::APE::v_InitObject(), Nektar::LEE::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::MMFAdvection::v_InitObject(), Nektar::Poisson::v_InitObject(), Nektar::Projection::v_InitObject(), Nektar::UnsteadyAdvection::v_InitObject(), Nektar::UnsteadyAdvectionDiffusion::v_InitObject(), Nektar::UnsteadyDiffusion::v_InitObject(), Nektar::UnsteadyInviscidBurgers::v_InitObject(), Nektar::UnsteadyReactionDiffusion::v_InitObject(), Nektar::UnsteadyViscousBurgers::v_InitObject(), Nektar::CompressibleFlowSystem::v_InitObject(), Nektar::NavierStokesCFEAxisym::v_InitObject(), Nektar::Dummy::v_InitObject(), Nektar::IterativeElasticSystem::v_InitObject(), Nektar::LinearElasticSystem::v_InitObject(), Nektar::MMFMaxwell::v_InitObject(), Nektar::LinearSWE::v_InitObject(), Nektar::MMFSWE::v_InitObject(), Nektar::NonlinearSWE::v_InitObject(), Nektar::ShallowWaterSystem::v_InitObject(), Nektar::MMFSWE::v_L2Error(), v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), Nektar::MMFSWE::v_LinfError(), v_LinfError(), Nektar::PulseWaveSystem::v_LinfError(), Nektar::CoupledLinearNS::v_Output(), Nektar::Dummy::v_PostIntegrate(), Nektar::AcousticSystem::v_PreIntegrate(), Nektar::Dummy::v_PreIntegrate(), Nektar::APE::v_RiemannInvariantBC(), Nektar::LEE::v_RiemannInvariantBC(), Nektar::MMFAdvection::v_SetInitialConditions(), Nektar::MMFMaxwell::v_SetInitialConditions(), Nektar::MMFSWE::v_SetInitialConditions(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::MMFDiffusion::v_SetInitialConditions(), Nektar::VelocityCorrectionScheme::v_SetUpPressureForcing(), Nektar::VCSMapping::v_SetUpPressureForcing(), Nektar::VCSImplicit::v_SetUpPressureForcing(), Nektar::VelocityCorrectionScheme::v_SetUpViscousForcing(), Nektar::VCSMapping::v_SetUpViscousForcing(), Nektar::VCSImplicit::v_SetUpViscousForcing(), Nektar::VCSMapping::v_SolvePressure(), Nektar::VelocityCorrectionScheme::v_SolveUnsteadyStokesSystem(), Nektar::VelocityCorrectionScheme::v_SolveViscous(), Nektar::VCSMapping::v_SolveViscous(), Nektar::VCSImplicit::v_SolveViscous(), Nektar::SolverUtils::UnsteadySystem::v_SteadyStateResidual(), Nektar::CompressibleFlowSystem::v_SteadyStateResidual(), Nektar::CoupledLinearNS::v_TransCoeffToPhys(), Nektar::VelocityCorrectionScheme::v_TransCoeffToPhys(), Nektar::CoupledLinearNS::v_TransPhysToCoeff(), Nektar::VelocityCorrectionScheme::v_TransPhysToCoeff(), Nektar::AcousticSystem::WallBC(), Nektar::ShallowWaterSystem::WallBoundary2D(), Nektar::MMFSWE::WallBoundary2D(), Nektar::NonlinearPeregrine::WallBoundaryContVariables(), Nektar::NonlinearPeregrine::WallBoundaryForcing(), Nektar::NonlinearPeregrine::WCESolve(), Nektar::MMFAdvection::WeakDGDirectionalAdvection(), Nektar::MMFMaxwell::WeakDGMaxwellDirDeriv(), Nektar::MMFSWE::WeakDGSWEDirDeriv(), Nektar::AcousticSystem::WhiteNoiseBC(), WriteFld(), and ZeroPhysFields().
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Finish time of the simulation.
Definition at line 479 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), and Nektar::CFSImplicit::v_UpdateTimeStepCheck().
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Field input/output.
Definition at line 465 of file EquationSystem.h.
Referenced by v_InitObject(), WriteFld(), and Nektar::PulseWaveSystem::WriteVessels().
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Pointer to graph defining mesh.
Definition at line 471 of file EquationSystem.h.
Referenced by Nektar::CFSImplicit::AddMatNSBlkDiagVol(), ErrorExtraPoints(), Nektar::CoupledLinearNS::GenPressureExp(), GetNumExpModes(), Nektar::IterativeElasticSystem::v_DoSolve(), Nektar::LinearElasticSystem::v_DoSolve(), Nektar::NavierStokesImplicitCFE::v_GetFluxDerivJacDirctn(), Nektar::NavierStokesImplicitCFE::v_GetFluxDerivJacDirctnElmt(), v_InitObject(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::ImageWarpingSystem::v_InitObject(), Nektar::CoupledLinearNS::v_InitObject(), Nektar::CompressibleFlowSystem::v_InitObject(), Nektar::LinearElasticSystem::v_InitObject(), Nektar::NavierStokesImplicitCFE::v_MinusDiffusionFluxJacPoint(), and Nektar::IterativeElasticSystem::WriteGeometry().
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Flag to determine if half homogeneous mode is used.
Definition at line 510 of file EquationSystem.h.
Referenced by SessionSummary(), and v_InitObject().
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number of homogenous directions
Definition at line 566 of file EquationSystem.h.
Referenced by v_InitObject().
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Flag to determine if dealiasing is used for homogeneous simulations.
Definition at line 519 of file EquationSystem.h.
Referenced by Nektar::VelocityCorrectionScheme::v_GenerateSummary(), Nektar::VCSImplicit::v_GenerateSummary(), Nektar::VCSWeakPressure::v_GenerateSummary(), v_InitObject(), and Nektar::CoupledLinearNS::v_InitObject().
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Definition at line 556 of file EquationSystem.h.
Referenced by Nektar::CompressibleFlowSystem::DoOdeRhs(), Nektar::CFSImplicit::DoOdeRhsCoeff(), Nektar::SolverUtils::AdvectionSystem::GetCFLEstimate(), Nektar::CFSImplicit::GetTraceJac(), Nektar::VelocityCorrectionScheme::MeasureFlowrate(), SessionSummary(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), Nektar::SmoothedProfileMethod::SetUpExpansions(), Nektar::VelocityCorrectionScheme::SetupFlowrate(), Nektar::VelocityCorrectionScheme::SetUpSVV(), Nektar::CoupledLinearNS::SolveLinearNS(), Nektar::SmoothedProfileMethod::UpdateForcing(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::VelocityCorrectionScheme::v_GenerateSummary(), Nektar::VCSImplicit::v_GenerateSummary(), Nektar::VCSWeakPressure::v_GenerateSummary(), Nektar::IncNavierStokes::v_GetMaxStdVelocity(), v_InitObject(), Nektar::CoupledLinearNS::v_InitObject(), Nektar::SmoothedProfileMethod::v_InitObject(), and Nektar::SolverUtils::AdvectionSystem::v_PostIntegrate().
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Number of time steps between outputting status information.
Definition at line 498 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), GetInfoSteps(), SetInfoSteps(), Nektar::UnsteadyAdvectionDiffusion::SubStepAdvance(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_PrintStatusInformation(), and Nektar::CFSImplicit::v_PrintStatusInformation().
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Number of the step where the simulation should begin.
Definition at line 477 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), SetInitialStep(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), and Nektar::SolverUtils::UnsteadySystem::v_InitObject().
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Number of parallel-in-time time iteration.
Definition at line 500 of file EquationSystem.h.
Referenced by Checkpoint_Output(), SetIterationNumberPIT(), and v_InitObject().
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Lambda constant in real system if one required.
Definition at line 484 of file EquationSystem.h.
Referenced by SetLambda(), and Nektar::CoupledLinearNS::v_DoInitialise().
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Definition at line 487 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), and Nektar::CFSImplicit::v_UpdateTimeStepCheck().
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physical length in X direction (if homogeneous)
Definition at line 558 of file EquationSystem.h.
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physical length in Y direction (if homogeneous)
Definition at line 559 of file EquationSystem.h.
Referenced by SessionSummary(), and v_InitObject().
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physical length in Z direction (if homogeneous)
Definition at line 560 of file EquationSystem.h.
Referenced by SessionSummary(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), v_InitObject(), and Nektar::CoupledLinearNS::v_InitObject().
Moving reference frame status in the inertial frame X, Y, Z, Theta_x, Theta_y, Theta_z, U, V, W, Omega_x, Omega_y, Omega_z, A_x, A_y, A_z, DOmega_x, DOmega_y, DOmega_z, pivot_x, pivot_y, pivot_z.
Definition at line 540 of file EquationSystem.h.
Referenced by Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_EvaluateAdvection_SetPressureBCs(), Nektar::IncNavierStokes::v_GetMovingFrameDisp(), Nektar::IncNavierStokes::v_GetMovingFrameVelocities(), Nektar::IncNavierStokes::v_InitObject(), Nektar::IncNavierStokes::v_SetMovingFrameDisp(), Nektar::IncNavierStokes::v_SetMovingFramePivot(), Nektar::IncNavierStokes::v_SetMovingFrameVelocities(), and WriteFld().
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Flag to determine if use multiple homogenenous modes are used.
Definition at line 512 of file EquationSystem.h.
Referenced by SessionSummary(), and v_InitObject().
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Number of checkpoints written so far.
Definition at line 492 of file EquationSystem.h.
Referenced by GetCheckpointNumber(), SetCheckpointNumber(), Nektar::SolverUtils::FileSolution::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), v_InitObject(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::NonlinearPeregrine::v_SetInitialConditions(), and WriteFld().
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number of points in X direction (if homogeneous)
Definition at line 562 of file EquationSystem.h.
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number of points in Y direction (if homogeneous)
Definition at line 563 of file EquationSystem.h.
Referenced by SessionSummary(), and v_InitObject().
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number of points in Z direction (if homogeneous)
Definition at line 564 of file EquationSystem.h.
Referenced by SessionSummary(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), Nektar::CoupledLinearNS::SolveLinearNS(), v_InitObject(), and Nektar::CoupledLinearNS::v_InitObject().
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Number of Quadrature points used to work out the error.
Definition at line 545 of file EquationSystem.h.
Referenced by ErrorExtraPoints(), v_H1Error(), v_InitObject(), Nektar::MMFSWE::v_L2Error(), v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), v_LinfError(), and Nektar::PulseWaveSystem::v_LinfError().
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Type of projection; e.g continuous or discontinuous.
Definition at line 526 of file EquationSystem.h.
Referenced by Nektar::ShallowWaterSystem::AddCoriolis(), Nektar::NonlinearSWE::AddVariableDepth(), Nektar::UnsteadyAdvectionDiffusion::DoImplicitSolve(), Nektar::UnsteadyViscousBurgers::DoImplicitSolve(), Nektar::MMFAdvection::DoOdeProjection(), Nektar::UnsteadyAdvection::DoOdeProjection(), Nektar::UnsteadyDiffusion::DoOdeProjection(), Nektar::UnsteadyInviscidBurgers::DoOdeProjection(), Nektar::CompressibleFlowSystem::DoOdeProjection(), Nektar::ImageWarpingSystem::DoOdeProjection(), Nektar::MMFSWE::DoOdeProjection(), Nektar::ShallowWaterSystem::DoOdeProjection(), Nektar::MMFAdvection::DoOdeRhs(), Nektar::ImageWarpingSystem::DoOdeRhs(), Nektar::CompressibleFlowSystem::GetStabilityLimit(), Nektar::CompressibleFlowSystem::InitAdvection(), SessionSummary(), Nektar::UnsteadyAdvection::v_ALEInitObject(), Nektar::UnsteadyAdvectionDiffusion::v_ALEInitObject(), Nektar::LinearSWE::v_DoOdeRhs(), Nektar::NonlinearPeregrine::v_DoOdeRhs(), Nektar::NonlinearSWE::v_DoOdeRhs(), Nektar::EigenValuesAdvection::v_DoSolve(), v_InitObject(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::SmoothedProfileMethod::v_InitObject(), Nektar::AcousticSystem::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::UnsteadyAdvection::v_InitObject(), Nektar::UnsteadyAdvectionDiffusion::v_InitObject(), Nektar::UnsteadyDiffusion::v_InitObject(), Nektar::UnsteadyInviscidBurgers::v_InitObject(), Nektar::UnsteadyViscousBurgers::v_InitObject(), Nektar::LinearSWE::v_InitObject(), Nektar::NonlinearPeregrine::v_InitObject(), Nektar::NonlinearSWE::v_InitObject(), and v_SetInitialConditions().
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The session reader.
Definition at line 460 of file EquationSystem.h.
Referenced by Nektar::LinearElasticSystem::BuildMatrixSystem(), Nektar::CFSImplicit::CalcTraceNumericalFlux(), Nektar::SolverUtils::UnsteadySystem::CheckForRestartTime(), Checkpoint_Output(), Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), Nektar::SolverUtils::MMFSystem::CopyBoundaryTrace(), Nektar::IncNavierStokes::DefinedForcing(), Nektar::CoupledLinearNS::DefineForcingTerm(), Nektar::Bidomain::DoImplicitSolve(), Nektar::Bidomain::DoOdeRhs(), Nektar::BidomainRoth::DoOdeRhs(), Nektar::ImageWarpingSystem::DoOdeRhs(), EquationSystem(), ErrorExtraPoints(), Nektar::CompressibleFlowSystem::EvaluateIsentropicVortex(), Nektar::PulseWavePropagation::GetFluxVector(), GetFunction(), Nektar::SmoothedProfileMethod::GetFunctionHdl(), GetNvariables(), GetSession(), Nektar::UnsteadyAdvectionDiffusion::GetSubstepTimeStep(), GetVariable(), Nektar::Helmholtz::Helmholtz(), ImportFld(), ImportFldToMultiDomains(), Nektar::CompressibleFlowSystem::InitAdvection(), Nektar::CFSImplicit::InitialiseNonlinSysSolver(), Nektar::ShallowWaterSystem::InitialiseNonlinSysSolver(), Nektar::CompressibleFlowSystem::InitialiseParameters(), Nektar::SolverUtils::UnsteadySystem::InitializeSteadyState(), Nektar::NavierStokesCFE::InitObject_Explicit(), Nektar::VelocityCorrectionScheme::MeasureFlowrate(), Nektar::SolverUtils::MMFSystem::MMFInitObject(), PrintSummary(), Nektar::SmoothedProfileMethod::ReadPhi(), SessionSummary(), Nektar::AcousticSystem::SetBoundaryConditions(), Nektar::ShallowWaterSystem::SetBoundaryConditions(), SetBoundaryConditions(), Nektar::IncNavierStokes::SetBoundaryConditions(), Nektar::PulseWavePropagation::SetPulseWaveBoundaryConditions(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), Nektar::PulseWaveSystem::SetUpDomainInterfaceBCs(), Nektar::PulseWaveSystem::SetUpDomainInterfaces(), Nektar::VelocityCorrectionScheme::SetUpExtrapolation(), Nektar::VelocityCorrectionScheme::SetupFlowrate(), Nektar::SolverUtils::MMFSystem::SetUpMovingFrames(), Nektar::VelocityCorrectionScheme::SetUpSVV(), Nektar::SmoothedProfileMethod::SolveCorrectedVelocity(), Nektar::UnsteadyAdvectionDiffusion::SubStepAdvance(), Nektar::SolverUtils::FileSolution::UpdateField(), Nektar::VCSImplicit::v_DoInitialise(), Nektar::SteadyAdvectionDiffusion::v_DoInitialise(), Nektar::PulseWaveSystem::v_DoInitialise(), Nektar::CoupledLinearNS::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::IterativeElasticSystem::v_DoSolve(), Nektar::LinearElasticSystem::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), v_EvaluateExactSolution(), Nektar::CompressibleFlowSystem::v_EvaluateExactSolution(), Nektar::AcousticSystem::v_ExtraFldOutput(), Nektar::UnsteadyAdvection::v_ExtraFldOutput(), Nektar::UnsteadyAdvectionDiffusion::v_ExtraFldOutput(), Nektar::CompressibleFlowSystem::v_ExtraFldOutput(), Nektar::NavierStokesCFE::v_ExtraFldOutput(), Nektar::Poisson::v_GenerateSummary(), Nektar::Projection::v_GenerateSummary(), Nektar::UnsteadyAdvection::v_GenerateSummary(), Nektar::CompressibleFlowSystem::v_GenerateSummary(), Nektar::VelocityCorrectionScheme::v_GenerateSummary(), Nektar::VCSImplicit::v_GenerateSummary(), Nektar::VCSWeakPressure::v_GenerateSummary(), Nektar::LinearSWE::v_GenerateSummary(), Nektar::SolverUtils::UnsteadySystem::v_GenerateSummary(), Nektar::Monodomain::v_GenerateSummary(), Nektar::SolverUtils::FileSolution::v_GetDensity(), Nektar::VelocityCorrectionScheme::v_GetForceDimension(), Nektar::CoupledLinearNS::v_GetForceDimension(), v_GetSystemSingularChecks(), Nektar::Helmholtz::v_GetSystemSingularChecks(), Nektar::Laplace::v_GetSystemSingularChecks(), Nektar::Poisson::v_GetSystemSingularChecks(), Nektar::VelocityCorrectionScheme::v_GetSystemSingularChecks(), Nektar::SolverUtils::FileSolution::v_GetVelocity(), v_H1Error(), Nektar::SolverUtils::FileSolution::v_HasConstantDensity(), v_InitObject(), Nektar::PulseWavePropagation::v_InitObject(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::SolverUtils::AdvectionSystem::v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::Bidomain::v_InitObject(), Nektar::BidomainRoth::v_InitObject(), Nektar::Monodomain::v_InitObject(), Nektar::MMFDiffusion::v_InitObject(), Nektar::ImageWarpingSystem::v_InitObject(), Nektar::CoupledLinearNS::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), Nektar::SmoothedProfileMethod::v_InitObject(), Nektar::VCSMapping::v_InitObject(), Nektar::VelocityCorrectionScheme::v_InitObject(), Nektar::SolverUtils::FileSolution::v_InitObject(), Nektar::AcousticSystem::v_InitObject(), Nektar::APE::v_InitObject(), Nektar::LEE::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::MMFAdvection::v_InitObject(), Nektar::Poisson::v_InitObject(), Nektar::Projection::v_InitObject(), Nektar::SteadyAdvectionDiffusion::v_InitObject(), Nektar::SteadyAdvectionDiffusionReaction::v_InitObject(), Nektar::UnsteadyAdvection::v_InitObject(), Nektar::UnsteadyAdvectionDiffusion::v_InitObject(), Nektar::UnsteadyDiffusion::v_InitObject(), Nektar::UnsteadyInviscidBurgers::v_InitObject(), Nektar::UnsteadyReactionDiffusion::v_InitObject(), Nektar::UnsteadyViscousBurgers::v_InitObject(), Nektar::CompressibleFlowSystem::v_InitObject(), Nektar::CFSImplicit::v_InitObject(), Nektar::Dummy::v_InitObject(), Nektar::IterativeElasticSystem::v_InitObject(), Nektar::LinearElasticSystem::v_InitObject(), Nektar::MMFMaxwell::v_InitObject(), Nektar::LinearSWE::v_InitObject(), Nektar::MMFSWE::v_InitObject(), Nektar::NonlinearPeregrine::v_InitObject(), Nektar::NonlinearSWE::v_InitObject(), Nektar::ShallowWaterSystem::v_InitObject(), v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), v_LinfError(), Nektar::PulseWaveSystem::v_LinfError(), Nektar::Dummy::v_Output(), Nektar::Dummy::v_PostIntegrate(), Nektar::AcousticSystem::v_PreIntegrate(), Nektar::Dummy::v_PreIntegrate(), Nektar::SolverUtils::UnsteadySystem::v_PrintStatusInformation(), Nektar::CFSImplicit::v_PrintStatusInformation(), Nektar::SolverUtils::UnsteadySystem::v_PrintSummaryStatistics(), Nektar::CFSImplicit::v_PrintSummaryStatistics(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::VCSMapping::v_SolvePressure(), Nektar::VCSMapping::v_SolveViscous(), WriteFld(), Nektar::IterativeElasticSystem::WriteGeometry(), and Nektar::PulseWaveSystem::WriteVessels().
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Map of known SessionFunctions.
Definition at line 463 of file EquationSystem.h.
Referenced by GetFunction().
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Name of the session.
Definition at line 473 of file EquationSystem.h.
Referenced by Checkpoint_BaseFlow(), Nektar::MMFMaxwell::Checkpoint_EDFluxOutput(), Nektar::MMFMaxwell::Checkpoint_EnergyOutput(), Checkpoint_Output(), Nektar::PulseWaveSystem::CheckPoint_Output(), Nektar::MMFMaxwell::Checkpoint_PlotOutput(), Nektar::MMFMaxwell::Checkpoint_TotalFieldOutput(), Nektar::MMFMaxwell::Checkpoint_TotPlotOutput(), GetSessionName(), ResetSessionName(), SessionSummary(), v_InitObject(), v_Output(), Nektar::CoupledLinearNS::v_Output(), Nektar::PulseWaveSystem::v_Output(), Nektar::SolverUtils::AdvectionSystem::v_PostIntegrate(), Nektar::MMFAdvection::v_SetInitialConditions(), Nektar::MMFMaxwell::v_SetInitialConditions(), Nektar::MMFSWE::v_SetInitialConditions(), v_SetInitialConditions(), Nektar::CompressibleFlowSystem::v_SetInitialConditions(), Nektar::MMFDiffusion::v_SetInitialConditions(), and Nektar::NonlinearPeregrine::v_SetInitialConditions().
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Flag to determine if single homogeneous mode is used.
Definition at line 508 of file EquationSystem.h.
Referenced by SessionSummary(), Nektar::CoupledLinearNS::SetUpCoupledMatrix(), Nektar::CoupledLinearNS::SolveLinearNS(), v_InitObject(), Nektar::CoupledLinearNS::v_InitObject(), and Nektar::CoupledLinearNS::v_Output().
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Spatial dimension (>= expansion dim).
Definition at line 504 of file EquationSystem.h.
Referenced by Nektar::CFSImplicit::AddMatNSBlkDiagBnd(), Nektar::CFSImplicit::AddMatNSBlkDiagVol(), Nektar::NonlinearSWE::AddVariableDepth(), Nektar::CFSImplicit::CalcVolJacStdMat(), Nektar::SolverUtils::MMFSystem::CheckMovingFrames(), Nektar::MMFMaxwell::Checkpoint_EDFluxOutput(), Nektar::MMFMaxwell::Checkpoint_EnergyOutput(), Nektar::MMFSWE::Checkpoint_Output_Cartesian(), Nektar::MMFMaxwell::Checkpoint_PlotOutput(), Nektar::MMFMaxwell::Checkpoint_TotPlotOutput(), Nektar::MMFSWE::Compute_demdt_cdot_ek(), Nektar::SolverUtils::MMFSystem::ComputeCurl(), Nektar::SolverUtils::MMFSystem::Computedemdxicdote(), Nektar::SolverUtils::MMFSystem::ComputeDivCurlMF(), Nektar::MMFSWE::ComputeEnstrophy(), Nektar::SolverUtils::MMFSystem::ComputeMFtrace(), Nektar::MMFAdvection::ComputeNablaCdotVelocity(), Nektar::MMFSWE::ComputeNablaCdotVelocity(), Nektar::SolverUtils::MMFSystem::ComputencdotMF(), Nektar::SolverUtils::MMFSystem::ComputeNtimesF12(), Nektar::SolverUtils::MMFSystem::ComputeNtimesFz(), Nektar::SolverUtils::MMFSystem::ComputeNtimesMF(), Nektar::SolverUtils::MMFSystem::ComputeNtimestimesdFz(), Nektar::MMFAdvection::ComputeveldotMF(), Nektar::SolverUtils::MMFSystem::DeriveCrossProductMF(), Nektar::CompressibleFlowSystem::DoAdvection(), Nektar::CFSImplicit::DoAdvectionCoeff(), Nektar::Bidomain::DoImplicitSolve(), Nektar::AcousticSystem::DoOdeRhs(), Nektar::MMFAdvection::DoOdeRhs(), Nektar::PulseWavePropagation::DoOdeRhs(), Nektar::MMFAdvection::EvaluateAdvectionVelocity(), Nektar::CompressibleFlowSystem::EvaluateIsentropicVortex(), Nektar::LinearSWE::GetFluxVector(), Nektar::NonlinearSWE::GetFluxVector(), Nektar::CompressibleFlowSystem::GetFluxVector(), Nektar::UnsteadyAdvection::GetFluxVectorDeAlias(), Nektar::CompressibleFlowSystem::GetFluxVectorDeAlias(), Nektar::CFSImplicit::GetFluxVectorJacPoint(), Nektar::UnsteadyInviscidBurgers::GetNormalVelocity(), Nektar::CFSImplicit::GetTraceJac(), Nektar::LinearSWE::GetVelocityVector(), Nektar::NonlinearSWE::GetVelocityVector(), Nektar::SolverUtils::MMFSystem::GramSchumitz(), Nektar::CFSImplicit::InitialiseNonlinSysSolver(), Nektar::MMFSWE::IsolatedMountainFlow(), Nektar::VelocityCorrectionScheme::MeasureFlowrate(), Nektar::SolverUtils::MMFSystem::MMFInitObject(), Nektar::CFSImplicit::NumCalcRiemFluxJac(), Nektar::SolverUtils::MMFSystem::NumericalMaxwellFluxTE(), Nektar::SolverUtils::MMFSystem::NumericalMaxwellFluxTM(), Nektar::MMFSWE::RossbyWave(), SessionSummary(), Nektar::VelocityCorrectionScheme::SetupFlowrate(), Nektar::SolverUtils::MMFSystem::SetUpMovingFrames(), Nektar::IncNavierStokes::SetZeroNormalVelocity(), Nektar::MMFSWE::SteadyZonalFlow(), Nektar::MMFMaxwell::TestMaxwellSphere(), Nektar::MMFSWE::TestSWE2Dproblem(), Nektar::MMFSWE::TestVorticityComputation(), Nektar::MMFSWE::UnstableJetFlow(), Nektar::MMFSWE::UnsteadyZonalFlow(), Nektar::LEE::v_AddLinTerm(), Nektar::NavierStokesImplicitCFE::v_CalcPhysDeriv(), Nektar::LinearSWE::v_DoOdeRhs(), Nektar::NonlinearSWE::v_DoOdeRhs(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::SteadyAdvectionDiffusion::v_DoSolve(), Nektar::CompressibleFlowSystem::v_ExtraFldOutput(), Nektar::NavierStokesCFE::v_ExtraFldOutput(), Nektar::NavierStokesImplicitCFE::v_GetDiffusionFluxJacPoint(), Nektar::APE::v_GetFluxVector(), Nektar::LEE::v_GetFluxVector(), Nektar::AcousticSystem::v_GetMaxStdVelocity(), Nektar::CompressibleFlowSystem::v_GetMaxStdVelocity(), Nektar::IncNavierStokes::v_GetVelocity(), Nektar::NavierStokesCFE::v_GetViscousFluxVector(), Nektar::NavierStokesCFEAxisym::v_GetViscousFluxVector(), Nektar::NavierStokesCFE::v_GetViscousFluxVectorDeAlias(), v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::Bidomain::v_InitObject(), Nektar::BidomainRoth::v_InitObject(), Nektar::Monodomain::v_InitObject(), Nektar::MMFDiffusion::v_InitObject(), Nektar::ImageWarpingSystem::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), Nektar::AcousticSystem::v_InitObject(), Nektar::EigenValuesAdvection::v_InitObject(), Nektar::MMFAdvection::v_InitObject(), Nektar::SteadyAdvectionDiffusion::v_InitObject(), Nektar::UnsteadyAdvection::v_InitObject(), Nektar::CompressibleFlowSystem::v_InitObject(), Nektar::NavierStokesImplicitCFE::v_InitObject(), Nektar::MMFMaxwell::v_InitObject(), Nektar::ShallowWaterSystem::v_InitObject(), Nektar::APE::v_RiemannInvariantBC(), Nektar::LEE::v_RiemannInvariantBC(), Nektar::VelocityCorrectionScheme::v_SolveUnsteadyStokesSystem(), Nektar::SolverUtils::MMFSystem::VectorAvgMagnitude(), Nektar::AcousticSystem::WallBC(), and Nektar::AcousticSystem::WhiteNoiseBC().
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Flag to determine if dealisising is usde for the Spectral/hp element discretisation.
Definition at line 524 of file EquationSystem.h.
Referenced by Nektar::CompressibleFlowSystem::InitAdvection(), Nektar::NavierStokesCFE::InitObject_Explicit(), Nektar::VelocityCorrectionScheme::v_GenerateSummary(), Nektar::VCSImplicit::v_GenerateSummary(), Nektar::VCSWeakPressure::v_GenerateSummary(), v_InitObject(), and Nektar::UnsteadyAdvection::v_InitObject().
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Number of steps to take.
Definition at line 494 of file EquationSystem.h.
Referenced by GetSteps(), SetSteps(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), Nektar::SolverUtils::UnsteadySystem::v_GenerateSummary(), v_InitObject(), and Nektar::SolverUtils::UnsteadySystem::v_InitObject().
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variable name in m_movingFrameData
Definition at line 542 of file EquationSystem.h.
Referenced by Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_EvaluateAdvection_SetPressureBCs(), Nektar::IncNavierStokes::v_InitObject(), and WriteFld().
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Current time of simulation.
Definition at line 475 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::CheckSteadyState(), Nektar::AcousticSystem::DoOdeRhs(), ErrorExtraPoints(), Nektar::CoupledLinearNS::EvaluateNewtonRHS(), GetTime(), SetTime(), Nektar::IncNavierStokes::SetWomersleyBoundary(), Nektar::SolverUtils::FileSolution::v_DoInitialise(), Nektar::PulseWaveSystem::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::IterativeElasticSystem::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), v_H1Error(), v_InitObject(), Nektar::PulseWaveSystem::v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), Nektar::APE::v_InitObject(), Nektar::LEE::v_InitObject(), Nektar::MMFSWE::v_L2Error(), v_L2Error(), Nektar::PulseWaveSystem::v_L2Error(), Nektar::MMFSWE::v_LinfError(), v_LinfError(), Nektar::PulseWaveSystem::v_LinfError(), Nektar::Dummy::v_PostIntegrate(), Nektar::VelocityCorrectionScheme::v_PostIntegrate(), Nektar::SolverUtils::FileSolution::v_PostIntegrate(), Nektar::AcousticSystem::v_PreIntegrate(), Nektar::UnsteadyAdvectionDiffusion::v_PreIntegrate(), Nektar::Dummy::v_PreIntegrate(), Nektar::IncNavierStokes::v_PreIntegrate(), Nektar::SolverUtils::UnsteadySystem::v_PrintStatusInformation(), v_SetInitialConditions(), Nektar::VCSImplicit::v_SetUpPressureForcing(), Nektar::VCSImplicit::v_SetUpViscousForcing(), Nektar::CompressibleFlowSystem::v_SteadyStateResidual(), Nektar::CFSImplicit::v_UpdateTimeStepCheck(), Nektar::AcousticSystem::WhiteNoiseBC(), WriteFld(), and Nektar::PulseWaveSystem::WriteVessels().
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Definition at line 489 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), and v_InitObject().
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Time step size.
Definition at line 481 of file EquationSystem.h.
Referenced by Nektar::UnsteadyAdvection::DoOdeProjection(), Nektar::CompressibleFlowSystem::DoOdeRhs(), Nektar::SolverUtils::AdvectionSystem::GetElmtCFLVals(), Nektar::CompressibleFlowSystem::GetElmtTimeStep(), GetTimeStep(), SetTimeStep(), Nektar::UnsteadyAdvectionDiffusion::SubStepAdvance(), Nektar::VCSMapping::v_DoInitialise(), Nektar::VelocityCorrectionScheme::v_DoInitialise(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), Nektar::MMFAdvection::v_DoSolve(), Nektar::MMFMaxwell::v_DoSolve(), Nektar::PulseWaveSystem::v_DoSolve(), Nektar::MMFSWE::v_DoSolve(), Nektar::VelocityCorrectionScheme::v_EvaluateAdvection_SetPressureBCs(), Nektar::VCSMapping::v_EvaluateAdvection_SetPressureBCs(), Nektar::SolverUtils::UnsteadySystem::v_GenerateSummary(), v_InitObject(), Nektar::SolverUtils::UnsteadySystem::v_InitObject(), Nektar::IncNavierStokes::v_InitObject(), Nektar::IncNavierStokes::v_PreIntegrate(), Nektar::SolverUtils::UnsteadySystem::v_PrintStatusInformation(), Nektar::SolverUtils::UnsteadySystem::v_PrintSummaryStatistics(), Nektar::VCSImplicit::v_SetUpPressureForcing(), Nektar::VCSImplicit::v_SetUpViscousForcing(), and Nektar::CFSImplicit::v_UpdateTimeStepCheck().
Array holding trace normals for DG simulations in the forwards direction.
Definition at line 529 of file EquationSystem.h.
Referenced by Nektar::SolverUtils::MMFSystem::AverageMaxwellFlux1D(), Nektar::SolverUtils::MMFSystem::ComputencdotMF(), Nektar::SolverUtils::MMFSystem::ComputeNtimesMF(), Nektar::SolverUtils::MMFSystem::ComputeNtimestimesdFz(), Nektar::UnsteadyAdvection::DoOdeProjection(), Nektar::CompressibleFlowSystem::DoOdeProjection(), Nektar::AcousticSystem::GetNormals(), Nektar::CompressibleFlowSystem::GetNormals(), Nektar::ShallowWaterSystem::GetNormals(), Nektar::UnsteadyAdvection::GetNormalVel(), Nektar::EigenValuesAdvection::GetNormalVelocity(), Nektar::MMFAdvection::GetNormalVelocity(), Nektar::UnsteadyInviscidBurgers::GetNormalVelocity(), Nektar::ImageWarpingSystem::GetNormalVelocity(), GetTraceNormals(), Nektar::SolverUtils::MMFSystem::LaxFriedrichMaxwellFlux1D(), Nektar::SolverUtils::MMFSystem::UpwindMaxwellFlux1D(), Nektar::NonlinearPeregrine::v_DoOdeRhs(), Nektar::SolverUtils::UnsteadySystem::v_DoSolve(), v_InitObject(), Nektar::CompressibleFlowSystem::v_InitObject(), Nektar::APE::v_RiemannInvariantBC(), Nektar::LEE::v_RiemannInvariantBC(), Nektar::AcousticSystem::WallBC(), Nektar::ShallowWaterSystem::WallBoundary2D(), Nektar::NonlinearPeregrine::WallBoundaryForcing(), and Nektar::AcousticSystem::WhiteNoiseBC().
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Flag to determine if FFT is used for homogeneous transform.
Definition at line 514 of file EquationSystem.h.
Referenced by SessionSummary(), v_InitObject(), and Nektar::CoupledLinearNS::v_InitObject().
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Definition at line 458 of file EquationSystem.h.
Referenced by Nektar::CFSImplicit::CalcRefValues(), and v_InitObject().
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Index of windows for parallel-in-time time iteration.
Definition at line 502 of file EquationSystem.h.
Referenced by SetWindowNumberPIT(), v_Output(), and Nektar::CoupledLinearNS::v_Output().
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Definition at line 634 of file EquationSystem.h.