Nektar++
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Nektar::StdRegions::StdHexExp Class Reference

Class representing a hexehedral element in reference space. More...

#include <StdHexExp.h>

Inheritance diagram for Nektar::StdRegions::StdHexExp:
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Public Member Functions

 StdHexExp (const LibUtilities::BasisKey &Ba, const LibUtilities::BasisKey &Bb, const LibUtilities::BasisKey &Bc)
 
 StdHexExp (const StdHexExp &T)=default
 
 ~StdHexExp () override=default
 
- Public Member Functions inherited from Nektar::StdRegions::StdExpansion3D
 StdExpansion3D (int numcoeffs, const LibUtilities::BasisKey &Ba, const LibUtilities::BasisKey &Bb, const LibUtilities::BasisKey &Bc)
 
 StdExpansion3D ()=default
 
 StdExpansion3D (const StdExpansion3D &T)=default
 
 ~StdExpansion3D () override=default
 
void PhysTensorDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray_d1, Array< OneD, NekDouble > &outarray_d2, Array< OneD, NekDouble > &outarray_d3)
 Calculate the 3D derivative in the local tensor/collapsed coordinate at the physical points. More...
 
void BwdTrans_SumFacKernel (const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2)
 
void IProductWRTBase_SumFacKernel (const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2)
 
int GetNedges () const
 return the number of edges in 3D expansion More...
 
int GetEdgeNcoeffs (const int i) const
 This function returns the number of expansion coefficients belonging to the i-th edge. More...
 
void GetEdgeInteriorToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, Orientation traceOrient=eForwards)
 
- Public Member Functions inherited from Nektar::StdRegions::StdExpansion
 StdExpansion ()
 Default Constructor. More...
 
 StdExpansion (const int numcoeffs, const int numbases, const LibUtilities::BasisKey &Ba=LibUtilities::NullBasisKey, const LibUtilities::BasisKey &Bb=LibUtilities::NullBasisKey, const LibUtilities::BasisKey &Bc=LibUtilities::NullBasisKey)
 Constructor. More...
 
 StdExpansion (const StdExpansion &T)
 Copy Constructor. More...
 
virtual ~StdExpansion ()
 Destructor. More...
 
int GetNumBases () const
 This function returns the number of 1D bases used in the expansion. More...
 
const Array< OneD, const LibUtilities::BasisSharedPtr > & GetBase () const
 This function gets the shared point to basis. More...
 
const LibUtilities::BasisSharedPtr & GetBasis (int dir) const
 This function gets the shared point to basis in the dir direction. More...
 
int GetNcoeffs (void) const
 This function returns the total number of coefficients used in the expansion. More...
 
int GetTotPoints () const
 This function returns the total number of quadrature points used in the element. More...
 
LibUtilities::BasisType GetBasisType (const int dir) const
 This function returns the type of basis used in the dir direction. More...
 
int GetBasisNumModes (const int dir) const
 This function returns the number of expansion modes in the dir direction. More...
 
int EvalBasisNumModesMax (void) const
 This function returns the maximum number of expansion modes over all local directions. More...
 
LibUtilities::PointsType GetPointsType (const int dir) const
 This function returns the type of quadrature points used in the dir direction. More...
 
int GetNumPoints (const int dir) const
 This function returns the number of quadrature points in the dir direction. More...
 
const Array< OneD, const NekDouble > & GetPoints (const int dir) const
 This function returns a pointer to the array containing the quadrature points in dir direction. More...
 
int GetNverts () const
 This function returns the number of vertices of the expansion domain. More...
 
int GetTraceNcoeffs (const int i) const
 This function returns the number of expansion coefficients belonging to the i-th trace. More...
 
int GetTraceIntNcoeffs (const int i) const
 
int GetTraceNumPoints (const int i) const
 This function returns the number of quadrature points belonging to the i-th trace. More...
 
const LibUtilities::BasisKey GetTraceBasisKey (const int i, int k=-1) const
 This function returns the basis key belonging to the i-th trace. More...
 
LibUtilities::PointsKey GetTracePointsKey (const int i, int k=-1) const
 This function returns the basis key belonging to the i-th trace. More...
 
int NumBndryCoeffs (void) const
 
int NumDGBndryCoeffs (void) const
 
const LibUtilities::PointsKey GetNodalPointsKey () const
 This function returns the type of expansion Nodal point type if defined. More...
 
int GetNtraces () const
 Returns the number of trace elements connected to this element. More...
 
LibUtilities::ShapeType DetShapeType () const
 This function returns the shape of the expansion domain. More...
 
std::shared_ptr< StdExpansion > GetStdExp () const
 
std::shared_ptr< StdExpansion > GetLinStdExp (void) const
 
int GetShapeDimension () const
 
bool IsBoundaryInteriorExpansion () const
 
bool IsNodalNonTensorialExp ()
 
void BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function performs the Backward transformation from coefficient space to physical space. More...
 
void FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function performs the Forward transformation from physical space to coefficient space. More...
 
void FwdTransBndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
NekDouble Integral (const Array< OneD, const NekDouble > &inarray)
 This function integrates the specified function over the domain. More...
 
void FillMode (const int mode, Array< OneD, NekDouble > &outarray)
 This function fills the array outarray with the mode-th mode of the expansion. More...
 
void IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 this function calculates the inner product of a given function f with the different modes of the expansion More...
 
void IProductWRTBase (const Array< OneD, const NekDouble > &base, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, int coll_check)
 
void IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void IProductWRTDirectionalDerivBase (const Array< OneD, const NekDouble > &direction, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
int GetElmtId ()
 Get the element id of this expansion when used in a list by returning value of m_elmt_id. More...
 
void SetElmtId (const int id)
 Set the element id of this expansion when used in a list by returning value of m_elmt_id. More...
 
void GetCoords (Array< OneD, NekDouble > &coords_1, Array< OneD, NekDouble > &coords_2=NullNekDouble1DArray, Array< OneD, NekDouble > &coords_3=NullNekDouble1DArray)
 this function returns the physical coordinates of the quadrature points of the expansion More...
 
void GetCoord (const Array< OneD, const NekDouble > &Lcoord, Array< OneD, NekDouble > &coord)
 given the coordinates of a point of the element in the local collapsed coordinate system, this function calculates the physical coordinates of the point More...
 
DNekMatSharedPtr GetStdMatrix (const StdMatrixKey &mkey)
 
DNekBlkMatSharedPtr GetStdStaticCondMatrix (const StdMatrixKey &mkey)
 
void NormVectorIProductWRTBase (const Array< OneD, const NekDouble > &Fx, Array< OneD, NekDouble > &outarray)
 
void NormVectorIProductWRTBase (const Array< OneD, const NekDouble > &Fx, const Array< OneD, NekDouble > &Fy, Array< OneD, NekDouble > &outarray)
 
void NormVectorIProductWRTBase (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, const Array< OneD, const NekDouble > &Fz, Array< OneD, NekDouble > &outarray)
 
void NormVectorIProductWRTBase (const Array< OneD, const Array< OneD, NekDouble > > &Fvec, Array< OneD, NekDouble > &outarray)
 
DNekScalBlkMatSharedPtr GetLocStaticCondMatrix (const LocalRegions::MatrixKey &mkey)
 
void DropLocStaticCondMatrix (const LocalRegions::MatrixKey &mkey)
 
int CalcNumberOfCoefficients (const std::vector< unsigned int > &nummodes, int &modes_offset)
 
NekDouble StdPhysEvaluate (const Array< OneD, const NekDouble > &Lcoord, const Array< OneD, const NekDouble > &physvals)
 
int GetCoordim ()
 
void GetBoundaryMap (Array< OneD, unsigned int > &outarray)
 
void GetInteriorMap (Array< OneD, unsigned int > &outarray)
 
int GetVertexMap (const int localVertexId, bool useCoeffPacking=false)
 
void GetTraceToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, Orientation traceOrient=eForwards, int P=-1, int Q=-1)
 
void GetTraceCoeffMap (const unsigned int traceid, Array< OneD, unsigned int > &maparray)
 
void GetElmtTraceToTraceMap (const unsigned int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, Orientation traceOrient=eForwards, int P=-1, int Q=-1)
 
void GetTraceInteriorToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, const Orientation traceOrient=eForwards)
 
void GetTraceNumModes (const int tid, int &numModes0, int &numModes1, const Orientation traceOrient=eDir1FwdDir1_Dir2FwdDir2)
 
void MultiplyByQuadratureMetric (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void MultiplyByStdQuadratureMetric (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
DNekMatSharedPtr CreateGeneralMatrix (const StdMatrixKey &mkey)
 this function generates the mass matrix \(\mathbf{M}[i][j] = \int \phi_i(\mathbf{x}) \phi_j(\mathbf{x}) d\mathbf{x}\) More...
 
void GeneralMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void MassMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LaplacianMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void ReduceOrderCoeffs (int numMin, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void SVVLaplacianFilter (Array< OneD, NekDouble > &array, const StdMatrixKey &mkey)
 
void ExponentialFilter (Array< OneD, NekDouble > &array, const NekDouble alpha, const NekDouble exponent, const NekDouble cutoff)
 
void LaplacianMatrixOp (const int k1, const int k2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void WeakDerivMatrixOp (const int i, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void WeakDirectionalDerivMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void MassLevelCurvatureMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LinearAdvectionMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LinearAdvectionDiffusionReactionMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey, bool addDiffusionTerm=true)
 
void HelmholtzMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
DNekMatSharedPtr GenMatrix (const StdMatrixKey &mkey)
 
void PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray)
 
void PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void PhysDeriv_s (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_ds)
 
void PhysDeriv_n (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_dn)
 
void PhysDirectionalDeriv (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &direction, Array< OneD, NekDouble > &outarray)
 
void StdPhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray)
 
void StdPhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
NekDouble PhysEvaluate (const Array< OneD, const NekDouble > &coords, const Array< OneD, const NekDouble > &physvals)
 This function evaluates the expansion at a single (arbitrary) point of the domain. More...
 
NekDouble PhysEvaluate (const Array< OneD, NekDouble > &coord, const Array< OneD, const NekDouble > &inarray, std::array< NekDouble, 3 > &firstOrderDerivs)
 This function evaluates the first derivative of the expansion at a single (arbitrary) point of the domain. More...
 
NekDouble PhysEvaluate (const Array< OneD, NekDouble > &coord, const Array< OneD, const NekDouble > &inarray, std::array< NekDouble, 3 > &firstOrderDerivs, std::array< NekDouble, 6 > &secondOrderDerivs)
 
NekDouble PhysEvaluate (const Array< OneD, DNekMatSharedPtr > &I, const Array< OneD, const NekDouble > &physvals)
 This function evaluates the expansion at a single (arbitrary) point of the domain. More...
 
NekDouble PhysEvaluateBasis (const Array< OneD, const NekDouble > &coords, int mode)
 This function evaluates the basis function mode mode at a point coords of the domain. More...
 
void LocCoordToLocCollapsed (const Array< OneD, const NekDouble > &xi, Array< OneD, NekDouble > &eta)
 Convert local cartesian coordinate xi into local collapsed coordinates eta. More...
 
void LocCollapsedToLocCoord (const Array< OneD, const NekDouble > &eta, Array< OneD, NekDouble > &xi)
 Convert local collapsed coordinates eta into local cartesian coordinate xi. More...
 
virtual int v_CalcNumberOfCoefficients (const std::vector< unsigned int > &nummodes, int &modes_offset)
 
virtual void v_NormVectorIProductWRTBase (const Array< OneD, const NekDouble > &Fx, Array< OneD, NekDouble > &outarray)
 
virtual void v_NormVectorIProductWRTBase (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray)
 
virtual void v_NormVectorIProductWRTBase (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, const Array< OneD, const NekDouble > &Fz, Array< OneD, NekDouble > &outarray)
 
virtual void v_NormVectorIProductWRTBase (const Array< OneD, const Array< OneD, NekDouble > > &Fvec, Array< OneD, NekDouble > &outarray)
 
virtual DNekScalBlkMatSharedPtr v_GetLocStaticCondMatrix (const LocalRegions::MatrixKey &mkey)
 
virtual void v_DropLocStaticCondMatrix (const LocalRegions::MatrixKey &mkey)
 
NekDouble Linf (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &sol=NullNekDouble1DArray)
 Function to evaluate the discrete \( L_\infty\) error \( |\epsilon|_\infty = \max |u - u_{exact}|\) where \( u_{exact}\) is given by the array sol. More...
 
NekDouble L2 (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &sol=NullNekDouble1DArray)
 Function to evaluate the discrete \( L_2\) error, \( | \epsilon |_{2} = \left [ \int^1_{-1} [u - u_{exact}]^2 dx \right]^{1/2} d\xi_1 \) where \( u_{exact}\) is given by the array sol. More...
 
NekDouble H1 (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &sol=NullNekDouble1DArray)
 Function to evaluate the discrete \( H^1\) error, \( | \epsilon |^1_{2} = \left [ \int^1_{-1} [u - u_{exact}]^2 + \nabla(u - u_{exact})\cdot\nabla(u - u_{exact})\cdot dx \right]^{1/2} d\xi_1 \) where \( u_{exact}\) is given by the array sol. More...
 
const LibUtilities::PointsKeyVector GetPointsKeys () const
 
DNekMatSharedPtr BuildInverseTransformationMatrix (const DNekScalMatSharedPtr &m_transformationmatrix)
 
void PhysInterpToSimplexEquiSpaced (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, int npset=-1)
 This function performs an interpolation from the physical space points provided at input into an array of equispaced points which are not the collapsed coordinate. So for a tetrahedron you will only get a tetrahedral number of values. More...
 
void GetSimplexEquiSpacedConnectivity (Array< OneD, int > &conn, bool standard=true)
 This function provides the connectivity of local simplices (triangles or tets) to connect the equispaced data points provided by PhysInterpToSimplexEquiSpaced. More...
 
void EquiSpacedToCoeffs (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 This function performs a projection/interpolation from the equispaced points sometimes used in post-processing onto the coefficient space. More...
 
template<class T >
std::shared_ptr< T > as ()
 
void IProductWRTBase_SumFac (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool multiplybyweights=true)
 
void GenStdMatBwdDeriv (const int dir, DNekMatSharedPtr &mat)
 

Protected Member Functions

void v_PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) override
 Differentiation Methods. More...
 
void v_PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_StdPhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) override
 
void v_StdPhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_BwdTrans_SumFac (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_BwdTrans_SumFacKernel (const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2) override
 
void v_FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_IProductWRTBase_SumFac (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool multbyweights=true) override
 
void v_IProductWRTBase_SumFacKernel (const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2) override
 
void v_IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_IProductWRTDerivBase_SumFac (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_LocCoordToLocCollapsed (const Array< OneD, const NekDouble > &xi, Array< OneD, NekDouble > &eta) override
 
void v_LocCollapsedToLocCoord (const Array< OneD, const NekDouble > &eta, Array< OneD, NekDouble > &xi) override
 
void v_FillMode (const int mode, Array< OneD, NekDouble > &outarray) override
 
NekDouble v_PhysEvaluateBasis (const Array< OneD, const NekDouble > &coords, int mode) final
 
NekDouble v_PhysEvaluate (const Array< OneD, NekDouble > &coord, const Array< OneD, const NekDouble > &inarray, std::array< NekDouble, 3 > &firstOrderDerivs) override
 
int v_GetNverts () const override
 
int v_GetNedges () const override
 
int v_GetNtraces () const override
 
LibUtilities::ShapeType v_DetShapeType () const override
 
int v_NumBndryCoeffs () const override
 
int v_NumDGBndryCoeffs () const override
 
int v_GetTraceNcoeffs (const int i) const override
 
int v_GetTraceIntNcoeffs (const int i) const override
 
int v_GetTraceNumPoints (const int i) const override
 
LibUtilities::PointsKey v_GetTracePointsKey (const int i, const int j) const override
 
int v_CalcNumberOfCoefficients (const std::vector< unsigned int > &nummodes, int &modes_offset) override
 
const LibUtilities::BasisKey v_GetTraceBasisKey (const int i, const int k) const override
 
bool v_IsBoundaryInteriorExpansion () const override
 
void v_GetCoords (Array< OneD, NekDouble > &coords_x, Array< OneD, NekDouble > &coords_y, Array< OneD, NekDouble > &coords_z) override
 
void v_GetTraceNumModes (const int fid, int &numModes0, int &numModes1, Orientation faceOrient=eDir1FwdDir1_Dir2FwdDir2) override
 
int v_GetEdgeNcoeffs (const int i) const override
 
int v_GetVertexMap (int localVertexId, bool useCoeffPacking=false) override
 
void v_GetInteriorMap (Array< OneD, unsigned int > &outarray) override
 
void v_GetBoundaryMap (Array< OneD, unsigned int > &outarray) override
 
void v_GetTraceCoeffMap (const unsigned int fid, Array< OneD, unsigned int > &maparray) override
 
void v_GetElmtTraceToTraceMap (const unsigned int fid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, Orientation faceOrient, int P, int Q) override
 
void v_GetEdgeInteriorToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, const Orientation traceOrient=eDir1FwdDir1_Dir2FwdDir2) override
 
void v_GetTraceInteriorToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, const Orientation traceOrient=eDir1FwdDir1_Dir2FwdDir2) override
 
DNekMatSharedPtr v_GenMatrix (const StdMatrixKey &mkey) override
 
DNekMatSharedPtr v_CreateStdMatrix (const StdMatrixKey &mkey) override
 
void v_GetSimplexEquiSpacedConnectivity (Array< OneD, int > &conn, bool standard=true) override
 
void v_MassMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey) override
 
void v_LaplacianMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey) override
 
void v_LaplacianMatrixOp (const int k1, const int k2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey) override
 
void v_WeakDerivMatrixOp (const int i, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey) override
 
void v_HelmholtzMatrixOp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey) override
 
void v_MultiplyByStdQuadratureMetric (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) override
 
void v_SVVLaplacianFilter (Array< OneD, NekDouble > &array, const StdMatrixKey &mkey) override
 
void v_ExponentialFilter (Array< OneD, NekDouble > &array, const NekDouble alpha, const NekDouble exponent, const NekDouble cutoff) override
 
- Protected Member Functions inherited from Nektar::StdRegions::StdExpansion3D
NekDouble v_PhysEvaluate (const Array< OneD, const NekDouble > &coords, const Array< OneD, const NekDouble > &physvals) override
 This function evaluates the expansion at a single (arbitrary) point of the domain. More...
 
NekDouble v_PhysEvaluate (const Array< OneD, DNekMatSharedPtr > &I, const Array< OneD, const NekDouble > &physvals) override
 
NekDouble v_PhysEvaluate (const Array< OneD, NekDouble > &coord, const Array< OneD, const NekDouble > &inarray, std::array< NekDouble, 3 > &firstOrderDerivs) override
 
virtual void v_BwdTrans_SumFacKernel (const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2)=0
 
virtual void v_IProductWRTBase_SumFacKernel (const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2)=0
 
void v_LaplacianMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::StdMatrixKey &mkey) override
 
void v_HelmholtzMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::StdMatrixKey &mkey) override
 
NekDouble v_Integral (const Array< OneD, const NekDouble > &inarray) override
 Integrates the specified function over the domain. More...
 
virtual int v_GetNedges (void) const
 
virtual int v_GetEdgeNcoeffs (const int i) const
 
NekDouble BaryTensorDeriv (const Array< OneD, NekDouble > &coord, const Array< OneD, const NekDouble > &inarray, std::array< NekDouble, 3 > &firstOrderDerivs)
 
virtual void v_GetEdgeInteriorToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, Orientation traceOrient=eForwards)
 
void v_GetTraceToElementMap (const int tid, Array< OneD, unsigned int > &maparray, Array< OneD, int > &signarray, Orientation traceOrient, int P, int Q) override
 
void v_GenStdMatBwdDeriv (const int dir, DNekMatSharedPtr &mat) override
 
- Protected Member Functions inherited from Nektar::StdRegions::StdExpansion
DNekMatSharedPtr CreateStdMatrix (const StdMatrixKey &mkey)
 
DNekBlkMatSharedPtr CreateStdStaticCondMatrix (const StdMatrixKey &mkey)
 Create the static condensation of a matrix when using a boundary interior decomposition. More...
 
void BwdTrans_SumFac (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void IProductWRTDerivBase_SumFac (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void IProductWRTDirectionalDerivBase_SumFac (const Array< OneD, const NekDouble > &direction, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
void GeneralMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void MassMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LaplacianMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LaplacianMatrixOp_MatFree_Kernel (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp)
 
void LaplacianMatrixOp_MatFree_GenericImpl (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LaplacianMatrixOp_MatFree (const int k1, const int k2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void WeakDerivMatrixOp_MatFree (const int i, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void WeakDirectionalDerivMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void MassLevelCurvatureMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LinearAdvectionMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void LinearAdvectionDiffusionReactionMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey, bool addDiffusionTerm=true)
 
void HelmholtzMatrixOp_MatFree (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
void HelmholtzMatrixOp_MatFree_GenericImpl (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
 
virtual void v_SetCoeffsToOrientation (StdRegions::Orientation dir, Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
virtual void v_SetCoeffsToOrientation (Array< OneD, NekDouble > &coeffs, StdRegions::Orientation dir)
 
virtual NekDouble v_StdPhysEvaluate (const Array< OneD, const NekDouble > &Lcoord, const Array< OneD, const NekDouble > &physvals)
 
virtual void v_GenStdMatBwdDeriv (const int dir, DNekMatSharedPtr &mat)
 
virtual void v_MultiplyByStdQuadratureMetric (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
 
template<int DIR, bool DERIV = false, bool DERIV2 = false>
NekDouble BaryEvaluate (const NekDouble &coord, const NekDouble *physvals, NekDouble &deriv, NekDouble &deriv2)
 This function performs the barycentric interpolation of the polynomial stored in coord at a point physvals using barycentric interpolation weights in direction. More...
 
template<int DIR>
NekDouble BaryEvaluateBasis (const NekDouble &coord, const int &mode)
 
template<int DIR, bool DERIV = false, bool DERIV2 = false>
NekDouble BaryEvaluate (const NekDouble &coord, const NekDouble *physvals)
 Helper function to pass an unused value by reference into BaryEvaluate. More...
 
template<int DIR, bool DERIV = false, bool DERIV2 = false>
NekDouble BaryEvaluate (const NekDouble &coord, const NekDouble *physvals, NekDouble &deriv)
 

Additional Inherited Members

- Protected Attributes inherited from Nektar::StdRegions::StdExpansion
Array< OneD, LibUtilities::BasisSharedPtr > m_base
 
int m_elmt_id
 
int m_ncoeffs
 
LibUtilities::NekManager< StdMatrixKey, DNekMat, StdMatrixKey::opLess > m_stdMatrixManager
 
LibUtilities::NekManager< StdMatrixKey, DNekBlkMat, StdMatrixKey::opLess > m_stdStaticCondMatrixManager
 

Detailed Description

Class representing a hexehedral element in reference space.

Definition at line 43 of file StdHexExp.h.

Constructor & Destructor Documentation

◆ StdHexExp() [1/2]

Nektar::StdRegions::StdHexExp::StdHexExp ( const LibUtilities::BasisKey &  Ba,
const LibUtilities::BasisKey &  Bb,
const LibUtilities::BasisKey &  Bc 
)

Definition at line 45 of file StdHexExp.cpp.

48 : StdExpansion(Ba.GetNumModes() * Bb.GetNumModes() * Bc.GetNumModes(), 3,
49 Ba, Bb, Bc),
50 StdExpansion3D(Ba.GetNumModes() * Bb.GetNumModes() * Bc.GetNumModes(), Ba,
51 Bb, Bc)
52{
53}
Nektar::StdRegions::StdExpansion::StdExpansion
StdExpansion()
Default Constructor.
Definition: StdExpansion.cpp:42

◆ StdHexExp() [2/2]

Nektar::StdRegions::StdHexExp::StdHexExp ( const StdHexExp &  T)
default

◆ ~StdHexExp()

Nektar::StdRegions::StdHexExp::~StdHexExp ( )
overridedefault

Member Function Documentation

◆ v_BwdTrans()

void Nektar::StdRegions::StdHexExp::v_BwdTrans ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Backward transformation is three dimensional tensorial expansion \( u (\xi_{1i}, \xi_{2j}, \xi_{3k}) = \sum_{p=0}^{Q_x} \psi_p^a (\xi_{1i}) \lbrace { \sum_{q=0}^{Q_y} \psi_{q}^a (\xi_{2j}) \lbrace { \sum_{r=0}^{Q_z} \hat u_{pqr} \psi_{r}^a (\xi_{3k}) \rbrace} \rbrace}. \) And sumfactorizing step of the form is as:\ \( f_{r} (\xi_{3k}) = \sum_{r=0}^{Q_z} \hat u_{pqr} \psi_{r}^a (\xi_{3k}),\\ g_{p} (\xi_{2j}, \xi_{3k}) = \sum_{r=0}^{Q_y} \psi_{p}^a (\xi_{2j}) f_{r} (\xi_{3k}),\\ u(\xi_{1i}, \xi_{2j}, \xi_{3k}) = \sum_{p=0}^{Q_x} \psi_{p}^a (\xi_{1i}) g_{p} (\xi_{2j}, \xi_{3k}). \)

Parameters
inarray?
outarray?

Implements Nektar::StdRegions::StdExpansion.

Definition at line 153 of file StdHexExp.cpp.

155{
156 ASSERTL1((m_base[1]->GetBasisType() != LibUtilities::eOrtho_B) ||
157 (m_base[1]->GetBasisType() != LibUtilities::eModified_B),
158 "Basis[1] is not a general tensor type");
159
160 ASSERTL1((m_base[2]->GetBasisType() != LibUtilities::eOrtho_C) ||
161 (m_base[2]->GetBasisType() != LibUtilities::eModified_C),
162 "Basis[2] is not a general tensor type");
163
164 if (m_base[0]->Collocation() && m_base[1]->Collocation() &&
165 m_base[2]->Collocation())
166 {
167 Vmath::Vcopy(m_base[0]->GetNumPoints() * m_base[1]->GetNumPoints() *
168 m_base[2]->GetNumPoints(),
169 inarray, 1, outarray, 1);
170 }
171 else
172 {
173 StdHexExp::BwdTrans_SumFac(inarray, outarray);
174 }
175}
ASSERTL1
#define ASSERTL1(condition, msg)
Assert Level 1 – Debugging which is used whether in FULLDEBUG or DEBUG compilation mode....
Definition: ErrorUtil.hpp:242
Nektar::StdRegions::StdExpansion::GetBasisType
LibUtilities::BasisType GetBasisType(const int dir) const
This function returns the type of basis used in the dir direction.
Definition: StdExpansion.h:156
Nektar::StdRegions::StdExpansion::BwdTrans_SumFac
void BwdTrans_SumFac(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
Definition: StdExpansion.h:1203
Nektar::StdRegions::StdExpansion::GetNumPoints
int GetNumPoints(const int dir) const
This function returns the number of quadrature points in the dir direction.
Definition: StdExpansion.h:218
Nektar::StdRegions::StdExpansion::m_base
Array< OneD, LibUtilities::BasisSharedPtr > m_base
Definition: StdExpansion.h:1173
Nektar::LibUtilities::eModified_B
@ eModified_B
Principle Modified Functions .
Definition: BasisType.h:49
Nektar::LibUtilities::eModified_C
@ eModified_C
Principle Modified Functions .
Definition: BasisType.h:50
Nektar::LibUtilities::eOrtho_C
@ eOrtho_C
Principle Orthogonal Functions .
Definition: BasisType.h:46
Nektar::LibUtilities::eOrtho_B
@ eOrtho_B
Principle Orthogonal Functions .
Definition: BasisType.h:44
Vmath::Vcopy
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.hpp:825

References ASSERTL1, Nektar::StdRegions::StdExpansion::BwdTrans_SumFac(), Nektar::LibUtilities::eModified_B, Nektar::LibUtilities::eModified_C, Nektar::LibUtilities::eOrtho_B, Nektar::LibUtilities::eOrtho_C, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::GetNumPoints(), Nektar::StdRegions::StdExpansion::m_base, and Vmath::Vcopy().

◆ v_BwdTrans_SumFac()

void Nektar::StdRegions::StdHexExp::v_BwdTrans_SumFac ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 180 of file StdHexExp.cpp.

182{
183 Array<OneD, NekDouble> wsp(
184 m_base[0]->GetNumPoints() * m_base[2]->GetNumModes() *
185 (m_base[1]->GetNumModes() + m_base[1]->GetNumPoints())); // FIX THIS
186
187 BwdTrans_SumFacKernel(m_base[0]->GetBdata(), m_base[1]->GetBdata(),
188 m_base[2]->GetBdata(), inarray, outarray, wsp, true,
189 true, true);
190}
Nektar::StdRegions::StdExpansion3D::BwdTrans_SumFacKernel
void BwdTrans_SumFacKernel(const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2)
Definition: StdExpansion3D.cpp:96

References Nektar::StdRegions::StdExpansion3D::BwdTrans_SumFacKernel(), Nektar::StdRegions::StdExpansion::GetNumPoints(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_BwdTrans_SumFacKernel()

void Nektar::StdRegions::StdHexExp::v_BwdTrans_SumFacKernel ( const Array< OneD, const NekDouble > &  base0,
const Array< OneD, const NekDouble > &  base1,
const Array< OneD, const NekDouble > &  base2,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
Array< OneD, NekDouble > &  wsp,
bool  doCheckCollDir0,
bool  doCheckCollDir1,
bool  doCheckCollDir2 
)
overrideprotectedvirtual
Parameters
base0x-dirn basis matrix
base1y-dirn basis matrix
base2z-dirn basis matrix
inarrayInput vector of modes.
outarrayOutput vector of physical space data.
wspWorkspace of size Q_x*P_z*(P_y+Q_y)
doCheckCollDir0Check for collocation of basis.
doCheckCollDir1Check for collocation of basis.
doCheckCollDir2Check for collocation of basis.
Todo:
Account for some directions being collocated. See StdQuadExp as an example.

Implements Nektar::StdRegions::StdExpansion3D.

Definition at line 205 of file StdHexExp.cpp.

212{
213 int nquad0 = m_base[0]->GetNumPoints();
214 int nquad1 = m_base[1]->GetNumPoints();
215 int nquad2 = m_base[2]->GetNumPoints();
216 int nmodes0 = m_base[0]->GetNumModes();
217 int nmodes1 = m_base[1]->GetNumModes();
218 int nmodes2 = m_base[2]->GetNumModes();
219
220 // Check if using collocation, if requested.
221 bool colldir0 = doCheckCollDir0 ? (m_base[0]->Collocation()) : false;
222 bool colldir1 = doCheckCollDir1 ? (m_base[1]->Collocation()) : false;
223 bool colldir2 = doCheckCollDir2 ? (m_base[2]->Collocation()) : false;
224
225 // If collocation in all directions, Physical values at quadrature
226 // points is just a copy of the modes.
227 if (colldir0 && colldir1 && colldir2)
228 {
229 Vmath::Vcopy(m_ncoeffs, inarray.get(), 1, outarray.get(), 1);
230 }
231 else
232 {
233 // Check sufficiently large workspace.
234 ASSERTL1(wsp.size() >= nquad0 * nmodes2 * (nmodes1 + nquad1),
235 "Workspace size is not sufficient");
236
237 // Assign second half of workspace for 2nd DGEMM operation.
238 Array<OneD, NekDouble> wsp2 = wsp + nquad0 * nmodes1 * nmodes2;
239
240 // BwdTrans in each direction using DGEMM
241 Blas::Dgemm('T', 'T', nmodes1 * nmodes2, nquad0, nmodes0, 1.0,
242 &inarray[0], nmodes0, base0.get(), nquad0, 0.0, &wsp[0],
243 nmodes1 * nmodes2);
244 Blas::Dgemm('T', 'T', nquad0 * nmodes2, nquad1, nmodes1, 1.0, &wsp[0],
245 nmodes1, base1.get(), nquad1, 0.0, &wsp2[0],
246 nquad0 * nmodes2);
247 Blas::Dgemm('T', 'T', nquad0 * nquad1, nquad2, nmodes2, 1.0, &wsp2[0],
248 nmodes2, base2.get(), nquad2, 0.0, &outarray[0],
249 nquad0 * nquad1);
250 }
251}
Blas::Dgemm
static void Dgemm(const char &transa, const char &transb, const int &m, const int &n, const int &k, const double &alpha, const double *a, const int &lda, const double *b, const int &ldb, const double &beta, double *c, const int &ldc)
BLAS level 3: Matrix-matrix multiply C = A x B where op(A)[m x k], op(B)[k x n], C[m x n] DGEMM perfo...
Definition: Blas.hpp:383

References ASSERTL1, Blas::Dgemm(), Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::m_ncoeffs, and Vmath::Vcopy().

◆ v_CalcNumberOfCoefficients()

int Nektar::StdRegions::StdHexExp::v_CalcNumberOfCoefficients ( const std::vector< unsigned int > &  nummodes,
int &  modes_offset 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 721 of file StdHexExp.cpp.

723{
724 int nmodes = nummodes[modes_offset] * nummodes[modes_offset + 1] *
725 nummodes[modes_offset + 2];
726 modes_offset += 3;
727
728 return nmodes;
729}

◆ v_CreateStdMatrix()

DNekMatSharedPtr Nektar::StdRegions::StdHexExp::v_CreateStdMatrix ( const StdMatrixKey &  mkey)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2265 of file StdHexExp.cpp.

2266{
2267 return v_GenMatrix(mkey);
2268}
Nektar::StdRegions::StdHexExp::v_GenMatrix
DNekMatSharedPtr v_GenMatrix(const StdMatrixKey &mkey) override
Definition: StdHexExp.cpp:2177

References v_GenMatrix().

◆ v_DetShapeType()

LibUtilities::ShapeType Nektar::StdRegions::StdHexExp::v_DetShapeType ( ) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 605 of file StdHexExp.cpp.

606{
607 return LibUtilities::eHexahedron;
608}

References Nektar::LibUtilities::eHexahedron.

◆ v_ExponentialFilter()

void Nektar::StdRegions::StdHexExp::v_ExponentialFilter ( Array< OneD, NekDouble > &  array,
const NekDouble  alpha,
const NekDouble  exponent,
const NekDouble  cutoff 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 2468 of file StdHexExp.cpp.

2472{
2473 // Generate an orthogonal expansion
2474 int qa = m_base[0]->GetNumPoints();
2475 int qb = m_base[1]->GetNumPoints();
2476 int qc = m_base[2]->GetNumPoints();
2477 int nmodesA = m_base[0]->GetNumModes();
2478 int nmodesB = m_base[1]->GetNumModes();
2479 int nmodesC = m_base[2]->GetNumModes();
2480 int P = nmodesA - 1;
2481 int Q = nmodesB - 1;
2482 int R = nmodesC - 1;
2483
2484 // Declare orthogonal basis.
2485 LibUtilities::PointsKey pa(qa, m_base[0]->GetPointsType());
2486 LibUtilities::PointsKey pb(qb, m_base[1]->GetPointsType());
2487 LibUtilities::PointsKey pc(qc, m_base[2]->GetPointsType());
2488
2489 LibUtilities::BasisKey Ba(LibUtilities::eOrtho_A, nmodesA, pa);
2490 LibUtilities::BasisKey Bb(LibUtilities::eOrtho_A, nmodesB, pb);
2491 LibUtilities::BasisKey Bc(LibUtilities::eOrtho_A, nmodesC, pc);
2492 StdHexExp OrthoExp(Ba, Bb, Bc);
2493
2494 // Cutoff
2495 int Pcut = cutoff * P;
2496 int Qcut = cutoff * Q;
2497 int Rcut = cutoff * R;
2498
2499 // Project onto orthogonal space.
2500 Array<OneD, NekDouble> orthocoeffs(OrthoExp.GetNcoeffs());
2501 OrthoExp.FwdTrans(array, orthocoeffs);
2502
2503 //
2504 NekDouble fac, fac1, fac2, fac3;
2505 int index = 0;
2506 for (int i = 0; i < nmodesA; ++i)
2507 {
2508 for (int j = 0; j < nmodesB; ++j)
2509 {
2510 for (int k = 0; k < nmodesC; ++k, ++index)
2511 {
2512 // to filter out only the "high-modes"
2513 if (i > Pcut || j > Qcut || k > Rcut)
2514 {
2515 fac1 = (NekDouble)(i - Pcut) / ((NekDouble)(P - Pcut));
2516 fac2 = (NekDouble)(j - Qcut) / ((NekDouble)(Q - Qcut));
2517 fac3 = (NekDouble)(k - Rcut) / ((NekDouble)(R - Rcut));
2518 fac = max(max(fac1, fac2), fac3);
2519 fac = pow(fac, exponent);
2520 orthocoeffs[index] *= exp(-alpha * fac);
2521 }
2522 }
2523 }
2524 }
2525
2526 // backward transform to physical space
2527 OrthoExp.BwdTrans(orthocoeffs, array);
2528}
Nektar::StdRegions::StdExpansion::GetPointsType
LibUtilities::PointsType GetPointsType(const int dir) const
This function returns the type of quadrature points used in the dir direction.
Definition: StdExpansion.h:205
Nektar::StdRegions::StdHexExp::StdHexExp
StdHexExp(const LibUtilities::BasisKey &Ba, const LibUtilities::BasisKey &Bb, const LibUtilities::BasisKey &Bc)
Definition: StdHexExp.cpp:45
Nektar::LibUtilities::P
@ P
Monomial polynomials .
Definition: BasisType.h:62
Nektar::LibUtilities::eOrtho_A
@ eOrtho_A
Principle Orthogonal Functions .
Definition: BasisType.h:42
Nektar::NekDouble
double NekDouble
Definition: NektarUnivTypeDefs.hpp:43

References Nektar::StdRegions::StdExpansion::BwdTrans(), Nektar::LibUtilities::eOrtho_A, Nektar::StdRegions::StdExpansion::FwdTrans(), Nektar::StdRegions::StdExpansion::GetNcoeffs(), Nektar::StdRegions::StdExpansion::GetPointsType(), Nektar::StdRegions::StdExpansion::m_base, and Nektar::LibUtilities::P.

◆ v_FillMode()

void Nektar::StdRegions::StdHexExp::v_FillMode ( const int  mode,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual
Note
for hexahedral expansions _base[0] (i.e. p) modes run fastest.

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 524 of file StdHexExp.cpp.

525{
526 int nquad0 = m_base[0]->GetNumPoints();
527 int nquad1 = m_base[1]->GetNumPoints();
528 int nquad2 = m_base[2]->GetNumPoints();
529
530 Array<OneD, const NekDouble> base0 = m_base[0]->GetBdata();
531 Array<OneD, const NekDouble> base1 = m_base[1]->GetBdata();
532 Array<OneD, const NekDouble> base2 = m_base[2]->GetBdata();
533
534 int btmp0 = m_base[0]->GetNumModes();
535 int btmp1 = m_base[1]->GetNumModes();
536 int mode2 = mode / (btmp0 * btmp1);
537 int mode1 = (mode - mode2 * btmp0 * btmp1) / btmp0;
538 int mode0 = (mode - mode2 * btmp0 * btmp1) % btmp0;
539
540 ASSERTL2(mode == mode2 * btmp0 * btmp1 + mode1 * btmp0 + mode0,
541 "Mode lookup failed.");
542 ASSERTL2(mode < m_ncoeffs,
543 "Calling argument mode is larger than total expansion "
544 "order");
545
546 for (int i = 0; i < nquad1 * nquad2; ++i)
547 {
548 Vmath::Vcopy(nquad0, (NekDouble *)(base0.get() + mode0 * nquad0), 1,
549 &outarray[0] + i * nquad0, 1);
550 }
551
552 for (int j = 0; j < nquad2; ++j)
553 {
554 for (int i = 0; i < nquad0; ++i)
555 {
556 Vmath::Vmul(nquad1, (NekDouble *)(base1.get() + mode1 * nquad1), 1,
557 &outarray[0] + i + j * nquad0 * nquad1, nquad0,
558 &outarray[0] + i + j * nquad0 * nquad1, nquad0);
559 }
560 }
561
562 for (int i = 0; i < nquad2; i++)
563 {
564 Blas::Dscal(nquad0 * nquad1, base2[mode2 * nquad2 + i],
565 &outarray[0] + i * nquad0 * nquad1, 1);
566 }
567}
ASSERTL2
#define ASSERTL2(condition, msg)
Assert Level 2 – Debugging which is used FULLDEBUG compilation mode. This level assert is designed to...
Definition: ErrorUtil.hpp:265
Blas::Dscal
static void Dscal(const int &n, const double &alpha, double *x, const int &incx)
BLAS level 1: x = alpha x.
Definition: Blas.hpp:149
Vmath::Vmul
void Vmul(int n, const T *x, const int incx, const T *y, const int incy, T *z, const int incz)
Multiply vector z = x*y.
Definition: Vmath.hpp:72

References ASSERTL2, Blas::Dscal(), Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::m_ncoeffs, Vmath::Vcopy(), and Vmath::Vmul().

◆ v_FwdTrans()

void Nektar::StdRegions::StdHexExp::v_FwdTrans ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Solves the system \( \mathbf{B^{\top}WB\hat{u}}=\mathbf{B^{\top}Wu^{\delta}} \)

Parameters
inarrayarray of physical quadrature points to be transformed, \( \mathbf{u^{\delta}} \).
outarrayarray of expansion coefficients, \( \mathbf{\hat{u}} \).

Implements Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 262 of file StdHexExp.cpp.

264{
265 // If using collocation expansion, coefficients match physical
266 // data points so just do a direct copy.
267 if ((m_base[0]->Collocation()) && (m_base[1]->Collocation()) &&
268 (m_base[2]->Collocation()))
269 {
270 Vmath::Vcopy(GetNcoeffs(), &inarray[0], 1, &outarray[0], 1);
271 }
272 else
273 {
274 // Compute B^TWu
275 IProductWRTBase(inarray, outarray);
276
277 // get Mass matrix inverse
278 StdMatrixKey masskey(eInvMass, DetShapeType(), *this);
279 DNekMatSharedPtr matsys = GetStdMatrix(masskey);
280
281 // copy inarray in case inarray == outarray
282 DNekVec in(m_ncoeffs, outarray);
283 DNekVec out(m_ncoeffs, outarray, eWrapper);
284
285 // Solve for coefficients.
286 out = (*matsys) * in;
287 }
288}
Nektar::StdRegions::StdExpansion::GetNcoeffs
int GetNcoeffs(void) const
This function returns the total number of coefficients used in the expansion.
Definition: StdExpansion.h:124
Nektar::StdRegions::StdExpansion::GetStdMatrix
DNekMatSharedPtr GetStdMatrix(const StdMatrixKey &mkey)
Definition: StdExpansion.h:603
Nektar::StdRegions::StdExpansion::IProductWRTBase
void IProductWRTBase(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
this function calculates the inner product of a given function f with the different modes of the expa...
Definition: StdExpansion.h:528
Nektar::StdRegions::StdExpansion::DetShapeType
LibUtilities::ShapeType DetShapeType() const
This function returns the shape of the expansion domain.
Definition: StdExpansion.h:367
Nektar::DNekVec
NekVector< NekDouble > DNekVec
Definition: NekTypeDefs.hpp:48
Nektar::DNekMatSharedPtr
std::shared_ptr< DNekMat > DNekMatSharedPtr
Definition: NekTypeDefs.hpp:75

References Nektar::StdRegions::StdExpansion::DetShapeType(), Nektar::StdRegions::eInvMass, Nektar::eWrapper, Nektar::StdRegions::StdExpansion::GetNcoeffs(), Nektar::StdRegions::StdExpansion::GetStdMatrix(), Nektar::StdRegions::StdExpansion::IProductWRTBase(), Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::m_ncoeffs, and Vmath::Vcopy().

◆ v_GenMatrix()

DNekMatSharedPtr Nektar::StdRegions::StdHexExp::v_GenMatrix ( const StdMatrixKey &  mkey)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2177 of file StdHexExp.cpp.

2178{
2179
2180 MatrixType mtype = mkey.GetMatrixType();
2181
2182 DNekMatSharedPtr Mat;
2183
2184 switch (mtype)
2185 {
2186 case ePhysInterpToEquiSpaced:
2187 {
2188 int nq0 = m_base[0]->GetNumPoints();
2189 int nq1 = m_base[1]->GetNumPoints();
2190 int nq2 = m_base[2]->GetNumPoints();
2191 int nq;
2192
2193 // take definition from key
2194 if (mkey.ConstFactorExists(eFactorConst))
2195 {
2196 nq = (int)mkey.GetConstFactor(eFactorConst);
2197 }
2198 else
2199 {
2200 nq = max(nq0, max(nq1, nq2));
2201 }
2202
2203 int neq =
2204 LibUtilities::StdHexData::getNumberOfCoefficients(nq, nq, nq);
2205 Array<OneD, Array<OneD, NekDouble>> coords(neq);
2206 Array<OneD, NekDouble> coll(3);
2207 Array<OneD, DNekMatSharedPtr> I(3);
2208 Array<OneD, NekDouble> tmp(nq0);
2209
2210 Mat =
2211 MemoryManager<DNekMat>::AllocateSharedPtr(neq, nq0 * nq1 * nq2);
2212 int cnt = 0;
2213
2214 for (int i = 0; i < nq; ++i)
2215 {
2216 for (int j = 0; j < nq; ++j)
2217 {
2218 for (int k = 0; k < nq; ++k, ++cnt)
2219 {
2220 coords[cnt] = Array<OneD, NekDouble>(3);
2221 coords[cnt][0] = -1.0 + 2 * k / (NekDouble)(nq - 1);
2222 coords[cnt][1] = -1.0 + 2 * j / (NekDouble)(nq - 1);
2223 coords[cnt][2] = -1.0 + 2 * i / (NekDouble)(nq - 1);
2224 }
2225 }
2226 }
2227
2228 for (int i = 0; i < neq; ++i)
2229 {
2230 LocCoordToLocCollapsed(coords[i], coll);
2231
2232 I[0] = m_base[0]->GetI(coll);
2233 I[1] = m_base[1]->GetI(coll + 1);
2234 I[2] = m_base[2]->GetI(coll + 2);
2235
2236 // interpolate first coordinate direction
2237 NekDouble fac;
2238 for (int k = 0; k < nq2; ++k)
2239 {
2240 for (int j = 0; j < nq1; ++j)
2241 {
2242
2243 fac = (I[1]->GetPtr())[j] * (I[2]->GetPtr())[k];
2244 Vmath::Smul(nq0, fac, I[0]->GetPtr(), 1, tmp, 1);
2245
2246 Vmath::Vcopy(nq0, &tmp[0], 1,
2247 Mat->GetRawPtr() + k * nq0 * nq1 * neq +
2248 j * nq0 * neq + i,
2249 neq);
2250 }
2251 }
2252 }
2253 }
2254 break;
2255 default:
2256 {
2257 Mat = StdExpansion::CreateGeneralMatrix(mkey);
2258 }
2259 break;
2260 }
2261
2262 return Mat;
2263}
Nektar::MemoryManager::AllocateSharedPtr
static std::shared_ptr< DataType > AllocateSharedPtr(const Args &...args)
Allocate a shared pointer from the memory pool.
Definition: NekMemoryManager.hpp:166
Nektar::StdRegions::StdExpansion::LocCoordToLocCollapsed
void LocCoordToLocCollapsed(const Array< OneD, const NekDouble > &xi, Array< OneD, NekDouble > &eta)
Convert local cartesian coordinate xi into local collapsed coordinates eta.
Definition: StdExpansion.h:1002
Nektar::StdRegions::StdExpansion::CreateGeneralMatrix
DNekMatSharedPtr CreateGeneralMatrix(const StdMatrixKey &mkey)
this function generates the mass matrix
Definition: StdExpansion.cpp:243
Nektar::LibUtilities::StdHexData::getNumberOfCoefficients
int getNumberOfCoefficients(int Na, int Nb, int Nc)
Definition: ShapeType.hpp:153
Vmath::Smul
void Smul(int n, const T alpha, const T *x, const int incx, T *y, const int incy)
Scalar multiply y = alpha*x.
Definition: Vmath.hpp:100

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::StdRegions::StdMatrixKey::ConstFactorExists(), Nektar::StdRegions::StdExpansion::CreateGeneralMatrix(), Nektar::StdRegions::eFactorConst, Nektar::StdRegions::ePhysInterpToEquiSpaced, Nektar::StdRegions::StdMatrixKey::GetConstFactor(), Nektar::StdRegions::StdMatrixKey::GetMatrixType(), Nektar::LibUtilities::StdHexData::getNumberOfCoefficients(), Nektar::StdRegions::StdExpansion::LocCoordToLocCollapsed(), Nektar::StdRegions::StdExpansion::m_base, Vmath::Smul(), and Vmath::Vcopy().

Referenced by v_CreateStdMatrix().

◆ v_GetBoundaryMap()

void Nektar::StdRegions::StdHexExp::v_GetBoundaryMap ( Array< OneD, unsigned int > &  outarray)
overrideprotectedvirtual
Parameters
outarrayStorage for computed map.

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 1024 of file StdHexExp.cpp.

1025{
1026 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
1027 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
1028 "BasisType is not a boundary interior form");
1029 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
1030 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
1031 "BasisType is not a boundary interior form");
1032 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
1033 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
1034 "BasisType is not a boundary interior form");
1035
1036 int i;
1037 int nummodes[3] = {m_base[0]->GetNumModes(), m_base[1]->GetNumModes(),
1038 m_base[2]->GetNumModes()};
1039
1040 int nBndCoeffs = NumBndryCoeffs();
1041
1042 if (outarray.size() != nBndCoeffs)
1043 {
1044 outarray = Array<OneD, unsigned int>(nBndCoeffs);
1045 }
1046
1047 const LibUtilities::BasisType Btype[3] = {GetBasisType(0), GetBasisType(1),
1048 GetBasisType(2)};
1049
1050 int p, q, r;
1051 int cnt = 0;
1052
1053 int BndIdx[3][2];
1054 int IntIdx[3][2];
1055
1056 for (i = 0; i < 3; i++)
1057 {
1058 BndIdx[i][0] = 0;
1059
1060 if (Btype[i] == LibUtilities::eModified_A)
1061 {
1062 BndIdx[i][1] = 1;
1063 IntIdx[i][0] = 2;
1064 IntIdx[i][1] = nummodes[i];
1065 }
1066 else
1067 {
1068 BndIdx[i][1] = nummodes[i] - 1;
1069 IntIdx[i][0] = 1;
1070 IntIdx[i][1] = nummodes[i] - 1;
1071 }
1072 }
1073
1074 for (i = 0; i < 2; i++)
1075 {
1076 r = BndIdx[2][i];
1077 for (q = 0; q < nummodes[1]; q++)
1078 {
1079 for (p = 0; p < nummodes[0]; p++)
1080 {
1081 outarray[cnt++] =
1082 r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
1083 }
1084 }
1085 }
1086
1087 for (r = IntIdx[2][0]; r < IntIdx[2][1]; r++)
1088 {
1089 for (i = 0; i < 2; i++)
1090 {
1091 q = BndIdx[1][i];
1092 for (p = 0; p < nummodes[0]; p++)
1093 {
1094 outarray[cnt++] =
1095 r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
1096 }
1097 }
1098
1099 for (q = IntIdx[1][0]; q < IntIdx[1][1]; q++)
1100 {
1101 for (i = 0; i < 2; i++)
1102 {
1103 p = BndIdx[0][i];
1104 outarray[cnt++] =
1105 r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
1106 }
1107 }
1108 }
1109
1110 sort(outarray.get(), outarray.get() + nBndCoeffs);
1111}
CellMLToNektar.cellml_metadata.p
p
Definition: cellml_metadata.py:350
Nektar::LibUtilities::eGLL_Lagrange
@ eGLL_Lagrange
Lagrange for SEM basis .
Definition: BasisType.h:56
Nektar::LibUtilities::eModified_A
@ eModified_A
Principle Modified Functions .
Definition: BasisType.h:48
Nektar::UnitTests::q
std::vector< double > q(NPUPPER *NPUPPER)

References ASSERTL1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::NumBndryCoeffs(), CellMLToNektar.cellml_metadata::p, and Nektar::UnitTests::q().

◆ v_GetCoords()

void Nektar::StdRegions::StdHexExp::v_GetCoords ( Array< OneD, NekDouble > &  coords_x,
Array< OneD, NekDouble > &  coords_y,
Array< OneD, NekDouble > &  coords_z 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 759 of file StdHexExp.cpp.

762{
763 Array<OneD, const NekDouble> eta_x = m_base[0]->GetZ();
764 Array<OneD, const NekDouble> eta_y = m_base[1]->GetZ();
765 Array<OneD, const NekDouble> eta_z = m_base[2]->GetZ();
766 int Qx = GetNumPoints(0);
767 int Qy = GetNumPoints(1);
768 int Qz = GetNumPoints(2);
769
770 // Convert collapsed coordinates into cartesian coordinates:
771 // eta --> xi
772 for (int k = 0; k < Qz; ++k)
773 {
774 for (int j = 0; j < Qy; ++j)
775 {
776 for (int i = 0; i < Qx; ++i)
777 {
778 int s = i + Qx * (j + Qy * k);
779 xi_x[s] = eta_x[i];
780 xi_y[s] = eta_y[j];
781 xi_z[s] = eta_z[k];
782 }
783 }
784 }
785}

References Nektar::StdRegions::StdExpansion::GetNumPoints(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetEdgeInteriorToElementMap()

void Nektar::StdRegions::StdHexExp::v_GetEdgeInteriorToElementMap ( const int  eid,
Array< OneD, unsigned int > &  maparray,
Array< OneD, int > &  signarray,
const Orientation  edgeOrient = eDir1FwdDir1_Dir2FwdDir2 
)
overrideprotectedvirtual
Parameters
eidThe edge to compute the numbering for.
edgeOrientOrientation of the edge.
maparrayStorage for computed mapping array.
signarray?

Reimplemented from Nektar::StdRegions::StdExpansion3D.

Definition at line 1542 of file StdHexExp.cpp.

1545{
1546 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
1547 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
1548 "BasisType is not a boundary interior form");
1549 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
1550 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
1551 "BasisType is not a boundary interior form");
1552 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
1553 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
1554 "BasisType is not a boundary interior form");
1555
1556 ASSERTL1((eid >= 0) && (eid < 12),
1557 "local edge id must be between 0 and 11");
1558
1559 int nEdgeIntCoeffs = GetEdgeNcoeffs(eid) - 2;
1560
1561 if (maparray.size() != nEdgeIntCoeffs)
1562 {
1563 maparray = Array<OneD, unsigned int>(nEdgeIntCoeffs);
1564 }
1565
1566 if (signarray.size() != nEdgeIntCoeffs)
1567 {
1568 signarray = Array<OneD, int>(nEdgeIntCoeffs, 1);
1569 }
1570 else
1571 {
1572 fill(signarray.get(), signarray.get() + nEdgeIntCoeffs, 1);
1573 }
1574
1575 int nummodes[3] = {m_base[0]->GetNumModes(), m_base[1]->GetNumModes(),
1576 m_base[2]->GetNumModes()};
1577
1578 const LibUtilities::BasisType bType[3] = {GetBasisType(0), GetBasisType(1),
1579 GetBasisType(2)};
1580
1581 bool reverseOrdering = false;
1582 bool signChange = false;
1583
1584 int IdxRange[3][2] = {{0, 0}, {0, 0}, {0, 0}};
1585
1586 switch (eid)
1587 {
1588 case 0:
1589 case 1:
1590 case 2:
1591 case 3:
1592 {
1593 IdxRange[2][0] = 0;
1594 IdxRange[2][1] = 1;
1595 }
1596 break;
1597 case 8:
1598 case 9:
1599 case 10:
1600 case 11:
1601 {
1602 if (bType[2] == LibUtilities::eGLL_Lagrange)
1603 {
1604 IdxRange[2][0] = nummodes[2] - 1;
1605 IdxRange[2][1] = nummodes[2];
1606 }
1607 else
1608 {
1609 IdxRange[2][0] = 1;
1610 IdxRange[2][1] = 2;
1611 }
1612 }
1613 break;
1614 case 4:
1615 case 5:
1616 case 6:
1617 case 7:
1618 {
1619 if (bType[2] == LibUtilities::eGLL_Lagrange)
1620 {
1621 IdxRange[2][0] = 1;
1622 IdxRange[2][1] = nummodes[2] - 1;
1623
1624 if (edgeOrient == eBackwards)
1625 {
1626 reverseOrdering = true;
1627 }
1628 }
1629 else
1630 {
1631 IdxRange[2][0] = 2;
1632 IdxRange[2][1] = nummodes[2];
1633
1634 if (edgeOrient == eBackwards)
1635 {
1636 signChange = true;
1637 }
1638 }
1639 }
1640 break;
1641 }
1642
1643 switch (eid)
1644 {
1645 case 0:
1646 case 4:
1647 case 5:
1648 case 8:
1649 {
1650 IdxRange[1][0] = 0;
1651 IdxRange[1][1] = 1;
1652 }
1653 break;
1654 case 2:
1655 case 6:
1656 case 7:
1657 case 10:
1658 {
1659 if (bType[1] == LibUtilities::eGLL_Lagrange)
1660 {
1661 IdxRange[1][0] = nummodes[1] - 1;
1662 IdxRange[1][1] = nummodes[1];
1663 }
1664 else
1665 {
1666 IdxRange[1][0] = 1;
1667 IdxRange[1][1] = 2;
1668 }
1669 }
1670 break;
1671 case 1:
1672 case 9:
1673 {
1674 if (bType[1] == LibUtilities::eGLL_Lagrange)
1675 {
1676 IdxRange[1][0] = 1;
1677 IdxRange[1][1] = nummodes[1] - 1;
1678
1679 if (edgeOrient == eBackwards)
1680 {
1681 reverseOrdering = true;
1682 }
1683 }
1684 else
1685 {
1686 IdxRange[1][0] = 2;
1687 IdxRange[1][1] = nummodes[1];
1688
1689 if (edgeOrient == eBackwards)
1690 {
1691 signChange = true;
1692 }
1693 }
1694 }
1695 break;
1696 case 3:
1697 case 11:
1698 {
1699 if (bType[1] == LibUtilities::eGLL_Lagrange)
1700 {
1701 IdxRange[1][0] = 1;
1702 IdxRange[1][1] = nummodes[1] - 1;
1703
1704 if (edgeOrient == eForwards)
1705 {
1706 reverseOrdering = true;
1707 }
1708 }
1709 else
1710 {
1711 IdxRange[1][0] = 2;
1712 IdxRange[1][1] = nummodes[1];
1713
1714 if (edgeOrient == eForwards)
1715 {
1716 signChange = true;
1717 }
1718 }
1719 }
1720 break;
1721 }
1722
1723 switch (eid)
1724 {
1725 case 3:
1726 case 4:
1727 case 7:
1728 case 11:
1729 {
1730 IdxRange[0][0] = 0;
1731 IdxRange[0][1] = 1;
1732 }
1733 break;
1734 case 1:
1735 case 5:
1736 case 6:
1737 case 9:
1738 {
1739 if (bType[0] == LibUtilities::eGLL_Lagrange)
1740 {
1741 IdxRange[0][0] = nummodes[0] - 1;
1742 IdxRange[0][1] = nummodes[0];
1743 }
1744 else
1745 {
1746 IdxRange[0][0] = 1;
1747 IdxRange[0][1] = 2;
1748 }
1749 }
1750 break;
1751 case 0:
1752 case 8:
1753 {
1754 if (bType[0] == LibUtilities::eGLL_Lagrange)
1755 {
1756 IdxRange[0][0] = 1;
1757 IdxRange[0][1] = nummodes[0] - 1;
1758
1759 if (edgeOrient == eBackwards)
1760 {
1761 reverseOrdering = true;
1762 }
1763 }
1764 else
1765 {
1766 IdxRange[0][0] = 2;
1767 IdxRange[0][1] = nummodes[0];
1768
1769 if (edgeOrient == eBackwards)
1770 {
1771 signChange = true;
1772 }
1773 }
1774 }
1775 break;
1776 case 2:
1777 case 10:
1778 {
1779 if (bType[0] == LibUtilities::eGLL_Lagrange)
1780 {
1781 IdxRange[0][0] = 1;
1782 IdxRange[0][1] = nummodes[0] - 1;
1783
1784 if (edgeOrient == eForwards)
1785 {
1786 reverseOrdering = true;
1787 }
1788 }
1789 else
1790 {
1791 IdxRange[0][0] = 2;
1792 IdxRange[0][1] = nummodes[0];
1793
1794 if (edgeOrient == eForwards)
1795 {
1796 signChange = true;
1797 }
1798 }
1799 }
1800 break;
1801 }
1802
1803 int cnt = 0;
1804
1805 for (int r = IdxRange[2][0]; r < IdxRange[2][1]; r++)
1806 {
1807 for (int q = IdxRange[1][0]; q < IdxRange[1][1]; q++)
1808 {
1809 for (int p = IdxRange[0][0]; p < IdxRange[0][1]; p++)
1810 {
1811 maparray[cnt++] =
1812 r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
1813 }
1814 }
1815 }
1816
1817 if (reverseOrdering)
1818 {
1819 reverse(maparray.get(), maparray.get() + nEdgeIntCoeffs);
1820 }
1821
1822 if (signChange)
1823 {
1824 for (int p = 1; p < nEdgeIntCoeffs; p += 2)
1825 {
1826 signarray[p] = -1;
1827 }
1828 }
1829}
Nektar::StdRegions::StdExpansion3D::GetEdgeNcoeffs
int GetEdgeNcoeffs(const int i) const
This function returns the number of expansion coefficients belonging to the i-th edge.
Definition: StdExpansion3D.h:136

References ASSERTL1, Nektar::StdRegions::eBackwards, Nektar::StdRegions::eForwards, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion3D::GetEdgeNcoeffs(), Nektar::StdRegions::StdExpansion::m_base, CellMLToNektar.cellml_metadata::p, and Nektar::UnitTests::q().

◆ v_GetEdgeNcoeffs()

int Nektar::StdRegions::StdHexExp::v_GetEdgeNcoeffs ( const int  i) const
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion3D.

Definition at line 2159 of file StdHexExp.cpp.

2160{
2161 ASSERTL2((i >= 0) && (i <= 11), "edge id is out of range");
2162
2163 if ((i == 0) || (i == 2) || (i == 8) || (i == 10))
2164 {
2165 return GetBasisNumModes(0);
2166 }
2167 else if ((i == 1) || (i == 3) || (i == 9) || (i == 11))
2168 {
2169 return GetBasisNumModes(1);
2170 }
2171 else
2172 {
2173 return GetBasisNumModes(2);
2174 }
2175}
Nektar::StdRegions::StdExpansion::GetBasisNumModes
int GetBasisNumModes(const int dir) const
This function returns the number of expansion modes in the dir direction.
Definition: StdExpansion.h:169

References ASSERTL2, and Nektar::StdRegions::StdExpansion::GetBasisNumModes().

◆ v_GetElmtTraceToTraceMap()

void Nektar::StdRegions::StdHexExp::v_GetElmtTraceToTraceMap ( const unsigned int  fid,
Array< OneD, unsigned int > &  maparray,
Array< OneD, int > &  signarray,
Orientation  faceOrient,
int  P,
int  Q 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 1247 of file StdHexExp.cpp.

1251{
1252 int i, j;
1253 int nummodesA = 0, nummodesB = 0;
1254
1255 ASSERTL1(GetBasisType(0) == GetBasisType(1) &&
1256 GetBasisType(0) == GetBasisType(2),
1257 "Method only implemented if BasisType is indentical in "
1258 "all directions");
1259 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
1260 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
1261 "Method only implemented for Modified_A or "
1262 "GLL_Lagrange BasisType");
1263
1264 const int nummodes0 = m_base[0]->GetNumModes();
1265 const int nummodes1 = m_base[1]->GetNumModes();
1266 const int nummodes2 = m_base[2]->GetNumModes();
1267
1268 switch (fid)
1269 {
1270 case 0:
1271 case 5:
1272 nummodesA = nummodes0;
1273 nummodesB = nummodes1;
1274 break;
1275 case 1:
1276 case 3:
1277 nummodesA = nummodes0;
1278 nummodesB = nummodes2;
1279 break;
1280 case 2:
1281 case 4:
1282 nummodesA = nummodes1;
1283 nummodesB = nummodes2;
1284 break;
1285 default:
1286 ASSERTL0(false, "fid must be between 0 and 5");
1287 }
1288
1289 if (P == -1)
1290 {
1291 P = nummodesA;
1292 Q = nummodesB;
1293 }
1294
1295 bool modified = (GetBasisType(0) == LibUtilities::eModified_A);
1296
1297 // check that
1298 if (modified == false)
1299 {
1300 ASSERTL1((P == nummodesA) || (Q == nummodesB),
1301 "Different trace space face dimention "
1302 "and element face dimention not possible for "
1303 "GLL-Lagrange bases");
1304 }
1305
1306 int nFaceCoeffs = P * Q;
1307
1308 if (maparray.size() != nFaceCoeffs)
1309 {
1310 maparray = Array<OneD, unsigned int>(nFaceCoeffs);
1311 }
1312
1313 // fill default mapping as increasing index
1314 for (i = 0; i < nFaceCoeffs; ++i)
1315 {
1316 maparray[i] = i;
1317 }
1318
1319 if (signarray.size() != nFaceCoeffs)
1320 {
1321 signarray = Array<OneD, int>(nFaceCoeffs, 1);
1322 }
1323 else
1324 {
1325 fill(signarray.get(), signarray.get() + nFaceCoeffs, 1);
1326 }
1327
1328 // setup indexing to manage transpose directions
1329 Array<OneD, int> arrayindx(nFaceCoeffs);
1330 for (i = 0; i < Q; i++)
1331 {
1332 for (j = 0; j < P; j++)
1333 {
1334 if (faceOrient < eDir1FwdDir2_Dir2FwdDir1)
1335 {
1336 arrayindx[i * P + j] = i * P + j;
1337 }
1338 else
1339 {
1340 arrayindx[i * P + j] = j * Q + i;
1341 }
1342 }
1343 }
1344
1345 // zero signmap and set maparray to zero if elemental
1346 // modes are not as large as face models
1347 for (i = 0; i < nummodesB; i++)
1348 {
1349 for (j = nummodesA; j < P; j++)
1350 {
1351 signarray[arrayindx[i * P + j]] = 0.0;
1352 maparray[arrayindx[i * P + j]] = maparray[0];
1353 }
1354 }
1355
1356 for (i = nummodesB; i < Q; i++)
1357 {
1358 for (j = 0; j < P; j++)
1359 {
1360 signarray[arrayindx[i * P + j]] = 0.0;
1361 maparray[arrayindx[i * P + j]] = maparray[0];
1362 }
1363 }
1364
1365 // zero signmap and set maparray to zero entry if
1366 // elemental modes are not as large as face modesl
1367 for (i = 0; i < Q; i++)
1368 {
1369 // fill values into map array of trace size
1370 // for element face index
1371 for (j = 0; j < P; j++)
1372 {
1373 maparray[arrayindx[i * P + j]] = i * nummodesA + j;
1374 }
1375
1376 // zero values if P > numModesA
1377 for (j = nummodesA; j < P; j++)
1378 {
1379 signarray[arrayindx[i * P + j]] = 0.0;
1380 maparray[arrayindx[i * P + j]] = maparray[0];
1381 }
1382 }
1383
1384 // zero values if Q > numModesB
1385 for (i = nummodesB; i < Q; i++)
1386 {
1387 for (j = 0; j < P; j++)
1388 {
1389 signarray[arrayindx[i * P + j]] = 0.0;
1390 maparray[arrayindx[i * P + j]] = maparray[0];
1391 }
1392 }
1393
1394 // Now reorientate indices accordign to orientation
1395 if ((faceOrient == eDir1FwdDir1_Dir2BwdDir2) ||
1396 (faceOrient == eDir1BwdDir1_Dir2BwdDir2) ||
1397 (faceOrient == eDir1BwdDir2_Dir2FwdDir1) ||
1398 (faceOrient == eDir1BwdDir2_Dir2BwdDir1))
1399 {
1400 if (faceOrient < eDir1FwdDir2_Dir2FwdDir1)
1401 {
1402 if (modified)
1403 {
1404 for (i = 3; i < Q; i += 2)
1405 {
1406 for (j = 0; j < P; j++)
1407 {
1408 signarray[arrayindx[i * P + j]] *= -1;
1409 }
1410 }
1411
1412 for (i = 0; i < P; i++)
1413 {
1414 swap(maparray[i], maparray[i + P]);
1415 swap(signarray[i], signarray[i + P]);
1416 }
1417 }
1418 else
1419 {
1420 for (i = 0; i < P; i++)
1421 {
1422 for (j = 0; j < Q / 2; j++)
1423 {
1424 swap(maparray[i + j * P],
1425 maparray[i + P * Q - P - j * P]);
1426 swap(signarray[i + j * P],
1427 signarray[i + P * Q - P - j * P]);
1428 }
1429 }
1430 }
1431 }
1432 else
1433 {
1434 if (modified)
1435 {
1436 for (i = 0; i < Q; i++)
1437 {
1438 for (j = 3; j < P; j += 2)
1439 {
1440 signarray[arrayindx[i * P + j]] *= -1;
1441 }
1442 }
1443
1444 for (i = 0; i < Q; i++)
1445 {
1446 swap(maparray[i], maparray[i + Q]);
1447 swap(signarray[i], signarray[i + Q]);
1448 }
1449 }
1450 else
1451 {
1452 for (i = 0; i < P; i++)
1453 {
1454 for (j = 0; j < Q / 2; j++)
1455 {
1456 swap(maparray[i * Q + j], maparray[i * Q + Q - 1 - j]);
1457 swap(signarray[i * Q + j],
1458 signarray[i * Q + Q - 1 - j]);
1459 }
1460 }
1461 }
1462 }
1463 }
1464
1465 if ((faceOrient == eDir1BwdDir1_Dir2FwdDir2) ||
1466 (faceOrient == eDir1BwdDir1_Dir2BwdDir2) ||
1467 (faceOrient == eDir1FwdDir2_Dir2BwdDir1) ||
1468 (faceOrient == eDir1BwdDir2_Dir2BwdDir1))
1469 {
1470 if (faceOrient < eDir1FwdDir2_Dir2FwdDir1)
1471 {
1472 if (modified)
1473 {
1474 for (i = 0; i < Q; i++)
1475 {
1476 for (j = 3; j < P; j += 2)
1477 {
1478 signarray[arrayindx[i * P + j]] *= -1;
1479 }
1480 }
1481
1482 for (i = 0; i < Q; i++)
1483 {
1484 swap(maparray[i * P], maparray[i * P + 1]);
1485 swap(signarray[i * P], signarray[i * P + 1]);
1486 }
1487 }
1488 else
1489 {
1490 for (i = 0; i < Q; i++)
1491 {
1492 for (j = 0; j < P / 2; j++)
1493 {
1494 swap(maparray[i * P + j], maparray[i * P + P - 1 - j]);
1495 swap(signarray[i * P + j],
1496 signarray[i * P + P - 1 - j]);
1497 }
1498 }
1499 }
1500 }
1501 else
1502 {
1503 if (modified)
1504 {
1505 for (i = 3; i < Q; i += 2)
1506 {
1507 for (j = 0; j < P; j++)
1508 {
1509 signarray[arrayindx[i * P + j]] *= -1;
1510 }
1511 }
1512
1513 for (i = 0; i < P; i++)
1514 {
1515 swap(maparray[i * Q], maparray[i * Q + 1]);
1516 swap(signarray[i * Q], signarray[i * Q + 1]);
1517 }
1518 }
1519 else
1520 {
1521 for (i = 0; i < Q; i++)
1522 {
1523 for (j = 0; j < P / 2; j++)
1524 {
1525 swap(maparray[i + j * Q],
1526 maparray[i + P * Q - Q - j * Q]);
1527 swap(signarray[i + j * Q],
1528 signarray[i + P * Q - Q - j * Q]);
1529 }
1530 }
1531 }
1532 }
1533 }
1534}
ASSERTL0
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:208

References ASSERTL0, ASSERTL1, Nektar::StdRegions::eDir1BwdDir1_Dir2BwdDir2, Nektar::StdRegions::eDir1BwdDir1_Dir2FwdDir2, Nektar::StdRegions::eDir1BwdDir2_Dir2BwdDir1, Nektar::StdRegions::eDir1BwdDir2_Dir2FwdDir1, Nektar::StdRegions::eDir1FwdDir1_Dir2BwdDir2, Nektar::StdRegions::eDir1FwdDir2_Dir2BwdDir1, Nektar::StdRegions::eDir1FwdDir2_Dir2FwdDir1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::m_base, and Nektar::LibUtilities::P.

◆ v_GetInteriorMap()

void Nektar::StdRegions::StdHexExp::v_GetInteriorMap ( Array< OneD, unsigned int > &  outarray)
overrideprotectedvirtual
Parameters
outarrayStorage area for computed map.

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 963 of file StdHexExp.cpp.

964{
965 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
966 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
967 "BasisType is not a boundary interior form");
968 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
969 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
970 "BasisType is not a boundary interior form");
971 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
972 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
973 "BasisType is not a boundary interior form");
974
975 int i;
976 int nummodes[3] = {m_base[0]->GetNumModes(), m_base[1]->GetNumModes(),
977 m_base[2]->GetNumModes()};
978
979 int nIntCoeffs = m_ncoeffs - NumBndryCoeffs();
980
981 if (outarray.size() != nIntCoeffs)
982 {
983 outarray = Array<OneD, unsigned int>(nIntCoeffs);
984 }
985
986 const LibUtilities::BasisType Btype[3] = {GetBasisType(0), GetBasisType(1),
987 GetBasisType(2)};
988
989 int p, q, r;
990 int cnt = 0;
991
992 int IntIdx[3][2];
993
994 for (i = 0; i < 3; i++)
995 {
996 if (Btype[i] == LibUtilities::eModified_A)
997 {
998 IntIdx[i][0] = 2;
999 IntIdx[i][1] = nummodes[i];
1000 }
1001 else
1002 {
1003 IntIdx[i][0] = 1;
1004 IntIdx[i][1] = nummodes[i] - 1;
1005 }
1006 }
1007
1008 for (r = IntIdx[2][0]; r < IntIdx[2][1]; r++)
1009 {
1010 for (q = IntIdx[1][0]; q < IntIdx[1][1]; q++)
1011 {
1012 for (p = IntIdx[0][0]; p < IntIdx[0][1]; p++)
1013 {
1014 outarray[cnt++] =
1015 r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
1016 }
1017 }
1018 }
1019}

References ASSERTL1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::m_ncoeffs, Nektar::StdRegions::StdExpansion::NumBndryCoeffs(), CellMLToNektar.cellml_metadata::p, and Nektar::UnitTests::q().

◆ v_GetNedges()

int Nektar::StdRegions::StdHexExp::v_GetNedges ( void  ) const
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion3D.

Definition at line 595 of file StdHexExp.cpp.

596{
597 return 12;
598}

◆ v_GetNtraces()

int Nektar::StdRegions::StdHexExp::v_GetNtraces ( ) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 600 of file StdHexExp.cpp.

601{
602 return 6;
603}

◆ v_GetNverts()

int Nektar::StdRegions::StdHexExp::v_GetNverts ( ) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 590 of file StdHexExp.cpp.

591{
592 return 8;
593}

◆ v_GetSimplexEquiSpacedConnectivity()

void Nektar::StdRegions::StdHexExp::v_GetSimplexEquiSpacedConnectivity ( Array< OneD, int > &  conn,
bool  standard = true 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 2530 of file StdHexExp.cpp.

2532{
2533 int np0 = m_base[0]->GetNumPoints();
2534 int np1 = m_base[1]->GetNumPoints();
2535 int np2 = m_base[2]->GetNumPoints();
2536 int np = max(np0, max(np1, np2));
2537
2538 conn = Array<OneD, int>(6 * (np - 1) * (np - 1) * (np - 1));
2539
2540 int row = 0;
2541 int rowp1 = 0;
2542 int cnt = 0;
2543 int plane = 0;
2544 for (int i = 0; i < np - 1; ++i)
2545 {
2546 for (int j = 0; j < np - 1; ++j)
2547 {
2548 rowp1 += np;
2549 for (int k = 0; k < np - 1; ++k)
2550 {
2551 conn[cnt++] = plane + row + k;
2552 conn[cnt++] = plane + row + k + 1;
2553 conn[cnt++] = plane + rowp1 + k;
2554
2555 conn[cnt++] = plane + rowp1 + k + 1;
2556 conn[cnt++] = plane + rowp1 + k;
2557 conn[cnt++] = plane + row + k + 1;
2558 }
2559 row += np;
2560 }
2561 plane += np * np;
2562 }
2563}

References Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetTraceBasisKey()

const LibUtilities::BasisKey Nektar::StdRegions::StdHexExp::v_GetTraceBasisKey ( const int  i,
const int  k 
) const
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 731 of file StdHexExp.cpp.

733{
734 ASSERTL2(i >= 0 && i <= 5, "face id is out of range");
735 ASSERTL2(k >= 0 && k <= 1, "basis key id is out of range");
736
737 int dir = k;
738 switch (i)
739 {
740 case 0:
741 case 5:
742 dir = k;
743 break;
744 case 1:
745 case 3:
746 dir = 2 * k;
747 break;
748 case 2:
749 case 4:
750 dir = k + 1;
751 break;
752 }
753
754 return EvaluateQuadFaceBasisKey(k, m_base[dir]->GetBasisType(),
755 m_base[dir]->GetNumPoints(),
756 m_base[dir]->GetNumModes());
757}
Nektar::StdRegions::EvaluateQuadFaceBasisKey
LibUtilities::BasisKey EvaluateQuadFaceBasisKey(const int facedir, const LibUtilities::BasisType faceDirBasisType, const int numpoints, const int nummodes)
Definition: StdExpansion3D.cpp:438

References ASSERTL2, Nektar::StdRegions::EvaluateQuadFaceBasisKey(), Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::GetNumPoints(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetTraceCoeffMap()

void Nektar::StdRegions::StdHexExp::v_GetTraceCoeffMap ( const unsigned int  fid,
Array< OneD, unsigned int > &  maparray 
)
overrideprotectedvirtual

Only for basis type Modified_A or GLL_LAGRANGE in all directions.

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 1123 of file StdHexExp.cpp.

1125{
1126 int i, j;
1127 int nummodesA = 0, nummodesB = 0;
1128
1129 ASSERTL1(GetBasisType(0) == GetBasisType(1) &&
1130 GetBasisType(0) == GetBasisType(2),
1131 "Method only implemented if BasisType is indentical in "
1132 "all directions");
1133 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
1134 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
1135 "Method only implemented for Modified_A or "
1136 "GLL_Lagrange BasisType");
1137
1138 const int nummodes0 = m_base[0]->GetNumModes();
1139 const int nummodes1 = m_base[1]->GetNumModes();
1140 const int nummodes2 = m_base[2]->GetNumModes();
1141
1142 switch (fid)
1143 {
1144 case 0:
1145 case 5:
1146 nummodesA = nummodes0;
1147 nummodesB = nummodes1;
1148 break;
1149 case 1:
1150 case 3:
1151 nummodesA = nummodes0;
1152 nummodesB = nummodes2;
1153 break;
1154 case 2:
1155 case 4:
1156 nummodesA = nummodes1;
1157 nummodesB = nummodes2;
1158 break;
1159 default:
1160 ASSERTL0(false, "fid must be between 0 and 5");
1161 }
1162
1163 int nFaceCoeffs = nummodesA * nummodesB;
1164
1165 if (maparray.size() != nFaceCoeffs)
1166 {
1167 maparray = Array<OneD, unsigned int>(nFaceCoeffs);
1168 }
1169
1170 bool modified = (GetBasisType(0) == LibUtilities::eModified_A);
1171
1172 int offset = 0;
1173 int jump1 = 1;
1174 int jump2 = 1;
1175
1176 switch (fid)
1177 {
1178 case 5:
1179 {
1180 if (modified)
1181 {
1182 offset = nummodes0 * nummodes1;
1183 }
1184 else
1185 {
1186 offset = (nummodes2 - 1) * nummodes0 * nummodes1;
1187 jump1 = nummodes0;
1188 }
1189 }
1190 /* Falls through. */
1191 case 0:
1192 {
1193 jump1 = nummodes0;
1194 break;
1195 }
1196 case 3:
1197 {
1198 if (modified)
1199 {
1200 offset = nummodes0;
1201 }
1202 else
1203 {
1204 offset = nummodes0 * (nummodes1 - 1);
1205 jump1 = nummodes0 * nummodes1;
1206 }
1207 }
1208 /* Falls through. */
1209 case 1:
1210 {
1211 jump1 = nummodes0 * nummodes1;
1212 break;
1213 }
1214 case 2:
1215 {
1216 if (modified)
1217 {
1218 offset = 1;
1219 }
1220 else
1221 {
1222 offset = nummodes0 - 1;
1223 jump1 = nummodes0 * nummodes1;
1224 jump2 = nummodes0;
1225 }
1226 }
1227 /* Falls through. */
1228 case 4:
1229 {
1230 jump1 = nummodes0 * nummodes1;
1231 jump2 = nummodes0;
1232 break;
1233 }
1234 default:
1235 ASSERTL0(false, "fid must be between 0 and 5");
1236 }
1237
1238 for (i = 0; i < nummodesB; i++)
1239 {
1240 for (j = 0; j < nummodesA; j++)
1241 {
1242 maparray[i * nummodesA + j] = i * jump1 + j * jump2 + offset;
1243 }
1244 }
1245}

References ASSERTL0, ASSERTL1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetTraceInteriorToElementMap()

void Nektar::StdRegions::StdHexExp::v_GetTraceInteriorToElementMap ( const int  fid,
Array< OneD, unsigned int > &  maparray,
Array< OneD, int > &  signarray,
const Orientation  faceOrient = eDir1FwdDir1_Dir2FwdDir2 
)
overrideprotectedvirtual

Generate mapping describing which elemental modes lie on the interior of a given face. Accounts for face orientation.

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 1835 of file StdHexExp.cpp.

1838{
1839 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
1840 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
1841 "BasisType is not a boundary interior form");
1842 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
1843 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
1844 "BasisType is not a boundary interior form");
1845 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
1846 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
1847 "BasisType is not a boundary interior form");
1848
1849 ASSERTL1((fid >= 0) && (fid < 6), "local face id must be between 0 and 5");
1850
1851 int nFaceIntCoeffs = v_GetTraceIntNcoeffs(fid);
1852
1853 if (maparray.size() != nFaceIntCoeffs)
1854 {
1855 maparray = Array<OneD, unsigned int>(nFaceIntCoeffs);
1856 }
1857
1858 if (signarray.size() != nFaceIntCoeffs)
1859 {
1860 signarray = Array<OneD, int>(nFaceIntCoeffs, 1);
1861 }
1862 else
1863 {
1864 fill(signarray.get(), signarray.get() + nFaceIntCoeffs, 1);
1865 }
1866
1867 int nummodes[3] = {m_base[0]->GetNumModes(), m_base[1]->GetNumModes(),
1868 m_base[2]->GetNumModes()};
1869
1870 const LibUtilities::BasisType bType[3] = {GetBasisType(0), GetBasisType(1),
1871 GetBasisType(2)};
1872
1873 int nummodesA = 0;
1874 int nummodesB = 0;
1875
1876 // Determine the number of modes in face directions A & B based
1877 // on the face index given.
1878 switch (fid)
1879 {
1880 case 0:
1881 case 5:
1882 {
1883 nummodesA = nummodes[0];
1884 nummodesB = nummodes[1];
1885 }
1886 break;
1887 case 1:
1888 case 3:
1889 {
1890 nummodesA = nummodes[0];
1891 nummodesB = nummodes[2];
1892 }
1893 break;
1894 case 2:
1895 case 4:
1896 {
1897 nummodesA = nummodes[1];
1898 nummodesB = nummodes[2];
1899 }
1900 }
1901
1902 Array<OneD, int> arrayindx(nFaceIntCoeffs);
1903
1904 // Create a mapping array to account for transposition of the
1905 // coordinates due to face orientation.
1906 for (int i = 0; i < (nummodesB - 2); i++)
1907 {
1908 for (int j = 0; j < (nummodesA - 2); j++)
1909 {
1910 if (faceOrient < eDir1FwdDir2_Dir2FwdDir1)
1911 {
1912 arrayindx[i * (nummodesA - 2) + j] = i * (nummodesA - 2) + j;
1913 }
1914 else
1915 {
1916 arrayindx[i * (nummodesA - 2) + j] = j * (nummodesB - 2) + i;
1917 }
1918 }
1919 }
1920
1921 int IdxRange[3][2];
1922 int Incr[3];
1923
1924 Array<OneD, int> sign0(nummodes[0], 1);
1925 Array<OneD, int> sign1(nummodes[1], 1);
1926 Array<OneD, int> sign2(nummodes[2], 1);
1927
1928 // Set the upper and lower bounds, and increment for the faces
1929 // involving the first coordinate direction.
1930 switch (fid)
1931 {
1932 case 0: // bottom face
1933 {
1934 IdxRange[2][0] = 0;
1935 IdxRange[2][1] = 1;
1936 Incr[2] = 1;
1937 }
1938 break;
1939 case 5: // top face
1940 {
1941 if (bType[2] == LibUtilities::eGLL_Lagrange)
1942 {
1943 IdxRange[2][0] = nummodes[2] - 1;
1944 IdxRange[2][1] = nummodes[2];
1945 Incr[2] = 1;
1946 }
1947 else
1948 {
1949 IdxRange[2][0] = 1;
1950 IdxRange[2][1] = 2;
1951 Incr[2] = 1;
1952 }
1953 }
1954 break;
1955 default: // all other faces
1956 {
1957 if (bType[2] == LibUtilities::eGLL_Lagrange)
1958 {
1959 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 2)
1960 {
1961 IdxRange[2][0] = nummodes[2] - 2;
1962 IdxRange[2][1] = 0;
1963 Incr[2] = -1;
1964 }
1965 else
1966 {
1967 IdxRange[2][0] = 1;
1968 IdxRange[2][1] = nummodes[2] - 1;
1969 Incr[2] = 1;
1970 }
1971 }
1972 else
1973 {
1974 IdxRange[2][0] = 2;
1975 IdxRange[2][1] = nummodes[2];
1976 Incr[2] = 1;
1977
1978 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 2)
1979 {
1980 for (int i = 3; i < nummodes[2]; i += 2)
1981 {
1982 sign2[i] = -1;
1983 }
1984 }
1985 }
1986 }
1987 }
1988
1989 // Set the upper and lower bounds, and increment for the faces
1990 // involving the second coordinate direction.
1991 switch (fid)
1992 {
1993 case 1:
1994 {
1995 IdxRange[1][0] = 0;
1996 IdxRange[1][1] = 1;
1997 Incr[1] = 1;
1998 }
1999 break;
2000 case 3:
2001 {
2002 if (bType[1] == LibUtilities::eGLL_Lagrange)
2003 {
2004 IdxRange[1][0] = nummodes[1] - 1;
2005 IdxRange[1][1] = nummodes[1];
2006 Incr[1] = 1;
2007 }
2008 else
2009 {
2010 IdxRange[1][0] = 1;
2011 IdxRange[1][1] = 2;
2012 Incr[1] = 1;
2013 }
2014 }
2015 break;
2016 case 0:
2017 case 5:
2018 {
2019 if (bType[1] == LibUtilities::eGLL_Lagrange)
2020 {
2021 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 2)
2022 {
2023 IdxRange[1][0] = nummodes[1] - 2;
2024 IdxRange[1][1] = 0;
2025 Incr[1] = -1;
2026 }
2027 else
2028 {
2029 IdxRange[1][0] = 1;
2030 IdxRange[1][1] = nummodes[1] - 1;
2031 Incr[1] = 1;
2032 }
2033 }
2034 else
2035 {
2036 IdxRange[1][0] = 2;
2037 IdxRange[1][1] = nummodes[1];
2038 Incr[1] = 1;
2039
2040 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 2)
2041 {
2042 for (int i = 3; i < nummodes[1]; i += 2)
2043 {
2044 sign1[i] = -1;
2045 }
2046 }
2047 }
2048 }
2049 break;
2050 default: // case2: case4:
2051 {
2052 if (bType[1] == LibUtilities::eGLL_Lagrange)
2053 {
2054 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 4 > 1)
2055 {
2056 IdxRange[1][0] = nummodes[1] - 2;
2057 IdxRange[1][1] = 0;
2058 Incr[1] = -1;
2059 }
2060 else
2061 {
2062 IdxRange[1][0] = 1;
2063 IdxRange[1][1] = nummodes[1] - 1;
2064 Incr[1] = 1;
2065 }
2066 }
2067 else
2068 {
2069 IdxRange[1][0] = 2;
2070 IdxRange[1][1] = nummodes[1];
2071 Incr[1] = 1;
2072
2073 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 4 > 1)
2074 {
2075 for (int i = 3; i < nummodes[1]; i += 2)
2076 {
2077 sign1[i] = -1;
2078 }
2079 }
2080 }
2081 }
2082 }
2083
2084 switch (fid)
2085 {
2086 case 4:
2087 {
2088 IdxRange[0][0] = 0;
2089 IdxRange[0][1] = 1;
2090 Incr[0] = 1;
2091 }
2092 break;
2093 case 2:
2094 {
2095 if (bType[0] == LibUtilities::eGLL_Lagrange)
2096 {
2097 IdxRange[0][0] = nummodes[0] - 1;
2098 IdxRange[0][1] = nummodes[0];
2099 Incr[0] = 1;
2100 }
2101 else
2102 {
2103 IdxRange[0][0] = 1;
2104 IdxRange[0][1] = 2;
2105 Incr[0] = 1;
2106 }
2107 }
2108 break;
2109 default:
2110 {
2111 if (bType[0] == LibUtilities::eGLL_Lagrange)
2112 {
2113 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 4 > 1)
2114 {
2115 IdxRange[0][0] = nummodes[0] - 2;
2116 IdxRange[0][1] = 0;
2117 Incr[0] = -1;
2118 }
2119 else
2120 {
2121 IdxRange[0][0] = 1;
2122 IdxRange[0][1] = nummodes[0] - 1;
2123 Incr[0] = 1;
2124 }
2125 }
2126 else
2127 {
2128 IdxRange[0][0] = 2;
2129 IdxRange[0][1] = nummodes[0];
2130 Incr[0] = 1;
2131
2132 if (((int)(faceOrient - eDir1FwdDir1_Dir2FwdDir2)) % 4 > 1)
2133 {
2134 for (int i = 3; i < nummodes[0]; i += 2)
2135 {
2136 sign0[i] = -1;
2137 }
2138 }
2139 }
2140 }
2141 }
2142
2143 int cnt = 0;
2144
2145 for (int r = IdxRange[2][0]; r != IdxRange[2][1]; r += Incr[2])
2146 {
2147 for (int q = IdxRange[1][0]; q != IdxRange[1][1]; q += Incr[1])
2148 {
2149 for (int p = IdxRange[0][0]; p != IdxRange[0][1]; p += Incr[0])
2150 {
2151 maparray[arrayindx[cnt]] =
2152 r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
2153 signarray[arrayindx[cnt++]] = sign0[p] * sign1[q] * sign2[r];
2154 }
2155 }
2156 }
2157}
Nektar::StdRegions::StdHexExp::v_GetTraceIntNcoeffs
int v_GetTraceIntNcoeffs(const int i) const override
Definition: StdHexExp.cpp:666

References ASSERTL1, Nektar::StdRegions::eDir1FwdDir1_Dir2FwdDir2, Nektar::StdRegions::eDir1FwdDir2_Dir2FwdDir1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::m_base, CellMLToNektar.cellml_metadata::p, Nektar::UnitTests::q(), and v_GetTraceIntNcoeffs().

◆ v_GetTraceIntNcoeffs()

int Nektar::StdRegions::StdHexExp::v_GetTraceIntNcoeffs ( const int  i) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 666 of file StdHexExp.cpp.

667{
668 ASSERTL2((i >= 0) && (i <= 5), "face id is out of range");
669 if ((i == 0) || (i == 5))
670 {
671 return (GetBasisNumModes(0) - 2) * (GetBasisNumModes(1) - 2);
672 }
673 else if ((i == 1) || (i == 3))
674 {
675 return (GetBasisNumModes(0) - 2) * (GetBasisNumModes(2) - 2);
676 }
677 else
678 {
679 return (GetBasisNumModes(1) - 2) * (GetBasisNumModes(2) - 2);
680 }
681}

References ASSERTL2, and Nektar::StdRegions::StdExpansion::GetBasisNumModes().

Referenced by v_GetTraceInteriorToElementMap().

◆ v_GetTraceNcoeffs()

int Nektar::StdRegions::StdHexExp::v_GetTraceNcoeffs ( const int  i) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 649 of file StdHexExp.cpp.

650{
651 ASSERTL2((i >= 0) && (i <= 5), "face id is out of range");
652 if ((i == 0) || (i == 5))
653 {
654 return GetBasisNumModes(0) * GetBasisNumModes(1);
655 }
656 else if ((i == 1) || (i == 3))
657 {
658 return GetBasisNumModes(0) * GetBasisNumModes(2);
659 }
660 else
661 {
662 return GetBasisNumModes(1) * GetBasisNumModes(2);
663 }
664}

References ASSERTL2, and Nektar::StdRegions::StdExpansion::GetBasisNumModes().

◆ v_GetTraceNumModes()

void Nektar::StdRegions::StdHexExp::v_GetTraceNumModes ( const int  fid,
int &  numModes0,
int &  numModes1,
Orientation  faceOrient = eDir1FwdDir1_Dir2FwdDir2 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 787 of file StdHexExp.cpp.

789{
790 int nummodes[3] = {m_base[0]->GetNumModes(), m_base[1]->GetNumModes(),
791 m_base[2]->GetNumModes()};
792 switch (fid)
793 {
794 case 0:
795 case 5:
796 {
797 numModes0 = nummodes[0];
798 numModes1 = nummodes[1];
799 }
800 break;
801 case 1:
802 case 3:
803 {
804 numModes0 = nummodes[0];
805 numModes1 = nummodes[2];
806 }
807 break;
808 case 2:
809 case 4:
810 {
811 numModes0 = nummodes[1];
812 numModes1 = nummodes[2];
813 }
814 break;
815 default:
816 {
817 ASSERTL0(false, "fid out of range");
818 }
819 break;
820 }
821
822 if (faceOrient >= eDir1FwdDir2_Dir2FwdDir1)
823 {
824 std::swap(numModes0, numModes1);
825 }
826}

References ASSERTL0, Nektar::StdRegions::eDir1FwdDir2_Dir2FwdDir1, and Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetTraceNumPoints()

int Nektar::StdRegions::StdHexExp::v_GetTraceNumPoints ( const int  i) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 683 of file StdHexExp.cpp.

684{
685 ASSERTL2(i >= 0 && i <= 5, "face id is out of range");
686
687 if (i == 0 || i == 5)
688 {
689 return m_base[0]->GetNumPoints() * m_base[1]->GetNumPoints();
690 }
691 else if (i == 1 || i == 3)
692 {
693 return m_base[0]->GetNumPoints() * m_base[2]->GetNumPoints();
694 }
695 else
696 {
697 return m_base[1]->GetNumPoints() * m_base[2]->GetNumPoints();
698 }
699}

References ASSERTL2, and Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetTracePointsKey()

LibUtilities::PointsKey Nektar::StdRegions::StdHexExp::v_GetTracePointsKey ( const int  i,
const int  j 
) const
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 701 of file StdHexExp.cpp.

703{
704 ASSERTL2(i >= 0 && i <= 5, "face id is out of range");
705 ASSERTL2(j == 0 || j == 1, "face direction is out of range");
706
707 if (i == 0 || i == 5)
708 {
709 return m_base[j]->GetPointsKey();
710 }
711 else if (i == 1 || i == 3)
712 {
713 return m_base[2 * j]->GetPointsKey();
714 }
715 else
716 {
717 return m_base[j + 1]->GetPointsKey();
718 }
719}

References ASSERTL2, and Nektar::StdRegions::StdExpansion::m_base.

◆ v_GetVertexMap()

int Nektar::StdRegions::StdHexExp::v_GetVertexMap ( int  localVertexId,
bool  useCoeffPacking = false 
)
overrideprotectedvirtual

Expansions in each of the three dimensions must be of type LibUtilities::eModified_A or LibUtilities::eGLL_Lagrange.

Parameters
localVertexIdID of vertex (0..7)
Returns
Position of vertex in local numbering scheme.

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 835 of file StdHexExp.cpp.

836{
837 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
838 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
839 "BasisType is not a boundary interior form");
840 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
841 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
842 "BasisType is not a boundary interior form");
843 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
844 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
845 "BasisType is not a boundary interior form");
846
847 ASSERTL1((localVertexId >= 0) && (localVertexId < 8),
848 "local vertex id must be between 0 and 7");
849
850 int p = 0;
851 int q = 0;
852 int r = 0;
853
854 // Retrieve the number of modes in each dimension.
855 int nummodes[3] = {m_base[0]->GetNumModes(), m_base[1]->GetNumModes(),
856 m_base[2]->GetNumModes()};
857
858 if (useCoeffPacking == true) // follow packing of coefficients i.e q,r,p
859 {
860 if (localVertexId > 3)
861 {
862 if (GetBasisType(2) == LibUtilities::eGLL_Lagrange)
863 {
864 r = nummodes[2] - 1;
865 }
866 else
867 {
868 r = 1;
869 }
870 }
871
872 switch (localVertexId % 4)
873 {
874 case 0:
875 break;
876 case 1:
877 {
878 if (GetBasisType(0) == LibUtilities::eGLL_Lagrange)
879 {
880 p = nummodes[0] - 1;
881 }
882 else
883 {
884 p = 1;
885 }
886 }
887 break;
888 case 2:
889 {
890 if (GetBasisType(1) == LibUtilities::eGLL_Lagrange)
891 {
892 q = nummodes[1] - 1;
893 }
894 else
895 {
896 q = 1;
897 }
898 }
899 break;
900 case 3:
901 {
902 if (GetBasisType(1) == LibUtilities::eGLL_Lagrange)
903 {
904 p = nummodes[0] - 1;
905 q = nummodes[1] - 1;
906 }
907 else
908 {
909 p = 1;
910 q = 1;
911 }
912 }
913 break;
914 }
915 }
916 else
917 {
918 // Right face (vertices 1,2,5,6)
919 if ((localVertexId % 4) % 3 > 0)
920 {
921 if (GetBasisType(0) == LibUtilities::eGLL_Lagrange)
922 {
923 p = nummodes[0] - 1;
924 }
925 else
926 {
927 p = 1;
928 }
929 }
930 // Back face (vertices 2,3,6,7)
931 if (localVertexId % 4 > 1)
932 {
933 if (GetBasisType(1) == LibUtilities::eGLL_Lagrange)
934 {
935 q = nummodes[1] - 1;
936 }
937 else
938 {
939 q = 1;
940 }
941 }
942
943 // Top face (vertices 4,5,6,7)
944 if (localVertexId > 3)
945 {
946 if (GetBasisType(2) == LibUtilities::eGLL_Lagrange)
947 {
948 r = nummodes[2] - 1;
949 }
950 else
951 {
952 r = 1;
953 }
954 }
955 }
956 // Compute the local number.
957 return r * nummodes[0] * nummodes[1] + q * nummodes[0] + p;
958}

References ASSERTL1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), Nektar::StdRegions::StdExpansion::m_base, CellMLToNektar.cellml_metadata::p, and Nektar::UnitTests::q().

◆ v_HelmholtzMatrixOp()

void Nektar::StdRegions::StdHexExp::v_HelmholtzMatrixOp ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
const StdMatrixKey &  mkey 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2300 of file StdHexExp.cpp.

2303{
2304 StdHexExp::v_HelmholtzMatrixOp_MatFree(inarray, outarray, mkey);
2305}
Nektar::StdRegions::StdExpansion3D::v_HelmholtzMatrixOp_MatFree
void v_HelmholtzMatrixOp_MatFree(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::StdMatrixKey &mkey) override
Definition: StdExpansion3D.cpp:324

References Nektar::StdRegions::StdExpansion3D::v_HelmholtzMatrixOp_MatFree().

◆ v_IProductWRTBase()

void Nektar::StdRegions::StdHexExp::v_IProductWRTBase ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

\( \begin{array}{rcl} I_{pqr} = (\phi_{pqr}, u)_{\delta} & = & \sum_{i=0}^{nq_0} \sum_{j=0}^{nq_1} \sum_{k=0}^{nq_2} \psi_{p}^{a}(\xi_{1i}) \psi_{q}^{a}(\xi_{2j}) \psi_{r}^{a}(\xi_{3k}) w_i w_j w_k u(\xi_{1,i} \xi_{2,j} \xi_{3,k}) J_{i,j,k}\\ & = & \sum_{i=0}^{nq_0} \psi_p^a(\xi_{1,i}) \sum_{j=0}^{nq_1} \psi_{q}^a(\xi_{2,j}) \sum_{k=0}^{nq_2} \psi_{r}^a u(\xi_{1i},\xi_{2j},\xi_{3k}) J_{i,j,k} \end{array} \)
where \( \phi_{pqr} (\xi_1 , \xi_2 , \xi_3) = \psi_p^a( \xi_1) \psi_{q}^a(\xi_2) \psi_{r}^a(\xi_3) \)
which can be implemented as
\(f_{r} (\xi_{3k}) = \sum_{k=0}^{nq_3} \psi_{r}^a u(\xi_{1i},\xi_{2j}, \xi_{3k}) J_{i,j,k} = {\bf B_3 U} \)
\( g_{q} (\xi_{3k}) = \sum_{j=0}^{nq_1} \psi_{q}^a(\xi_{2j}) f_{r}(\xi_{3k}) = {\bf B_2 F} \)
\( (\phi_{pqr}, u)_{\delta} = \sum_{k=0}^{nq_0} \psi_{p}^a (\xi_{3k}) g_{q} (\xi_{3k}) = {\bf B_1 G} \)

Parameters
inarray?
outarray?

Implements Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 320 of file StdHexExp.cpp.

322{
323 if (m_base[0]->Collocation() && m_base[1]->Collocation() &&
324 m_base[2]->Collocation())
325 {
326 MultiplyByQuadratureMetric(inarray, outarray);
327 }
328 else
329 {
330 StdHexExp::v_IProductWRTBase_SumFac(inarray, outarray);
331 }
332}
Nektar::StdRegions::StdExpansion::MultiplyByQuadratureMetric
void MultiplyByQuadratureMetric(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
Definition: StdExpansion.h:723
Nektar::StdRegions::StdHexExp::v_IProductWRTBase_SumFac
void v_IProductWRTBase_SumFac(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool multbyweights=true) override
Definition: StdHexExp.cpp:337

References Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::MultiplyByQuadratureMetric(), and v_IProductWRTBase_SumFac().

◆ v_IProductWRTBase_SumFac()

void Nektar::StdRegions::StdHexExp::v_IProductWRTBase_SumFac ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
bool  multiplybyweights = true 
)
overrideprotectedvirtual

Implementation of the sum-factorization inner product operation.

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 337 of file StdHexExp.cpp.

340{
341 int nquad0 = m_base[0]->GetNumPoints();
342 int nquad1 = m_base[1]->GetNumPoints();
343 int nquad2 = m_base[2]->GetNumPoints();
344 int order0 = m_base[0]->GetNumModes();
345 int order1 = m_base[1]->GetNumModes();
346
347 Array<OneD, NekDouble> wsp(nquad0 * nquad1 * (nquad2 + order0) +
348 order0 * order1 * nquad2);
349
350 if (multiplybyweights)
351 {
352 Array<OneD, NekDouble> tmp(inarray.size());
353 MultiplyByQuadratureMetric(inarray, tmp);
354
355 StdHexExp::IProductWRTBase_SumFacKernel(
356 m_base[0]->GetBdata(), m_base[1]->GetBdata(), m_base[2]->GetBdata(),
357 tmp, outarray, wsp, true, true, true);
358 }
359 else
360 {
361 StdHexExp::IProductWRTBase_SumFacKernel(
362 m_base[0]->GetBdata(), m_base[1]->GetBdata(), m_base[2]->GetBdata(),
363 inarray, outarray, wsp, true, true, true);
364 }
365}
Nektar::StdRegions::StdExpansion3D::IProductWRTBase_SumFacKernel
void IProductWRTBase_SumFacKernel(const Array< OneD, const NekDouble > &base0, const Array< OneD, const NekDouble > &base1, const Array< OneD, const NekDouble > &base2, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wsp, bool doCheckCollDir0, bool doCheckCollDir1, bool doCheckCollDir2)
Definition: StdExpansion3D.cpp:108

References Nektar::StdRegions::StdExpansion3D::IProductWRTBase_SumFacKernel(), Nektar::StdRegions::StdExpansion::m_base, and Nektar::StdRegions::StdExpansion::MultiplyByQuadratureMetric().

Referenced by v_IProductWRTBase().

◆ v_IProductWRTBase_SumFacKernel()

void Nektar::StdRegions::StdHexExp::v_IProductWRTBase_SumFacKernel ( const Array< OneD, const NekDouble > &  base0,
const Array< OneD, const NekDouble > &  base1,
const Array< OneD, const NekDouble > &  base2,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
Array< OneD, NekDouble > &  wsp,
bool  doCheckCollDir0,
bool  doCheckCollDir1,
bool  doCheckCollDir2 
)
overrideprotectedvirtual

Implementation of the sum-factorisation inner product operation.

Todo:
Implement cases where only some directions are collocated.

Implements Nektar::StdRegions::StdExpansion3D.

Definition at line 371 of file StdHexExp.cpp.

378{
379 int nquad0 = m_base[0]->GetNumPoints();
380 int nquad1 = m_base[1]->GetNumPoints();
381 int nquad2 = m_base[2]->GetNumPoints();
382 int nmodes0 = m_base[0]->GetNumModes();
383 int nmodes1 = m_base[1]->GetNumModes();
384 int nmodes2 = m_base[2]->GetNumModes();
385
386 bool colldir0 = doCheckCollDir0 ? (m_base[0]->Collocation()) : false;
387 bool colldir1 = doCheckCollDir1 ? (m_base[1]->Collocation()) : false;
388 bool colldir2 = doCheckCollDir2 ? (m_base[2]->Collocation()) : false;
389
390 if (colldir0 && colldir1 && colldir2)
391 {
392 Vmath::Vcopy(m_ncoeffs, inarray.get(), 1, outarray.get(), 1);
393 }
394 else
395 {
396 ASSERTL1(wsp.size() >= nmodes0 * nquad2 * (nquad1 + nmodes1),
397 "Insufficient workspace size");
398
399 Array<OneD, NekDouble> tmp0 = wsp;
400 Array<OneD, NekDouble> tmp1 = wsp + nmodes0 * nquad1 * nquad2;
401
402 if (colldir0)
403 {
404 // reshuffle data for next operation.
405 for (int n = 0; n < nmodes0; ++n)
406 {
407 Vmath::Vcopy(nquad1 * nquad2, inarray.get() + n, nquad0,
408 tmp0.get() + nquad1 * nquad2 * n, 1);
409 }
410 }
411 else
412 {
413 Blas::Dgemm('T', 'N', nquad1 * nquad2, nmodes0, nquad0, 1.0,
414 inarray.get(), nquad0, base0.get(), nquad0, 0.0,
415 tmp0.get(), nquad1 * nquad2);
416 }
417
418 if (colldir1)
419 {
420 // reshuffle data for next operation.
421 for (int n = 0; n < nmodes1; ++n)
422 {
423 Vmath::Vcopy(nquad2 * nmodes0, tmp0.get() + n, nquad1,
424 tmp1.get() + nquad2 * nmodes0 * n, 1);
425 }
426 }
427 else
428 {
429 Blas::Dgemm('T', 'N', nquad2 * nmodes0, nmodes1, nquad1, 1.0,
430 tmp0.get(), nquad1, base1.get(), nquad1, 0.0,
431 tmp1.get(), nquad2 * nmodes0);
432 }
433
434 if (colldir2)
435 {
436 // reshuffle data for next operation.
437 for (int n = 0; n < nmodes2; ++n)
438 {
439 Vmath::Vcopy(nmodes0 * nmodes1, tmp1.get() + n, nquad2,
440 outarray.get() + nmodes0 * nmodes1 * n, 1);
441 }
442 }
443 else
444 {
445 Blas::Dgemm('T', 'N', nmodes0 * nmodes1, nmodes2, nquad2, 1.0,
446 tmp1.get(), nquad2, base2.get(), nquad2, 0.0,
447 outarray.get(), nmodes0 * nmodes1);
448 }
449 }
450}

References ASSERTL1, Blas::Dgemm(), Nektar::StdRegions::StdExpansion::m_base, Nektar::StdRegions::StdExpansion::m_ncoeffs, and Vmath::Vcopy().

◆ v_IProductWRTDerivBase()

void Nektar::StdRegions::StdHexExp::v_IProductWRTDerivBase ( const int  dir,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 452 of file StdHexExp.cpp.

455{
456 StdHexExp::IProductWRTDerivBase_SumFac(dir, inarray, outarray);
457}
Nektar::StdRegions::StdExpansion::IProductWRTDerivBase_SumFac
void IProductWRTDerivBase_SumFac(const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
Definition: StdExpansion.h:1209

References Nektar::StdRegions::StdExpansion::IProductWRTDerivBase_SumFac().

◆ v_IProductWRTDerivBase_SumFac()

void Nektar::StdRegions::StdHexExp::v_IProductWRTDerivBase_SumFac ( const int  dir,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 459 of file StdHexExp.cpp.

462{
463 ASSERTL0((dir == 0) || (dir == 1) || (dir == 2),
464 "input dir is out of range");
465
466 int nquad1 = m_base[1]->GetNumPoints();
467 int nquad2 = m_base[2]->GetNumPoints();
468 int order0 = m_base[0]->GetNumModes();
469 int order1 = m_base[1]->GetNumModes();
470
471 // If outarray > inarray then no need for temporary storage.
472 Array<OneD, NekDouble> tmp = outarray;
473 if (outarray.size() < inarray.size())
474 {
475 tmp = Array<OneD, NekDouble>(inarray.size());
476 }
477
478 // Need workspace for sumfackernel though
479 Array<OneD, NekDouble> wsp(order0 * nquad2 * (nquad1 + order1));
480
481 // multiply by integration constants
482 MultiplyByQuadratureMetric(inarray, tmp);
483
484 // perform sum-factorisation
485 switch (dir)
486 {
487 case 0:
488 IProductWRTBase_SumFacKernel(
489 m_base[0]->GetDbdata(), m_base[1]->GetBdata(),
490 m_base[2]->GetBdata(), tmp, outarray, wsp, false, true, true);
491 break;
492 case 1:
493 IProductWRTBase_SumFacKernel(
494 m_base[0]->GetBdata(), m_base[1]->GetDbdata(),
495 m_base[2]->GetBdata(), tmp, outarray, wsp, true, false, true);
496 break;
497 case 2:
498 IProductWRTBase_SumFacKernel(
499 m_base[0]->GetBdata(), m_base[1]->GetBdata(),
500 m_base[2]->GetDbdata(), tmp, outarray, wsp, true, true, false);
501 break;
502 }
503}

References ASSERTL0, Nektar::StdRegions::StdExpansion3D::IProductWRTBase_SumFacKernel(), Nektar::StdRegions::StdExpansion::m_base, and Nektar::StdRegions::StdExpansion::MultiplyByQuadratureMetric().

◆ v_IsBoundaryInteriorExpansion()

bool Nektar::StdRegions::StdHexExp::v_IsBoundaryInteriorExpansion ( ) const
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 55 of file StdHexExp.cpp.

56{
57 return (m_base[0]->GetBasisType() == LibUtilities::eModified_A &&
58 m_base[1]->GetBasisType() == LibUtilities::eModified_A &&
59 m_base[2]->GetBasisType() == LibUtilities::eModified_A) ||
60 (m_base[0]->GetBasisType() == LibUtilities::eGLL_Lagrange &&
61 m_base[1]->GetBasisType() == LibUtilities::eGLL_Lagrange &&
62 m_base[1]->GetBasisType() == LibUtilities::eGLL_Lagrange);
63}

References Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_LaplacianMatrixOp() [1/2]

void Nektar::StdRegions::StdHexExp::v_LaplacianMatrixOp ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
const StdMatrixKey &  mkey 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2277 of file StdHexExp.cpp.

2280{
2281 StdHexExp::v_LaplacianMatrixOp_MatFree(inarray, outarray, mkey);
2282}
Nektar::StdRegions::StdExpansion3D::v_LaplacianMatrixOp_MatFree
void v_LaplacianMatrixOp_MatFree(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdRegions::StdMatrixKey &mkey) override
Definition: StdExpansion3D.cpp:281

References Nektar::StdRegions::StdExpansion3D::v_LaplacianMatrixOp_MatFree().

◆ v_LaplacianMatrixOp() [2/2]

void Nektar::StdRegions::StdHexExp::v_LaplacianMatrixOp ( const int  k1,
const int  k2,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
const StdMatrixKey &  mkey 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2284 of file StdHexExp.cpp.

2288{
2289 StdExpansion::LaplacianMatrixOp_MatFree(k1, k2, inarray, outarray, mkey);
2290}
Nektar::StdRegions::StdExpansion::LaplacianMatrixOp_MatFree
void LaplacianMatrixOp_MatFree(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
Definition: StdExpansion.h:1241

References Nektar::StdRegions::StdExpansion::LaplacianMatrixOp_MatFree().

◆ v_LocCollapsedToLocCoord()

void Nektar::StdRegions::StdHexExp::v_LocCollapsedToLocCoord ( const Array< OneD, const NekDouble > &  eta,
Array< OneD, NekDouble > &  xi 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 513 of file StdHexExp.cpp.

515{
516 xi[0] = eta[0];
517 xi[1] = eta[1];
518 xi[2] = eta[2];
519}

◆ v_LocCoordToLocCollapsed()

void Nektar::StdRegions::StdHexExp::v_LocCoordToLocCollapsed ( const Array< OneD, const NekDouble > &  xi,
Array< OneD, NekDouble > &  eta 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 505 of file StdHexExp.cpp.

507{
508 eta[0] = xi[0];
509 eta[1] = xi[1];
510 eta[2] = xi[2];
511}

◆ v_MassMatrixOp()

void Nektar::StdRegions::StdHexExp::v_MassMatrixOp ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
const StdMatrixKey &  mkey 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2270 of file StdHexExp.cpp.

2273{
2274 StdExpansion::MassMatrixOp_MatFree(inarray, outarray, mkey);
2275}
Nektar::StdRegions::StdExpansion::MassMatrixOp_MatFree
void MassMatrixOp_MatFree(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
Definition: StdExpansion.cpp:666

References Nektar::StdRegions::StdExpansion::MassMatrixOp_MatFree().

◆ v_MultiplyByStdQuadratureMetric()

void Nektar::StdRegions::StdHexExp::v_MultiplyByStdQuadratureMetric ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 2307 of file StdHexExp.cpp.

2310{
2311 int nquad0 = m_base[0]->GetNumPoints();
2312 int nquad1 = m_base[1]->GetNumPoints();
2313 int nquad2 = m_base[2]->GetNumPoints();
2314 int nq01 = nquad0 * nquad1;
2315 int nq12 = nquad1 * nquad2;
2316
2317 const Array<OneD, const NekDouble> &w0 = m_base[0]->GetW();
2318 const Array<OneD, const NekDouble> &w1 = m_base[1]->GetW();
2319 const Array<OneD, const NekDouble> &w2 = m_base[2]->GetW();
2320
2321 for (int i = 0; i < nq12; ++i)
2322 {
2323 Vmath::Vmul(nquad0, inarray.get() + i * nquad0, 1, w0.get(), 1,
2324 outarray.get() + i * nquad0, 1);
2325 }
2326
2327 for (int i = 0; i < nq12; ++i)
2328 {
2329 Vmath::Smul(nquad0, w1[i % nquad1], outarray.get() + i * nquad0, 1,
2330 outarray.get() + i * nquad0, 1);
2331 }
2332
2333 for (int i = 0; i < nquad2; ++i)
2334 {
2335 Vmath::Smul(nq01, w2[i], outarray.get() + i * nq01, 1,
2336 outarray.get() + i * nq01, 1);
2337 }
2338}

References Nektar::StdRegions::StdExpansion::m_base, Vmath::Smul(), and Vmath::Vmul().

◆ v_NumBndryCoeffs()

int Nektar::StdRegions::StdHexExp::v_NumBndryCoeffs ( ) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 610 of file StdHexExp.cpp.

611{
612 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
613 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
614 "BasisType is not a boundary interior form");
615 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
616 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
617 "BasisType is not a boundary interior form");
618 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
619 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
620 "BasisType is not a boundary interior form");
621
622 int nmodes0 = m_base[0]->GetNumModes();
623 int nmodes1 = m_base[1]->GetNumModes();
624 int nmodes2 = m_base[2]->GetNumModes();
625
626 return (2 * (nmodes0 * nmodes1 + nmodes0 * nmodes2 + nmodes1 * nmodes2) -
627 4 * (nmodes0 + nmodes1 + nmodes2) + 8);
628}

References ASSERTL1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_NumDGBndryCoeffs()

int Nektar::StdRegions::StdHexExp::v_NumDGBndryCoeffs ( ) const
overrideprotectedvirtual

Implements Nektar::StdRegions::StdExpansion.

Definition at line 630 of file StdHexExp.cpp.

631{
632 ASSERTL1(GetBasisType(0) == LibUtilities::eModified_A ||
633 GetBasisType(0) == LibUtilities::eGLL_Lagrange,
634 "BasisType is not a boundary interior form");
635 ASSERTL1(GetBasisType(1) == LibUtilities::eModified_A ||
636 GetBasisType(1) == LibUtilities::eGLL_Lagrange,
637 "BasisType is not a boundary interior form");
638 ASSERTL1(GetBasisType(2) == LibUtilities::eModified_A ||
639 GetBasisType(2) == LibUtilities::eGLL_Lagrange,
640 "BasisType is not a boundary interior form");
641
642 int nmodes0 = m_base[0]->GetNumModes();
643 int nmodes1 = m_base[1]->GetNumModes();
644 int nmodes2 = m_base[2]->GetNumModes();
645
646 return 2 * (nmodes0 * nmodes1 + nmodes0 * nmodes2 + nmodes1 * nmodes2);
647}

References ASSERTL1, Nektar::LibUtilities::eGLL_Lagrange, Nektar::LibUtilities::eModified_A, Nektar::StdRegions::StdExpansion::GetBasisType(), and Nektar::StdRegions::StdExpansion::m_base.

◆ v_PhysDeriv() [1/2]

void Nektar::StdRegions::StdHexExp::v_PhysDeriv ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  out_d0,
Array< OneD, NekDouble > &  out_d1,
Array< OneD, NekDouble > &  out_d2 
)
overrideprotectedvirtual

Differentiation Methods.

For Hexahedral region can use the PhysTensorDeriv function defined under StdExpansion. Following tenserproduct:

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 72 of file StdHexExp.cpp.

76{
77 StdExpansion3D::PhysTensorDeriv(inarray, out_d0, out_d1, out_d2);
78}
Nektar::StdRegions::StdExpansion3D::PhysTensorDeriv
void PhysTensorDeriv(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray_d1, Array< OneD, NekDouble > &outarray_d2, Array< OneD, NekDouble > &outarray_d3)
Calculate the 3D derivative in the local tensor/collapsed coordinate at the physical points.
Definition: StdExpansion3D.cpp:54

References Nektar::StdRegions::StdExpansion3D::PhysTensorDeriv().

Referenced by v_StdPhysDeriv().

◆ v_PhysDeriv() [2/2]

void Nektar::StdRegions::StdHexExp::v_PhysDeriv ( const int  dir,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual
Parameters
dirDirection in which to compute derivative. Valid values are 0, 1, 2.
inarrayInput array.
outarrayOutput array.

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 86 of file StdHexExp.cpp.

89{
90 switch (dir)
91 {
92 case 0:
93 {
94 PhysDeriv(inarray, outarray, NullNekDouble1DArray,
95 NullNekDouble1DArray);
96 }
97 break;
98 case 1:
99 {
100 PhysDeriv(inarray, NullNekDouble1DArray, outarray,
101 NullNekDouble1DArray);
102 }
103 break;
104 case 2:
105 {
106 PhysDeriv(inarray, NullNekDouble1DArray, NullNekDouble1DArray,
107 outarray);
108 }
109 break;
110 default:
111 {
112 ASSERTL1(false, "input dir is out of range");
113 }
114 break;
115 }
116}
Nektar::StdRegions::StdExpansion::PhysDeriv
void PhysDeriv(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray)
Definition: StdExpansion.h:849
Nektar::NullNekDouble1DArray
static Array< OneD, NekDouble > NullNekDouble1DArray
Definition: BasicUtils/SharedArray.hpp:927

References ASSERTL1, Nektar::NullNekDouble1DArray, and Nektar::StdRegions::StdExpansion::PhysDeriv().

◆ v_PhysEvaluate()

NekDouble Nektar::StdRegions::StdHexExp::v_PhysEvaluate ( const Array< OneD, NekDouble > &  coord,
const Array< OneD, const NekDouble > &  inarray,
std::array< NekDouble, 3 > &  firstOrderDerivs 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion3D.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 1113 of file StdHexExp.cpp.

1116{
1117 return BaryTensorDeriv(coord, inarray, firstOrderDerivs);
1118}
Nektar::StdRegions::StdExpansion3D::BaryTensorDeriv
NekDouble BaryTensorDeriv(const Array< OneD, NekDouble > &coord, const Array< OneD, const NekDouble > &inarray, std::array< NekDouble, 3 > &firstOrderDerivs)
Definition: StdExpansion3D.h:228

References Nektar::StdRegions::StdExpansion3D::BaryTensorDeriv().

◆ v_PhysEvaluateBasis()

NekDouble Nektar::StdRegions::StdHexExp::v_PhysEvaluateBasis ( const Array< OneD, const NekDouble > &  coords,
int  mode 
)
finalprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 569 of file StdHexExp.cpp.

571{
572 ASSERTL2(coords[0] > -1 - NekConstants::kNekZeroTol, "coord[0] < -1");
573 ASSERTL2(coords[0] < 1 + NekConstants::kNekZeroTol, "coord[0] > 1");
574 ASSERTL2(coords[1] > -1 - NekConstants::kNekZeroTol, "coord[1] < -1");
575 ASSERTL2(coords[1] < 1 + NekConstants::kNekZeroTol, "coord[1] > 1");
576 ASSERTL2(coords[2] > -1 - NekConstants::kNekZeroTol, "coord[2] < -1");
577 ASSERTL2(coords[2] < 1 + NekConstants::kNekZeroTol, "coord[2] > 1");
578
579 const int nm0 = m_base[0]->GetNumModes();
580 const int nm1 = m_base[1]->GetNumModes();
581 const int mode2 = mode / (nm0 * nm1);
582 const int mode1 = (mode - mode2 * nm0 * nm1) / nm0;
583 const int mode0 = (mode - mode2 * nm0 * nm1) % nm0;
584
585 return StdExpansion::BaryEvaluateBasis<0>(coords[0], mode0) *
586 StdExpansion::BaryEvaluateBasis<1>(coords[1], mode1) *
587 StdExpansion::BaryEvaluateBasis<2>(coords[2], mode2);
588}
Nektar::NekConstants::kNekZeroTol
static const NekDouble kNekZeroTol
Definition: NektarUnivConsts.hpp:49

References ASSERTL2, Nektar::NekConstants::kNekZeroTol, and Nektar::StdRegions::StdExpansion::m_base.

◆ v_StdPhysDeriv() [1/2]

void Nektar::StdRegions::StdHexExp::v_StdPhysDeriv ( const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  out_d0,
Array< OneD, NekDouble > &  out_d1,
Array< OneD, NekDouble > &  out_d2 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 118 of file StdHexExp.cpp.

122{
123 StdHexExp::v_PhysDeriv(inarray, out_d0, out_d1, out_d2);
124}
Nektar::StdRegions::StdHexExp::v_PhysDeriv
void v_PhysDeriv(const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) override
Differentiation Methods.
Definition: StdHexExp.cpp:72

References v_PhysDeriv().

◆ v_StdPhysDeriv() [2/2]

void Nektar::StdRegions::StdHexExp::v_StdPhysDeriv ( const int  dir,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Definition at line 126 of file StdHexExp.cpp.

129{
130 StdHexExp::v_PhysDeriv(dir, inarray, outarray);
131}

References v_PhysDeriv().

◆ v_SVVLaplacianFilter()

void Nektar::StdRegions::StdHexExp::v_SVVLaplacianFilter ( Array< OneD, NekDouble > &  array,
const StdMatrixKey &  mkey 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2340 of file StdHexExp.cpp.

2342{
2343 // Generate an orthonogal expansion
2344 int qa = m_base[0]->GetNumPoints();
2345 int qb = m_base[1]->GetNumPoints();
2346 int qc = m_base[2]->GetNumPoints();
2347 int nmodes_a = m_base[0]->GetNumModes();
2348 int nmodes_b = m_base[1]->GetNumModes();
2349 int nmodes_c = m_base[2]->GetNumModes();
2350 // Declare orthogonal basis.
2351 LibUtilities::PointsKey pa(qa, m_base[0]->GetPointsType());
2352 LibUtilities::PointsKey pb(qb, m_base[1]->GetPointsType());
2353 LibUtilities::PointsKey pc(qc, m_base[2]->GetPointsType());
2354
2355 LibUtilities::BasisKey Ba(LibUtilities::eOrtho_A, nmodes_a, pa);
2356 LibUtilities::BasisKey Bb(LibUtilities::eOrtho_A, nmodes_b, pb);
2357 LibUtilities::BasisKey Bc(LibUtilities::eOrtho_A, nmodes_c, pc);
2358 StdHexExp OrthoExp(Ba, Bb, Bc);
2359
2360 Array<OneD, NekDouble> orthocoeffs(OrthoExp.GetNcoeffs());
2361 int cnt = 0;
2362
2363 // project onto modal space.
2364 OrthoExp.FwdTrans(array, orthocoeffs);
2365
2366 if (mkey.ConstFactorExists(eFactorSVVPowerKerDiffCoeff))
2367 {
2368 // Rodrigo's power kernel
2369 NekDouble cutoff = mkey.GetConstFactor(eFactorSVVCutoffRatio);
2370 NekDouble SvvDiffCoeff =
2371 mkey.GetConstFactor(eFactorSVVPowerKerDiffCoeff) *
2372 mkey.GetConstFactor(eFactorSVVDiffCoeff);
2373
2374 for (int i = 0; i < nmodes_a; ++i)
2375 {
2376 for (int j = 0; j < nmodes_b; ++j)
2377 {
2378 NekDouble fac1 = std::max(
2379 pow((1.0 * i) / (nmodes_a - 1), cutoff * nmodes_a),
2380 pow((1.0 * j) / (nmodes_b - 1), cutoff * nmodes_b));
2381
2382 for (int k = 0; k < nmodes_c; ++k)
2383 {
2384 NekDouble fac =
2385 std::max(fac1, pow((1.0 * k) / (nmodes_c - 1),
2386 cutoff * nmodes_c));
2387
2388 orthocoeffs[cnt] *= SvvDiffCoeff * fac;
2389 cnt++;
2390 }
2391 }
2392 }
2393 }
2394 else if (mkey.ConstFactorExists(
2395 eFactorSVVDGKerDiffCoeff)) // Rodrigo/Mansoor's DG Kernel
2396 {
2397 NekDouble SvvDiffCoeff = mkey.GetConstFactor(eFactorSVVDGKerDiffCoeff) *
2398 mkey.GetConstFactor(eFactorSVVDiffCoeff);
2399
2400 int max_abc = max(nmodes_a - kSVVDGFiltermodesmin,
2401 nmodes_b - kSVVDGFiltermodesmin);
2402 max_abc = max(max_abc, nmodes_c - kSVVDGFiltermodesmin);
2403 // clamp max_abc
2404 max_abc = max(max_abc, 0);
2405 max_abc = min(max_abc, kSVVDGFiltermodesmax - kSVVDGFiltermodesmin);
2406
2407 for (int i = 0; i < nmodes_a; ++i)
2408 {
2409 for (int j = 0; j < nmodes_b; ++j)
2410 {
2411 int maxij = max(i, j);
2412
2413 for (int k = 0; k < nmodes_c; ++k)
2414 {
2415 int maxijk = max(maxij, k);
2416 maxijk = min(maxijk, kSVVDGFiltermodesmax - 1);
2417
2418 orthocoeffs[cnt] *=
2419 SvvDiffCoeff * kSVVDGFilter[max_abc][maxijk];
2420 cnt++;
2421 }
2422 }
2423 }
2424 }
2425 else
2426 {
2427
2428 int cutoff = (int)(mkey.GetConstFactor(eFactorSVVCutoffRatio) *
2429 min(nmodes_a, nmodes_b));
2430 NekDouble SvvDiffCoeff = mkey.GetConstFactor(eFactorSVVDiffCoeff);
2431 // Filter just trilinear space
2432 int nmodes = max(nmodes_a, nmodes_b);
2433 nmodes = max(nmodes, nmodes_c);
2434
2435 Array<OneD, NekDouble> fac(nmodes, 1.0);
2436 for (int j = cutoff; j < nmodes; ++j)
2437 {
2438 fac[j] = fabs((j - nmodes) / ((NekDouble)(j - cutoff + 1.0)));
2439 fac[j] *= fac[j]; // added this line to conform with equation
2440 }
2441
2442 for (int i = 0; i < nmodes_a; ++i)
2443 {
2444 for (int j = 0; j < nmodes_b; ++j)
2445 {
2446 for (int k = 0; k < nmodes_c; ++k)
2447 {
2448 if ((i >= cutoff) || (j >= cutoff) || (k >= cutoff))
2449 {
2450 orthocoeffs[i * nmodes_a * nmodes_b + j * nmodes_c +
2451 k] *=
2452 (SvvDiffCoeff * exp(-(fac[i] + fac[j] + fac[k])));
2453 }
2454 else
2455 {
2456 orthocoeffs[i * nmodes_a * nmodes_b + j * nmodes_c +
2457 k] *= 0.0;
2458 }
2459 }
2460 }
2461 }
2462 }
2463
2464 // backward transform to physical space
2465 OrthoExp.BwdTrans(orthocoeffs, array);
2466}
Nektar::StdRegions::kSVVDGFiltermodesmin
const int kSVVDGFiltermodesmin
Definition: StdRegions.hpp:500
Nektar::StdRegions::kSVVDGFiltermodesmax
const int kSVVDGFiltermodesmax
Definition: StdRegions.hpp:501
Nektar::StdRegions::kSVVDGFilter
const NekDouble kSVVDGFilter[9][11]
Definition: StdRegions.hpp:503

References Nektar::StdRegions::StdExpansion::BwdTrans(), Nektar::StdRegions::StdMatrixKey::ConstFactorExists(), Nektar::StdRegions::eFactorSVVCutoffRatio, Nektar::StdRegions::eFactorSVVDGKerDiffCoeff, Nektar::StdRegions::eFactorSVVDiffCoeff, Nektar::StdRegions::eFactorSVVPowerKerDiffCoeff, Nektar::LibUtilities::eOrtho_A, Nektar::StdRegions::StdExpansion::FwdTrans(), Nektar::StdRegions::StdMatrixKey::GetConstFactor(), Nektar::StdRegions::StdExpansion::GetNcoeffs(), Nektar::StdRegions::StdExpansion::GetPointsType(), Nektar::StdRegions::kSVVDGFilter, Nektar::StdRegions::kSVVDGFiltermodesmax, Nektar::StdRegions::kSVVDGFiltermodesmin, and Nektar::StdRegions::StdExpansion::m_base.

◆ v_WeakDerivMatrixOp()

void Nektar::StdRegions::StdHexExp::v_WeakDerivMatrixOp ( const int  i,
const Array< OneD, const NekDouble > &  inarray,
Array< OneD, NekDouble > &  outarray,
const StdMatrixKey &  mkey 
)
overrideprotectedvirtual

Reimplemented from Nektar::StdRegions::StdExpansion.

Reimplemented in Nektar::LocalRegions::HexExp.

Definition at line 2292 of file StdHexExp.cpp.

2296{
2297 StdExpansion::WeakDerivMatrixOp_MatFree(i, inarray, outarray, mkey);
2298}
Nektar::StdRegions::StdExpansion::WeakDerivMatrixOp_MatFree
void WeakDerivMatrixOp_MatFree(const int i, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const StdMatrixKey &mkey)
Definition: StdExpansion.cpp:825

References Nektar::StdRegions::StdExpansion::WeakDerivMatrixOp_MatFree().

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