StdNodalTriExp.cpp

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///////////////////////////////////////////////////////////////////////////////
//
// File StdNodalTriExp.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// License for the specific language governing rights and limitations under
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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// DEALINGS IN THE SOFTWARE.
// 
// Description: Nodal triangle routines built upon StdExpansion2D
//
///////////////////////////////////////////////////////////////////////////////

#include <StdRegions/StdNodalTriExp.h>
#include <LibUtilities/Foundations/ManagerAccess.h>  // for PointsManager, etc

namespace Nektar
{
    namespace StdRegions
    {
        StdNodalTriExp::StdNodalTriExp():
            StdTriExp(),
            m_nodalPointsKey()
        {
        }

        StdNodalTriExp::StdNodalTriExp(
            const LibUtilities::BasisKey &Ba, 
            const LibUtilities::BasisKey &Bb, 
            LibUtilities::PointsType Ntype):
            StdExpansion  (LibUtilities::StdTriData::getNumberOfCoefficients(
                               Ba.GetNumModes(),
                               Bb.GetNumModes()),
                           2,Ba,Bb),
            StdExpansion2D(LibUtilities::StdTriData::getNumberOfCoefficients(
                               Ba.GetNumModes(),
                               Bb.GetNumModes()),
                           Ba,Bb),
            StdTriExp     (Ba,Bb),
            m_nodalPointsKey(Ba.GetNumModes(),Ntype)
        {
            ASSERTL0(m_base[0]->GetNumModes() == m_base[1]->GetNumModes(),
                     "Nodal basis initiated with different orders in the a "
                     "and b directions");   
        }

        StdNodalTriExp::StdNodalTriExp(const StdNodalTriExp &T):
            StdExpansion(T),
            StdExpansion2D(T),
            StdTriExp(T),
            m_nodalPointsKey(T.m_nodalPointsKey)
        {
        }

        StdNodalTriExp::~StdNodalTriExp()
        { 
        }
        
        bool StdNodalTriExp::v_IsNodalNonTensorialExp()
        {
            return true;
        }
        
        //-------------------------------
        // Nodal basis specific routines
        //-------------------------------
        
        void StdNodalTriExp::NodalToModal(
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray)
        {
            StdMatrixKey   Nkey(eInvNBasisTrans, DetShapeType(), *this,
                                NullConstFactorMap, NullVarCoeffMap,
                                m_nodalPointsKey.GetPointsType());
            DNekMatSharedPtr  inv_vdm = GetStdMatrix(Nkey);

            NekVector<NekDouble> nodal(m_ncoeffs,inarray,eWrapper);
            NekVector<NekDouble> modal(m_ncoeffs,outarray,eWrapper);
            modal = (*inv_vdm) * nodal;
        }

        // Operate with transpose of NodalToModal transformation
        void StdNodalTriExp::NodalToModalTranspose(
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray)
        {
            StdMatrixKey   Nkey(eInvNBasisTrans, DetShapeType(), *this,
                                NullConstFactorMap, NullVarCoeffMap,
                                m_nodalPointsKey.GetPointsType());
            DNekMatSharedPtr  inv_vdm = GetStdMatrix(Nkey);

            NekVector<NekDouble> nodal(m_ncoeffs,inarray,eCopy);
            NekVector<NekDouble> modal(m_ncoeffs,outarray,eWrapper);
            modal = Transpose(*inv_vdm) * nodal;
        }

        void StdNodalTriExp::ModalToNodal(
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray)
        {
            StdMatrixKey      Nkey(eNBasisTrans, DetShapeType(), *this,
                                    NullConstFactorMap, NullVarCoeffMap,
                                    m_nodalPointsKey.GetPointsType());
            DNekMatSharedPtr  vdm = GetStdMatrix(Nkey);

            // Multiply out matrix
            NekVector<NekDouble> modal(m_ncoeffs,inarray,eWrapper);
            NekVector<NekDouble> nodal(m_ncoeffs,outarray,eWrapper);
            nodal = (*vdm)*modal;
        }

        void StdNodalTriExp::GetNodalPoints(
            Array<OneD, const NekDouble> &x, 
            Array<OneD, const NekDouble> &y)
        {
            LibUtilities::PointsManager()[m_nodalPointsKey]->GetPoints(x,y);
        }

        DNekMatSharedPtr StdNodalTriExp::GenNBasisTransMatrix()
        {
            int             i,j;
            Array<OneD, const NekDouble>  r, s; 
            Array<OneD, NekDouble> c(2);
            DNekMatSharedPtr Mat;

            Mat = MemoryManager<DNekMat>::AllocateSharedPtr(
                m_ncoeffs, m_ncoeffs);
            GetNodalPoints(r,s);

            //Store the values of m_phys in a temporary array
            int nqtot = GetTotPoints();
            Array<OneD,NekDouble> phys(nqtot);

            for(i = 0; i < m_ncoeffs; ++i)
            {
                // fill physical space with mode i
                StdTriExp::v_FillMode(i,phys);

                // interpolate mode i to the Nodal points 'j' and
                // store in outarray
                for(j = 0; j < m_ncoeffs; ++j)
                {
                    c[0] = r[j];
                    c[1] = s[j];
                    (*Mat)(j,i) = StdTriExp::v_PhysEvaluate(c,phys);
                }
            }
            return Mat;
        }


        //---------------------------------------
        // Transforms
        //---------------------------------------
        
        void StdNodalTriExp::v_BwdTrans(
            const Array<OneD, const NekDouble>& inarray,
                  Array<OneD,       NekDouble>& outarray)
        {
            v_BwdTrans_SumFac(inarray,outarray);
        }

        void StdNodalTriExp::v_BwdTrans_SumFac(
            const Array<OneD, const NekDouble>& inarray,
                  Array<OneD,       NekDouble>& outarray)
        {
            Array<OneD, NekDouble> tmp(m_ncoeffs);
            NodalToModal(inarray,tmp);
            StdTriExp::v_BwdTrans_SumFac(tmp,outarray);
        }

        void StdNodalTriExp::v_FwdTrans(
            const Array<OneD, const NekDouble>& inarray,
                  Array<OneD,       NekDouble>& outarray)
        {
            v_IProductWRTBase(inarray,outarray);
            
            // get Mass matrix inverse
            StdMatrixKey      masskey(eInvMass, DetShapeType(), *this,
                                      NullConstFactorMap, NullVarCoeffMap,
                                      m_nodalPointsKey.GetPointsType());
            DNekMatSharedPtr  matsys = GetStdMatrix(masskey);

            // copy inarray in case inarray == outarray
            NekVector<NekDouble> in(m_ncoeffs,outarray,eCopy);
            NekVector<NekDouble> out(m_ncoeffs,outarray,eWrapper);
            
            out = (*matsys)*in;
        }


        //---------------------------------------
        // Inner product functions
        //---------------------------------------
        
        void StdNodalTriExp::v_IProductWRTBase(
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray)
        {
            v_IProductWRTBase_SumFac(inarray,outarray);
        }
        
        void StdNodalTriExp::v_IProductWRTBase_SumFac(
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray,
            bool                                multiplybyweights)
        {
            StdTriExp::v_IProductWRTBase_SumFac(inarray,outarray,multiplybyweights);
            NodalToModalTranspose(outarray,outarray);    
        }

        void StdNodalTriExp::v_IProductWRTDerivBase(
            const int                           dir,
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray)
        {
            v_IProductWRTDerivBase_SumFac(dir,inarray,outarray);
        }
        
        void StdNodalTriExp::v_IProductWRTDerivBase_SumFac(
            const int                           dir, 
            const Array<OneD, const NekDouble>& inarray, 
                  Array<OneD,       NekDouble>& outarray)
        {
            StdTriExp::v_IProductWRTDerivBase_SumFac(dir,inarray,outarray);
            NodalToModalTranspose(outarray,outarray);
        }
        
        //---------------------------------------
        // Evaluation functions
        //---------------------------------------
        
        void StdNodalTriExp::v_FillMode(
            const int               mode, 
            Array<OneD, NekDouble> &outarray)
        {
            ASSERTL2(mode >= m_ncoeffs, 
                "calling argument mode is larger than total expansion order");

            Vmath::Zero(m_ncoeffs, outarray, 1);
            outarray[mode] = 1.0;
            v_BwdTrans(outarray,outarray);
        }


        //---------------------------
        // Helper functions
        //---------------------------

        int StdNodalTriExp::v_NumBndryCoeffs() const
        {
            return 3 + (GetBasisNumModes(0)-2) + 2*(GetBasisNumModes(1)-2);
        } 

        //--------------------------
        // Mappings
        //--------------------------

        void StdNodalTriExp::v_GetEdgeToElementMap(
            const int                  eid,
            const Orientation      edgeOrient,
            Array<OneD, unsigned int> &maparray,
            Array<OneD,          int> &signarray,
            int                        P)
        {
            ASSERTL0(eid >= 0 && eid <= 2,
                     "Local Edge ID must be between 0 and 2"); 

            ASSERTL0(P == -1, "Nodal triangle not set up to deal with variable"
                              "polynomial order.");
            const int nEdgeCoeffs = GetEdgeNcoeffs(eid);
            
            if (maparray.num_elements() != nEdgeCoeffs)
            {
                maparray = Array<OneD, unsigned int>(nEdgeCoeffs);
            }

            if (signarray.num_elements() != nEdgeCoeffs)
            {
                signarray = Array<OneD, int>(nEdgeCoeffs,1);
            }
            else
            {
                fill(signarray.get(), signarray.get()+nEdgeCoeffs, 1);
            }
            
            maparray[0] = eid;
            maparray[1] = eid == 2 ? 0 : eid+1;
            for (int i = 2; i < nEdgeCoeffs; i++)
            {
                maparray[i] = eid*(nEdgeCoeffs-2)+1+i; 
            }  

            if (edgeOrient == eBackwards)
            {
                reverse(maparray.get(), maparray.get()+nEdgeCoeffs);
            }
        }

        int StdNodalTriExp::v_GetVertexMap(const int localVertexId,
                                           bool useCoeffPacking)
        {
            ASSERTL0(localVertexId >= 0 && localVertexId <= 2,
                     "Local Vertex ID must be between 0 and 2");                
            return localVertexId;
        }

        void StdNodalTriExp::v_GetEdgeInteriorMap(
            const int                  eid,
            const Orientation      edgeOrient,
            Array<OneD, unsigned int> &maparray,
            Array<OneD,          int> &signarray)
        {
            ASSERTL0(eid >= 0 && eid <= 2,
                     "Local Edge ID must be between 0 and 2"); 
            
            const int nEdgeIntCoeffs = GetEdgeNcoeffs(eid)-2;
            
            if (maparray.num_elements() != nEdgeIntCoeffs)
            {
                maparray = Array<OneD, unsigned int>(nEdgeIntCoeffs);
            }

            if (signarray.num_elements() != nEdgeIntCoeffs)
            {
                signarray = Array<OneD, int>(nEdgeIntCoeffs,1);
            }
            else
            {
                fill(signarray.get(), signarray.get()+nEdgeIntCoeffs, 1);
            }
            
            for (int i = 0; i < nEdgeIntCoeffs; i++)
            {
                maparray[i] = eid*nEdgeIntCoeffs+3+i; 
            }  

            if (edgeOrient == eBackwards)
            {
                reverse(maparray.get(), maparray.get()+nEdgeIntCoeffs);
            }
        }

        void StdNodalTriExp::v_GetInteriorMap(
            Array<OneD, unsigned int>& outarray)
        {
            unsigned int i;
            if (outarray.num_elements() != GetNcoeffs()-NumBndryCoeffs())
            {
                outarray = Array<OneD, unsigned int>(
                    GetNcoeffs()-NumBndryCoeffs());
            }

            for (i = NumBndryCoeffs(); i < GetNcoeffs(); i++)
            {
                outarray[i-NumBndryCoeffs()] = i;
            }
        }
        
        void StdNodalTriExp::v_GetBoundaryMap(
            Array<OneD, unsigned int>& outarray)
        {
            unsigned int i;
            if (outarray.num_elements()!=NumBndryCoeffs())
            {
                outarray = Array<OneD, unsigned int>(NumBndryCoeffs());
            }
            
            for (i = 0; i < NumBndryCoeffs(); i++)
            {
                outarray[i] = i;
            }
        }


        //---------------------------------------
        // Wrapper functions
        //---------------------------------------
        
        DNekMatSharedPtr StdNodalTriExp::v_GenMatrix(const StdMatrixKey &mkey)
        {
            DNekMatSharedPtr Mat;
            
            switch(mkey.GetMatrixType())
            {
                case eNBasisTrans:
                    Mat = GenNBasisTransMatrix();
                    break;
                default:
                    Mat = StdExpansion::CreateGeneralMatrix(mkey);
                    break;
            }
            
            return Mat;
        }
        
        DNekMatSharedPtr StdNodalTriExp::v_CreateStdMatrix(
            const StdMatrixKey &mkey)
        {
            return StdNodalTriExp::v_GenMatrix(mkey);
        }


        //---------------------------------------
        // Operator evaluation functions
        //---------------------------------------

        void StdNodalTriExp::v_MassMatrixOp(
            const Array<OneD, const NekDouble> &inarray,
                  Array<OneD,       NekDouble> &outarray,
            const StdMatrixKey                 &mkey)
        {              
            StdExpansion::MassMatrixOp_MatFree(inarray,outarray,mkey);
        }

        void StdNodalTriExp::v_LaplacianMatrixOp(
            const Array<OneD, const NekDouble> &inarray,
                  Array<OneD,       NekDouble> &outarray,
            const StdMatrixKey                 &mkey)
        {                
            StdExpansion::LaplacianMatrixOp_MatFree_GenericImpl(
                inarray,outarray,mkey);
        }

        void StdNodalTriExp::v_LaplacianMatrixOp(
            const int                           k1,
            const int                           k2,
            const Array<OneD, const NekDouble> &inarray,
                  Array<OneD,       NekDouble> &outarray,
            const StdMatrixKey                 &mkey)
            
        {           
            StdExpansion::LaplacianMatrixOp_MatFree(
                k1,k2,inarray,outarray,mkey);
        }

        void StdNodalTriExp::v_WeakDerivMatrixOp(
            const int                           i,
            const Array<OneD, const NekDouble> &inarray,
                  Array<OneD,       NekDouble> &outarray,
            const StdMatrixKey                 &mkey)
        {
            StdExpansion::WeakDerivMatrixOp_MatFree(i,inarray,outarray,mkey);
        }
        
        void StdNodalTriExp::v_HelmholtzMatrixOp(
            const Array<OneD, const NekDouble> &inarray,
                  Array<OneD,       NekDouble> &outarray,
            const StdMatrixKey                 &mkey)
        {
            StdExpansion::HelmholtzMatrixOp_MatFree_GenericImpl(
                inarray,outarray,mkey);
        }       
        

        //---------------------------------------
        // Private helper functions
        //---------------------------------------

    } // end of namespace
} // end of namespace