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Nektar::UnsteadyDiffusion Class Reference

#include <UnsteadyDiffusion.h>

Inheritance diagram for Nektar::UnsteadyDiffusion:
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Collaboration diagram for Nektar::UnsteadyDiffusion:
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Public Member Functions

virtual ~UnsteadyDiffusion ()
 Destructor. More...
 
- Public Member Functions inherited from Nektar::SolverUtils::UnsteadySystem
virtual SOLVER_UTILS_EXPORT ~UnsteadySystem ()
 Destructor. More...
 
SOLVER_UTILS_EXPORT NekDouble GetTimeStep (const Array< OneD, const Array< OneD, NekDouble > > &inarray)
 Calculate the larger time-step mantaining the problem stable. More...
 
- Public Member Functions inherited from Nektar::SolverUtils::EquationSystem
virtual SOLVER_UTILS_EXPORT ~EquationSystem ()
 Destructor. More...
 
SOLVER_UTILS_EXPORT void SetUpTraceNormals (void)
 
SOLVER_UTILS_EXPORT void InitObject ()
 Initialises the members of this object. More...
 
SOLVER_UTILS_EXPORT void DoInitialise ()
 Perform any initialisation necessary before solving the problem. More...
 
SOLVER_UTILS_EXPORT void DoSolve ()
 Solve the problem. More...
 
SOLVER_UTILS_EXPORT void TransCoeffToPhys ()
 Transform from coefficient to physical space. More...
 
SOLVER_UTILS_EXPORT void TransPhysToCoeff ()
 Transform from physical to coefficient space. More...
 
SOLVER_UTILS_EXPORT void Output ()
 Perform output operations after solve. More...
 
SOLVER_UTILS_EXPORT NekDouble LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
 Linf error computation. More...
 
SOLVER_UTILS_EXPORT std::string GetSessionName ()
 Get Session name. More...
 
template<class T >
boost::shared_ptr< T > as ()
 
SOLVER_UTILS_EXPORT void ResetSessionName (std::string newname)
 Reset Session name. More...
 
SOLVER_UTILS_EXPORT
LibUtilities::SessionReaderSharedPtr 
GetSession ()
 Get Session name. More...
 
SOLVER_UTILS_EXPORT
MultiRegions::ExpListSharedPtr 
GetPressure ()
 Get pressure field if available. More...
 
SOLVER_UTILS_EXPORT void PrintSummary (std::ostream &out)
 Print a summary of parameters and solver characteristics. More...
 
SOLVER_UTILS_EXPORT void SetLambda (NekDouble lambda)
 Set parameter m_lambda. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (Array< OneD, Array< OneD, NekDouble > > &pArray, std::string pFunctionName, const NekDouble pTime=0.0, const int domain=0)
 Evaluates a function as specified in the session file. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (std::vector< std::string > pFieldNames, Array< OneD, Array< OneD, NekDouble > > &pFields, const std::string &pName, const NekDouble &pTime=0.0, const int domain=0)
 Populate given fields with the function from session. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (std::vector< std::string > pFieldNames, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const std::string &pName, const NekDouble &pTime=0.0, const int domain=0)
 Populate given fields with the function from session. More...
 
SOLVER_UTILS_EXPORT void EvaluateFunction (std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)
 
SOLVER_UTILS_EXPORT std::string DescribeFunction (std::string pFieldName, const std::string &pFunctionName, const int domain)
 Provide a description of a function for a given field name. More...
 
SOLVER_UTILS_EXPORT void InitialiseBaseFlow (Array< OneD, Array< OneD, NekDouble > > &base)
 Perform initialisation of the base flow. More...
 
SOLVER_UTILS_EXPORT void SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
 Initialise the data in the dependent fields. More...
 
SOLVER_UTILS_EXPORT void EvaluateExactSolution (int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
 Evaluates an exact solution. More...
 
SOLVER_UTILS_EXPORT NekDouble L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln, bool Normalised=false)
 Compute the L2 error between fields and a given exact solution. More...
 
SOLVER_UTILS_EXPORT NekDouble L2Error (unsigned int field, bool Normalised=false)
 Compute the L2 error of the fields. More...
 
SOLVER_UTILS_EXPORT Array
< OneD, NekDouble
ErrorExtraPoints (unsigned int field)
 Compute error (L2 and L_inf) over an larger set of quadrature points return [L2 Linf]. More...
 
SOLVER_UTILS_EXPORT void WeakAdvectionGreensDivergenceForm (const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)
 Compute the inner product $ (\nabla \phi \cdot F) $. More...
 
SOLVER_UTILS_EXPORT void WeakAdvectionDivergenceForm (const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)
 Compute the inner product $ (\phi, \nabla \cdot F) $. More...
 
SOLVER_UTILS_EXPORT void WeakAdvectionNonConservativeForm (const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, bool UseContCoeffs=false)
 Compute the inner product $ (\phi, V\cdot \nabla u) $. More...
 
f SOLVER_UTILS_EXPORT void AdvectionNonConservativeForm (const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wk=NullNekDouble1DArray)
 Compute the non-conservative advection. More...
 
SOLVER_UTILS_EXPORT void WeakDGAdvection (const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false, int nvariables=0)
 Calculate the weak discontinuous Galerkin advection. More...
 
SOLVER_UTILS_EXPORT void WeakDGDiffusion (const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false)
 Calculate weak DG Diffusion in the LDG form. More...
 
SOLVER_UTILS_EXPORT void Checkpoint_Output (const int n)
 Write checkpoint file of m_fields. More...
 
SOLVER_UTILS_EXPORT void Checkpoint_Output (const int n, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
 Write checkpoint file of custom data fields. More...
 
SOLVER_UTILS_EXPORT void Checkpoint_BaseFlow (const int n)
 Write base flow file of m_fields. More...
 
SOLVER_UTILS_EXPORT void WriteFld (const std::string &outname)
 Write field data to the given filename. More...
 
SOLVER_UTILS_EXPORT void WriteFld (const std::string &outname, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
 Write input fields to the given filename. More...
 
SOLVER_UTILS_EXPORT void ImportFld (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
 Input field data from the given file. More...
 
SOLVER_UTILS_EXPORT void ImportFldToMultiDomains (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const int ndomains)
 Input field data from the given file to multiple domains. More...
 
SOLVER_UTILS_EXPORT void ImportFld (const std::string &infile, std::vector< std::string > &fieldStr, Array< OneD, Array< OneD, NekDouble > > &coeffs)
 Output a field. Input field data into array from the given file. More...
 
SOLVER_UTILS_EXPORT void ImportFld (const std::string &infile, MultiRegions::ExpListSharedPtr &pField, std::string &pFieldName)
 Output a field. Input field data into ExpList from the given file. More...
 
SOLVER_UTILS_EXPORT void ScanForHistoryPoints ()
 Builds map of which element holds each history point. More...
 
SOLVER_UTILS_EXPORT void WriteHistoryData (std::ostream &out)
 Probe each history point and write to file. More...
 
SOLVER_UTILS_EXPORT void SessionSummary (SummaryList &vSummary)
 Write out a session summary. More...
 
SOLVER_UTILS_EXPORT Array
< OneD,
MultiRegions::ExpListSharedPtr > & 
UpdateFields ()
 
SOLVER_UTILS_EXPORT
LibUtilities::FieldMetaDataMap
UpdateFieldMetaDataMap ()
 Get hold of FieldInfoMap so it can be updated. More...
 
SOLVER_UTILS_EXPORT NekDouble GetFinalTime ()
 Return final time. More...
 
SOLVER_UTILS_EXPORT int GetNcoeffs ()
 
SOLVER_UTILS_EXPORT int GetNcoeffs (const int eid)
 
SOLVER_UTILS_EXPORT int GetNumExpModes ()
 
SOLVER_UTILS_EXPORT const
Array< OneD, int > 
GetNumExpModesPerExp ()
 
SOLVER_UTILS_EXPORT int GetNvariables ()
 
SOLVER_UTILS_EXPORT const
std::string 
GetVariable (unsigned int i)
 
SOLVER_UTILS_EXPORT int GetTraceTotPoints ()
 
SOLVER_UTILS_EXPORT int GetTraceNpoints ()
 
SOLVER_UTILS_EXPORT int GetExpSize ()
 
SOLVER_UTILS_EXPORT int GetPhys_Offset (int n)
 
SOLVER_UTILS_EXPORT int GetCoeff_Offset (int n)
 
SOLVER_UTILS_EXPORT int GetTotPoints ()
 
SOLVER_UTILS_EXPORT int GetTotPoints (int n)
 
SOLVER_UTILS_EXPORT int GetNpoints ()
 
SOLVER_UTILS_EXPORT int GetNumElmVelocity ()
 
SOLVER_UTILS_EXPORT int GetSteps ()
 
SOLVER_UTILS_EXPORT NekDouble GetTimeStep ()
 
SOLVER_UTILS_EXPORT void CopyFromPhysField (const int i, Array< OneD, NekDouble > &output)
 
SOLVER_UTILS_EXPORT void CopyToPhysField (const int i, Array< OneD, NekDouble > &output)
 
SOLVER_UTILS_EXPORT void SetSteps (const int steps)
 
SOLVER_UTILS_EXPORT void ZeroPhysFields ()
 
SOLVER_UTILS_EXPORT void FwdTransFields ()
 
SOLVER_UTILS_EXPORT void GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)
 
SOLVER_UTILS_EXPORT void GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &fluxX, Array< OneD, Array< OneD, NekDouble > > &fluxY)
 
SOLVER_UTILS_EXPORT void GetFluxVector (const int i, const int j, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)
 
SOLVER_UTILS_EXPORT void NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)
 
SOLVER_UTILS_EXPORT void NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)
 
SOLVER_UTILS_EXPORT void NumFluxforScalar (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)
 
SOLVER_UTILS_EXPORT void NumFluxforVector (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)
 
SOLVER_UTILS_EXPORT void SetModifiedBasis (const bool modbasis)
 
SOLVER_UTILS_EXPORT int NoCaseStringCompare (const string &s1, const string &s2)
 Perform a case-insensitive string comparison. More...
 
SOLVER_UTILS_EXPORT int GetCheckpointNumber ()
 
SOLVER_UTILS_EXPORT void SetCheckpointNumber (int num)
 
SOLVER_UTILS_EXPORT int GetCheckpointSteps ()
 
SOLVER_UTILS_EXPORT void SetCheckpointSteps (int num)
 
SOLVER_UTILS_EXPORT void SetTime (const NekDouble time)
 
SOLVER_UTILS_EXPORT void SetInitialStep (const int step)
 
SOLVER_UTILS_EXPORT void SetBoundaryConditions (NekDouble time)
 Evaluates the boundary conditions at the given time. More...
 
virtual SOLVER_UTILS_EXPORT bool v_NegatedOp ()
 Virtual function to identify if operator is negated in DoSolve. More...
 

Static Public Member Functions

static EquationSystemSharedPtr create (const LibUtilities::SessionReaderSharedPtr &pSession)
 Creates an instance of this class. More...
 

Static Public Attributes

static std::string className = GetEquationSystemFactory().RegisterCreatorFunction("UnsteadyDiffusion", UnsteadyDiffusion::create)
 Name of class. More...
 

Protected Member Functions

virtual void v_GenerateSummary (SummaryList &s)
 Print a summary of time stepping parameters. More...
 
 UnsteadyDiffusion (const LibUtilities::SessionReaderSharedPtr &pSession)
 
virtual void v_InitObject ()
 Initialisation object for the unsteady diffusion problem. More...
 
void GetFluxVector (const int i, const int j, const Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &derivatives, Array< OneD, Array< OneD, NekDouble > > &flux)
 Return the flux vector for the unsteady diffusion problem. More...
 
void DoOdeRhs (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
 
void DoOdeProjection (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
 Compute the projection for the unsteady diffusion problem. More...
 
virtual void DoImplicitSolve (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, NekDouble time, NekDouble lambda)
 Implicit solution of the unsteady diffusion problem. More...
 
- Protected Member Functions inherited from Nektar::SolverUtils::UnsteadySystem
SOLVER_UTILS_EXPORT UnsteadySystem (const LibUtilities::SessionReaderSharedPtr &pSession)
 Initialises UnsteadySystem class members. More...
 
SOLVER_UTILS_EXPORT NekDouble MaxTimeStepEstimator ()
 Get the maximum timestep estimator for cfl control. More...
 
virtual SOLVER_UTILS_EXPORT void v_DoSolve ()
 Solves an unsteady problem. More...
 
virtual SOLVER_UTILS_EXPORT void v_DoInitialise ()
 Sets up initial conditions. More...
 
virtual SOLVER_UTILS_EXPORT void v_AppendOutput1D (Array< OneD, Array< OneD, NekDouble > > &solution1D)
 Print the solution at each solution point in a txt file. More...
 
virtual SOLVER_UTILS_EXPORT void v_NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)
 
virtual SOLVER_UTILS_EXPORT void v_NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)
 
virtual SOLVER_UTILS_EXPORT void v_NumFluxforScalar (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)
 
virtual SOLVER_UTILS_EXPORT void v_NumFluxforVector (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)
 
virtual SOLVER_UTILS_EXPORT
NekDouble 
v_GetTimeStep (const Array< OneD, const Array< OneD, NekDouble > > &inarray)
 Return the timestep to be used for the next step in the time-marching loop. More...
 
virtual SOLVER_UTILS_EXPORT bool v_PreIntegrate (int step)
 
virtual SOLVER_UTILS_EXPORT bool v_PostIntegrate (int step)
 
virtual SOLVER_UTILS_EXPORT bool v_SteadyStateCheck (int step)
 
SOLVER_UTILS_EXPORT void CheckForRestartTime (NekDouble &time)
 
SOLVER_UTILS_EXPORT void SVVVarDiffCoeff (const Array< OneD, Array< OneD, NekDouble > > vel, StdRegions::VarCoeffMap &varCoeffMap)
 Evaluate the SVV diffusion coefficient according to Moura's paper where it should proportional to h time velocity. More...
 
- Protected Member Functions inherited from Nektar::SolverUtils::EquationSystem
SOLVER_UTILS_EXPORT EquationSystem (const LibUtilities::SessionReaderSharedPtr &pSession)
 Initialises EquationSystem class members. More...
 
int nocase_cmp (const string &s1, const string &s2)
 
virtual SOLVER_UTILS_EXPORT
NekDouble 
v_LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
 Virtual function for the L_inf error computation between fields and a given exact solution. More...
 
virtual SOLVER_UTILS_EXPORT
NekDouble 
v_L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false)
 Virtual function for the L_2 error computation between fields and a given exact solution. More...
 
virtual SOLVER_UTILS_EXPORT void v_TransCoeffToPhys ()
 Virtual function for transformation to physical space. More...
 
virtual SOLVER_UTILS_EXPORT void v_TransPhysToCoeff ()
 Virtual function for transformation to coefficient space. More...
 
virtual SOLVER_UTILS_EXPORT void v_SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
 
virtual SOLVER_UTILS_EXPORT void v_EvaluateExactSolution (unsigned int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
 
SOLVER_UTILS_EXPORT void SetUpBaseFields (SpatialDomains::MeshGraphSharedPtr &mesh)
 
SOLVER_UTILS_EXPORT void ImportFldBase (std::string pInfile, SpatialDomains::MeshGraphSharedPtr pGraph)
 
virtual SOLVER_UTILS_EXPORT void v_Output (void)
 
virtual SOLVER_UTILS_EXPORT
MultiRegions::ExpListSharedPtr 
v_GetPressure (void)
 
virtual SOLVER_UTILS_EXPORT void v_ExtraFldOutput (std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
 

Protected Attributes

bool m_useSpecVanVisc
 
NekDouble m_sVVCutoffRatio
 
NekDouble m_sVVDiffCoeff
 
SolverUtils::DiffusionSharedPtr m_diffusion
 
SolverUtils::RiemannSolverSharedPtr m_riemannSolver
 
- Protected Attributes inherited from Nektar::SolverUtils::UnsteadySystem
int m_infosteps
 Number of time steps between outputting status information. More...
 
LibUtilities::TimeIntegrationWrapperSharedPtr m_intScheme
 Wrapper to the time integration scheme. More...
 
LibUtilities::TimeIntegrationSchemeOperators m_ode
 The time integration scheme operators to use. More...
 
LibUtilities::TimeIntegrationSolutionSharedPtr m_intSoln
 
NekDouble m_epsilon
 
bool m_explicitDiffusion
 Indicates if explicit or implicit treatment of diffusion is used. More...
 
bool m_explicitAdvection
 Indicates if explicit or implicit treatment of advection is used. More...
 
bool m_explicitReaction
 Indicates if explicit or implicit treatment of reaction is used. More...
 
bool m_homoInitialFwd
 Flag to determine if simulation should start in homogeneous forward transformed state. More...
 
std::vector< int > m_intVariables
 
std::vector< FilterSharedPtrm_filters
 
- Protected Attributes inherited from Nektar::SolverUtils::EquationSystem
LibUtilities::CommSharedPtr m_comm
 Communicator. More...
 
LibUtilities::SessionReaderSharedPtr m_session
 The session reader. More...
 
LibUtilities::FieldIOSharedPtr m_fld
 Field input/output. More...
 
map< std::string, Array< OneD,
Array< OneD, float > > > 
m_interpWeights
 Map of the interpolation weights for a specific filename. More...
 
map< std::string, Array< OneD,
Array< OneD, unsigned int > > > 
m_interpInds
 Map of the interpolation indices for a specific filename. More...
 
Array< OneD,
MultiRegions::ExpListSharedPtr
m_fields
 Array holding all dependent variables. More...
 
Array< OneD,
MultiRegions::ExpListSharedPtr
m_base
 Base fields. More...
 
Array< OneD,
MultiRegions::ExpListSharedPtr
m_derivedfields
 Array holding all dependent variables. More...
 
SpatialDomains::BoundaryConditionsSharedPtr m_boundaryConditions
 Pointer to boundary conditions object. More...
 
SpatialDomains::MeshGraphSharedPtr m_graph
 Pointer to graph defining mesh. More...
 
std::string m_sessionName
 Name of the session. More...
 
NekDouble m_time
 Current time of simulation. More...
 
int m_initialStep
 Number of the step where the simulation should begin. More...
 
NekDouble m_fintime
 Finish time of the simulation. More...
 
NekDouble m_timestep
 Time step size. More...
 
NekDouble m_lambda
 Lambda constant in real system if one required. More...
 
std::set< std::string > m_loadedFields
 
NekDouble m_checktime
 Time between checkpoints. More...
 
int m_nchk
 Number of checkpoints written so far. More...
 
int m_steps
 Number of steps to take. More...
 
int m_checksteps
 Number of steps between checkpoints. More...
 
int m_spacedim
 Spatial dimension (>= expansion dim). More...
 
int m_expdim
 Expansion dimension. More...
 
bool m_singleMode
 Flag to determine if single homogeneous mode is used. More...
 
bool m_halfMode
 Flag to determine if half homogeneous mode is used. More...
 
bool m_multipleModes
 Flag to determine if use multiple homogenenous modes are used. More...
 
bool m_useFFT
 Flag to determine if FFT is used for homogeneous transform. More...
 
bool m_homogen_dealiasing
 Flag to determine if dealiasing is used for homogeneous simulations. More...
 
bool m_specHP_dealiasing
 Flag to determine if dealisising is usde for the Spectral/hp element discretisation. More...
 
enum MultiRegions::ProjectionType m_projectionType
 Type of projection; e.g continuous or discontinuous. More...
 
Array< OneD, Array< OneD,
NekDouble > > 
m_traceNormals
 Array holding trace normals for DG simulations in the forwards direction. More...
 
Array< OneD, Array< OneD,
Array< OneD, NekDouble > > > 
m_gradtan
 1 x nvariable x nq More...
 
Array< OneD, Array< OneD,
Array< OneD, NekDouble > > > 
m_tanbasis
 2 x m_spacedim x nq More...
 
Array< OneD, bool > m_checkIfSystemSingular
 Flag to indicate if the fields should be checked for singularity. More...
 
LibUtilities::FieldMetaDataMap m_fieldMetaDataMap
 Map to identify relevant solver info to dump in output fields. More...
 
int m_NumQuadPointsError
 Number of Quadrature points used to work out the error. More...
 
enum HomogeneousType m_HomogeneousType
 
NekDouble m_LhomX
 physical length in X direction (if homogeneous) More...
 
NekDouble m_LhomY
 physical length in Y direction (if homogeneous) More...
 
NekDouble m_LhomZ
 physical length in Z direction (if homogeneous) More...
 
int m_npointsX
 number of points in X direction (if homogeneous) More...
 
int m_npointsY
 number of points in Y direction (if homogeneous) More...
 
int m_npointsZ
 number of points in Z direction (if homogeneous) More...
 
int m_HomoDirec
 number of homogenous directions More...
 
int m_NumMode
 Mode to use in case of single mode analysis. More...
 

Private Attributes

NekDouble m_waveFreq
 
NekDouble m_epsilon
 
StdRegions::VarCoeffMap m_varcoeff
 

Friends

class MemoryManager< UnsteadyDiffusion >
 

Additional Inherited Members

- Public Attributes inherited from Nektar::SolverUtils::UnsteadySystem
NekDouble m_cflSafetyFactor
 CFL safety factor (comprise between 0 to 1). More...
 
- Protected Types inherited from Nektar::SolverUtils::EquationSystem
enum  HomogeneousType { eHomogeneous1D, eHomogeneous2D, eHomogeneous3D, eNotHomogeneous }
 Parameter for homogeneous expansions. More...
 

Detailed Description

Definition at line 46 of file UnsteadyDiffusion.h.

Constructor & Destructor Documentation

Nektar::UnsteadyDiffusion::~UnsteadyDiffusion ( )
virtual

Destructor.

Unsteady diffusion problem destructor.

Definition at line 133 of file UnsteadyDiffusion.cpp.

134  {
135  }
Nektar::UnsteadyDiffusion::UnsteadyDiffusion ( const LibUtilities::SessionReaderSharedPtr pSession)
protected

Definition at line 44 of file UnsteadyDiffusion.cpp.

46  : UnsteadySystem(pSession)
47  {
48  }
SOLVER_UTILS_EXPORT UnsteadySystem(const LibUtilities::SessionReaderSharedPtr &pSession)
Initialises UnsteadySystem class members.

Member Function Documentation

static EquationSystemSharedPtr Nektar::UnsteadyDiffusion::create ( const LibUtilities::SessionReaderSharedPtr pSession)
inlinestatic

Creates an instance of this class.

Definition at line 52 of file UnsteadyDiffusion.h.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

53  {
55  p->InitObject();
56  return p;
57  }
static boost::shared_ptr< DataType > AllocateSharedPtr()
Allocate a shared pointer from the memory pool.
boost::shared_ptr< EquationSystem > EquationSystemSharedPtr
A shared pointer to an EquationSystem object.
void Nektar::UnsteadyDiffusion::DoImplicitSolve ( const Array< OneD, const Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray,
NekDouble  time,
NekDouble  lambda 
)
protectedvirtual

Implicit solution of the unsteady diffusion problem.

Definition at line 223 of file UnsteadyDiffusion.cpp.

References Nektar::StdRegions::eFactorLambda, Nektar::StdRegions::eFactorSVVCutoffRatio, Nektar::StdRegions::eFactorSVVDiffCoeff, Nektar::StdRegions::eFactorTau, m_epsilon, Nektar::SolverUtils::EquationSystem::m_fields, m_sVVCutoffRatio, m_sVVDiffCoeff, m_useSpecVanVisc, m_varcoeff, Nektar::NullFlagList, and Vmath::Smul().

Referenced by v_InitObject().

228  {
230 
231  int nvariables = inarray.num_elements();
232  int npoints = m_fields[0]->GetNpoints();
233  factors[StdRegions::eFactorLambda] = 1.0 / lambda / m_epsilon;
234  factors[StdRegions::eFactorTau] = 1.0;
235 
236  if(m_useSpecVanVisc)
237  {
240  }
241 
242  // We solve ( \nabla^2 - HHlambda ) Y[i] = rhs [i]
243  // inarray = input: \hat{rhs} -> output: \hat{Y}
244  // outarray = output: nabla^2 \hat{Y}
245  // where \hat = modal coeffs
246  for (int i = 0; i < nvariables; ++i)
247  {
248  // Multiply 1.0/timestep/lambda
249  Vmath::Smul(npoints,
250  -factors[StdRegions::eFactorLambda],
251  inarray[i], 1,
252  m_fields[i]->UpdatePhys(), 1);
253 
254  // Solve a system of equations with Helmholtz solver
255  m_fields[i]->HelmSolve(m_fields[i]->GetPhys(),
256  m_fields[i]->UpdateCoeffs(),
257  NullFlagList,
258  factors,
259  m_varcoeff);
260 
261  m_fields[i]->BwdTrans(m_fields[i]->GetCoeffs(),
262  m_fields[i]->UpdatePhys());
263 
264  m_fields[i]->SetPhysState(false);
265 
266  // The solution is Y[i]
267  outarray[i] = m_fields[i]->GetPhys();
268  }
269  }
std::map< ConstFactorType, NekDouble > ConstFactorMap
Definition: StdRegions.hpp:251
void Smul(int n, const T alpha, const T *x, const int incx, T *y, const int incy)
Scalar multiply y = alpha*y.
Definition: Vmath.cpp:199
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
StdRegions::VarCoeffMap m_varcoeff
static FlagList NullFlagList
An empty flag list.
void Nektar::UnsteadyDiffusion::DoOdeProjection ( const Array< OneD, const Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray,
const NekDouble  time 
)
protected

Compute the projection for the unsteady diffusion problem.

Parameters
inarrayGiven fields.
outarrayCalculated solution.
timeTime.

Definition at line 178 of file UnsteadyDiffusion.cpp.

References ASSERTL0, Nektar::MultiRegions::eDiscontinuous, Nektar::MultiRegions::eGalerkin, Nektar::MultiRegions::eMixed_CG_Discontinuous, Nektar::SolverUtils::EquationSystem::GetNcoeffs(), Nektar::SolverUtils::EquationSystem::GetNpoints(), Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_projectionType, Nektar::SolverUtils::EquationSystem::SetBoundaryConditions(), and Vmath::Vcopy().

Referenced by v_InitObject().

182  {
183  int i;
184  int nvariables = inarray.num_elements();
185  SetBoundaryConditions(time);
186 
187  switch(m_projectionType)
188  {
190  {
191  // Just copy over array
192  int npoints = GetNpoints();
193 
194  for(i = 0; i < nvariables; ++i)
195  {
196  Vmath::Vcopy(npoints, inarray[i], 1, outarray[i], 1);
197  }
198  break;
199  }
202  {
204 
205  for(i = 0; i < nvariables; ++i)
206  {
207  m_fields[i]->FwdTrans(inarray[i], coeffs);
208  m_fields[i]->BwdTrans_IterPerExp(coeffs, outarray[i]);
209  }
210  break;
211  }
212  default:
213  {
214  ASSERTL0(false, "Unknown projection scheme");
215  break;
216  }
217  }
218  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
enum MultiRegions::ProjectionType m_projectionType
Type of projection; e.g continuous or discontinuous.
SOLVER_UTILS_EXPORT void SetBoundaryConditions(NekDouble time)
Evaluates the boundary conditions at the given time.
SOLVER_UTILS_EXPORT int GetNpoints()
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
SOLVER_UTILS_EXPORT int GetNcoeffs()
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1047
void Nektar::UnsteadyDiffusion::DoOdeRhs ( const Array< OneD, const Array< OneD, NekDouble > > &  inarray,
Array< OneD, Array< OneD, NekDouble > > &  outarray,
const NekDouble  time 
)
protected

Definition at line 156 of file UnsteadyDiffusion.cpp.

References m_diffusion, and Nektar::SolverUtils::EquationSystem::m_fields.

Referenced by v_InitObject().

160  {
161  // Number of fields (variables of the problem)
162  int nVariables = inarray.num_elements();
163 
164  // RHS computation using the new advection base class
165  m_diffusion->Diffuse(nVariables,
166  m_fields,
167  inarray,
168  outarray);
169  }
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
SolverUtils::DiffusionSharedPtr m_diffusion
void Nektar::UnsteadyDiffusion::GetFluxVector ( const int  i,
const int  j,
const Array< OneD, Array< OneD, NekDouble > > &  physfield,
Array< OneD, Array< OneD, NekDouble > > &  derivatives,
Array< OneD, Array< OneD, NekDouble > > &  flux 
)
protected

Return the flux vector for the unsteady diffusion problem.

Definition at line 274 of file UnsteadyDiffusion.cpp.

References Nektar::SolverUtils::EquationSystem::GetNpoints(), Vmath::Vcopy(), and Vmath::Zero().

Referenced by v_InitObject().

280  {
281  for(int k = 0; k < flux.num_elements(); ++k)
282  {
283  Vmath::Zero(GetNpoints(), flux[k], 1);
284  }
285  Vmath::Vcopy(GetNpoints(), physfield[i], 1, flux[j], 1);
286  }
SOLVER_UTILS_EXPORT int GetNpoints()
void Zero(int n, T *x, const int incx)
Zero vector.
Definition: Vmath.cpp:359
void Vcopy(int n, const T *x, const int incx, T *y, const int incy)
Definition: Vmath.cpp:1047
void Nektar::UnsteadyDiffusion::v_GenerateSummary ( SummaryList s)
protectedvirtual

Print a summary of time stepping parameters.

Prints a summary with some information regards the time-stepping.

Reimplemented from Nektar::SolverUtils::UnsteadySystem.

Definition at line 137 of file UnsteadyDiffusion.cpp.

References Nektar::SolverUtils::AddSummaryItem(), m_sVVCutoffRatio, m_sVVDiffCoeff, and m_useSpecVanVisc.

138  {
139  UnsteadySystem::v_GenerateSummary(s);
140  if(m_useSpecVanVisc)
141  {
142  stringstream ss;
143  ss << "SVV (cut off = " << m_sVVCutoffRatio
144  << ", coeff = " << m_sVVDiffCoeff << ")";
145  AddSummaryItem(s, "Smoothing", ss.str());
146  }
147  }
void AddSummaryItem(SummaryList &l, const std::string &name, const std::string &value)
Adds a summary item to the summary info list.
Definition: Misc.cpp:50
void Nektar::UnsteadyDiffusion::v_InitObject ( )
protectedvirtual

Initialisation object for the unsteady diffusion problem.

Reimplemented from Nektar::SolverUtils::UnsteadySystem.

Definition at line 53 of file UnsteadyDiffusion.cpp.

References ASSERTL0, Nektar::LibUtilities::TimeIntegrationSchemeOperators::DefineImplicitSolve(), Nektar::LibUtilities::TimeIntegrationSchemeOperators::DefineOdeRhs(), Nektar::LibUtilities::TimeIntegrationSchemeOperators::DefineProjection(), DoImplicitSolve(), DoOdeProjection(), DoOdeRhs(), Nektar::MultiRegions::eDiscontinuous, Nektar::MultiRegions::eGalerkin, Nektar::MultiRegions::eMixed_CG_Discontinuous, Nektar::StdRegions::eVarCoeffD00, Nektar::StdRegions::eVarCoeffD11, Nektar::StdRegions::eVarCoeffD22, Nektar::SolverUtils::GetDiffusionFactory(), GetFluxVector(), m_diffusion, m_epsilon, Nektar::SolverUtils::UnsteadySystem::m_explicitDiffusion, Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::UnsteadySystem::m_homoInitialFwd, Nektar::SolverUtils::UnsteadySystem::m_ode, Nektar::SolverUtils::EquationSystem::m_projectionType, Nektar::SolverUtils::EquationSystem::m_session, m_sVVCutoffRatio, m_sVVDiffCoeff, m_useSpecVanVisc, m_varcoeff, and m_waveFreq.

54  {
55  UnsteadySystem::v_InitObject();
56 
57  m_session->LoadParameter("wavefreq", m_waveFreq, 0.0);
58  m_session->LoadParameter("epsilon", m_epsilon, 0.0);
59 
60  m_session->MatchSolverInfo(
61  "SpectralVanishingViscosity", "True", m_useSpecVanVisc, false);
62 
64  {
65  m_session->LoadParameter("SVVCutoffRatio",m_sVVCutoffRatio,0.75);
66  m_session->LoadParameter("SVVDiffCoeff",m_sVVDiffCoeff,0.1);
67  }
68 
69  int npoints = m_fields[0]->GetNpoints();
70 
71  if(m_session->DefinesParameter("d00"))
72  {
74  = Array<OneD, NekDouble>(npoints, m_session->GetParameter("d00"));
75  }
76  if(m_session->DefinesParameter("d11"))
77  {
79  = Array<OneD, NekDouble>(npoints, m_session->GetParameter("d11"));
80  }
81  if(m_session->DefinesParameter("d22"))
82  {
84  = Array<OneD, NekDouble>(npoints, m_session->GetParameter("d22"));
85  }
86 
87  switch (m_projectionType)
88  {
90  {
91  std::string diffName;
92 
93  // Do not forwards transform initial condition
94  m_homoInitialFwd = false;
95 
96  m_session->LoadSolverInfo("DiffusionType", diffName, "LDG");
98  CreateInstance(diffName, diffName);
99  m_diffusion->SetFluxVector(&UnsteadyDiffusion::
100  GetFluxVector, this);
101  m_diffusion->InitObject(m_session, m_fields);
102  break;
103  }
104 
107  {
108  // In case of Galerkin explicit diffusion gives an error
110  {
111  ASSERTL0(false, "Explicit Galerkin diffusion not set up.");
112  }
113  // In case of Galerkin implicit diffusion: do nothing
114  }
115  }
116 
117 
119  {
122  }
123  else
124  {
127  }
128  }
#define ASSERTL0(condition, msg)
Definition: ErrorUtil.hpp:161
void GetFluxVector(const int i, const int j, const Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &derivatives, Array< OneD, Array< OneD, NekDouble > > &flux)
Return the flux vector for the unsteady diffusion problem.
bool m_homoInitialFwd
Flag to determine if simulation should start in homogeneous forward transformed state.
bool m_explicitDiffusion
Indicates if explicit or implicit treatment of diffusion is used.
void DefineImplicitSolve(FuncPointerT func, ObjectPointerT obj)
LibUtilities::TimeIntegrationSchemeOperators m_ode
The time integration scheme operators to use.
DiffusionFactory & GetDiffusionFactory()
Definition: Diffusion.cpp:42
enum MultiRegions::ProjectionType m_projectionType
Type of projection; e.g continuous or discontinuous.
virtual void DoImplicitSolve(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, NekDouble time, NekDouble lambda)
Implicit solution of the unsteady diffusion problem.
void DoOdeProjection(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
Compute the projection for the unsteady diffusion problem.
void DefineProjection(FuncPointerT func, ObjectPointerT obj)
void DefineOdeRhs(FuncPointerT func, ObjectPointerT obj)
void DoOdeRhs(const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, Array< OneD, NekDouble > > &outarray, const NekDouble time)
Array< OneD, MultiRegions::ExpListSharedPtr > m_fields
Array holding all dependent variables.
LibUtilities::SessionReaderSharedPtr m_session
The session reader.
SolverUtils::DiffusionSharedPtr m_diffusion
StdRegions::VarCoeffMap m_varcoeff

Friends And Related Function Documentation

friend class MemoryManager< UnsteadyDiffusion >
friend

Definition at line 49 of file UnsteadyDiffusion.h.

Member Data Documentation

string Nektar::UnsteadyDiffusion::className = GetEquationSystemFactory().RegisterCreatorFunction("UnsteadyDiffusion", UnsteadyDiffusion::create)
static

Name of class.

Definition at line 59 of file UnsteadyDiffusion.h.

SolverUtils::DiffusionSharedPtr Nektar::UnsteadyDiffusion::m_diffusion
protected

Definition at line 68 of file UnsteadyDiffusion.h.

Referenced by DoOdeRhs(), and v_InitObject().

NekDouble Nektar::UnsteadyDiffusion::m_epsilon
private

Definition at line 100 of file UnsteadyDiffusion.h.

Referenced by DoImplicitSolve(), and v_InitObject().

SolverUtils::RiemannSolverSharedPtr Nektar::UnsteadyDiffusion::m_riemannSolver
protected

Definition at line 69 of file UnsteadyDiffusion.h.

NekDouble Nektar::UnsteadyDiffusion::m_sVVCutoffRatio
protected

Definition at line 66 of file UnsteadyDiffusion.h.

Referenced by DoImplicitSolve(), v_GenerateSummary(), and v_InitObject().

NekDouble Nektar::UnsteadyDiffusion::m_sVVDiffCoeff
protected

Definition at line 67 of file UnsteadyDiffusion.h.

Referenced by DoImplicitSolve(), v_GenerateSummary(), and v_InitObject().

bool Nektar::UnsteadyDiffusion::m_useSpecVanVisc
protected

Definition at line 65 of file UnsteadyDiffusion.h.

Referenced by DoImplicitSolve(), v_GenerateSummary(), and v_InitObject().

StdRegions::VarCoeffMap Nektar::UnsteadyDiffusion::m_varcoeff
private

Definition at line 101 of file UnsteadyDiffusion.h.

Referenced by DoImplicitSolve(), and v_InitObject().

NekDouble Nektar::UnsteadyDiffusion::m_waveFreq
private

Definition at line 99 of file UnsteadyDiffusion.h.

Referenced by v_InitObject().