#include <ContField3D.h>

Inheritance diagram for Nektar::MultiRegions::ContField3D:

Collaboration diagram for Nektar::MultiRegions::ContField3D:

Public Member Functions
	ContField3D ()

	ContField3D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &graph3D, const std::string &variable="DefaultVar", const bool CheckIfSingularSystem=false, const Collections::ImplementationType ImpType=Collections::eNoImpType)
	Construct a global continuous field. More...

	ContField3D (const ContField3D &In, const SpatialDomains::MeshGraphSharedPtr &graph3D, const std::string &variable, const bool CheckIfSingularSystem=false)
	Construct a global continuous field with solution type based on another field but using a separate input mesh and boundary conditions. More...

	ContField3D (const ContField3D &In)

virtual	~ContField3D ()

const Array< OneD, const MultiRegions::ExpListSharedPtr > &	GetBndCondExpansions ()

const Array< OneD, const MultiRegions::ExpListSharedPtr > &	GetBndCondExp ()
	This function return the boundary conditions expansion. More...

void	GenerateDirBndCondForcing (const GlobalLinSysKey &key, Array< OneD, NekDouble > &inout, Array< OneD, NekDouble > &outarray)

void	Assemble ()

void	Assemble (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

const AssemblyMapCGSharedPtr &	GetLocalToGlobalMap () const

int	GetGlobalMatrixNnz (const GlobalMatrixKey &gkey)

Public Member Functions inherited from Nektar::MultiRegions::DisContField3D
	DisContField3D ()
	Default constructor. More...

	DisContField3D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &graph3D, const std::string &variable, const bool SetUpJustDG=true, const Collections::ImplementationType ImpType=Collections::eNoImpType)
	Constructs a global discontinuous field based on an input mesh with boundary conditions. More...

	DisContField3D (const DisContField3D &In, const SpatialDomains::MeshGraphSharedPtr &graph3D, const std::string &variable, const bool SetUpJustDG=false)

	DisContField3D (const DisContField3D &In)
	Constructs a global discontinuous field based on another discontinuous field. More...

virtual	~DisContField3D ()
	Destructor. More...

GlobalLinSysSharedPtr	GetGlobalBndLinSys (const GlobalLinSysKey &mkey)

void	EvaluateHDGPostProcessing (Array< OneD, NekDouble > &outarray)
	Evaluate HDG post-processing to increase polynomial order of solution. More...

bool	GetLeftAdjacentFaces (int cnt)

Public Member Functions inherited from Nektar::MultiRegions::ExpList3D
	ExpList3D ()
	Default constructor. More...

	ExpList3D (const ExpList3D &In)
	Copy constructor. More...

	ExpList3D (const ExpList3D &In, const std::vector< unsigned int > &eIDs, const bool DeclareCoeffPhysArrays=true, const Collections::ImplementationType ImpType=Collections::eNoImpType)
	Constructor copying only elements defined in eIds. More...

	ExpList3D (const LibUtilities::SessionReaderSharedPtr &pSession, const LibUtilities::BasisKey &TBa, const LibUtilities::BasisKey &TBb, const LibUtilities::BasisKey &TBc, const LibUtilities::BasisKey &HBa, const LibUtilities::BasisKey &HBb, const LibUtilities::BasisKey &HBc, const SpatialDomains::MeshGraphSharedPtr &graph3D, const LibUtilities::PointsType TetNb=LibUtilities::SIZE_PointsType, const Collections::ImplementationType ImpType=Collections::eNoImpType)

	ExpList3D (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &graph3D, const std::string &variable="DefaultVar", const Collections::ImplementationType ImpType=Collections::eNoImpType)
	Sets up a list of local expansions based on an input mesh. More...

	ExpList3D (const SpatialDomains::ExpansionMap &expansions, const Collections::ImplementationType ImpType=Collections::eNoImpType)
	Sets up a list of local expansions based on an expansion vector. More...

virtual	~ExpList3D ()
	Destructor. More...

Public Member Functions inherited from Nektar::MultiRegions::ExpList
	ExpList ()
	The default constructor. More...

	ExpList (const LibUtilities::SessionReaderSharedPtr &pSession)
	The default constructor. More...

	ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph)
	The default constructor. More...

	ExpList (const ExpList &in, const std::vector< unsigned int > &eIDs, const bool DeclareCoeffPhysArrays=true)
	Constructor copying only elements defined in eIds. More...

	ExpList (const ExpList &in, const bool DeclareCoeffPhysArrays=true)
	The copy constructor. More...

virtual	~ExpList ()
	The default destructor. More...

int	GetNcoeffs (void) const
	Returns the total number of local degrees of freedom $N_{\mathrm{eof}}=\sum_{e=1}^{{N_{\mathrm{el}}}}N^{e}_m$ . More...

int	GetNcoeffs (const int eid) const
	Returns the total number of local degrees of freedom for element eid. More...

ExpansionType	GetExpType (void)
	Returns the type of the expansion. More...

void	SetExpType (ExpansionType Type)
	Returns the type of the expansion. More...

int	EvalBasisNumModesMax (void) const
	Evaulates the maximum number of modes in the elemental basis order over all elements. More...

const Array< OneD, int >	EvalBasisNumModesMaxPerExp (void) const
	Returns the vector of the number of modes in the elemental basis order over all elements. More...

int	GetTotPoints (void) const
	Returns the total number of quadrature points m_npoints $=Q_{\mathrm{tot}}$ . More...

int	GetTotPoints (const int eid) const
	Returns the total number of quadrature points for eid's element $=Q_{\mathrm{tot}}$ . More...

int	GetNpoints (void) const
	Returns the total number of quadrature points m_npoints $=Q_{\mathrm{tot}}$ . More...

int	Get1DScaledTotPoints (const NekDouble scale) const
	Returns the total number of qudature points scaled by the factor scale on each 1D direction. More...

void	SetWaveSpace (const bool wavespace)
	Sets the wave space to the one of the possible configuration true or false. More...

void	SetModifiedBasis (const bool modbasis)
	Set Modified Basis for the stability analysis. More...

void	SetPhys (int i, NekDouble val)
	Set the i th value of m_phys to value val. More...

bool	GetWaveSpace (void) const
	This function returns the third direction expansion condition, which can be in wave space (coefficient) or not It is stored in the variable m_WaveSpace. More...

void	SetPhys (const Array< OneD, const NekDouble > &inarray)
	Fills the array m_phys. More...

void	SetPhysArray (Array< OneD, NekDouble > &inarray)
	Sets the array m_phys. More...

void	SetPhysState (const bool physState)
	This function manually sets whether the array of physical values $\boldsymbol{u}_l$ (implemented as m_phys) is filled or not. More...

bool	GetPhysState (void) const
	This function indicates whether the array of physical values $\boldsymbol{u}_l$ (implemented as m_phys) is filled or not. More...

NekDouble	PhysIntegral (void)
	This function integrates a function $f(\boldsymbol{x})$ over the domain consisting of all the elements of the expansion. More...

NekDouble	PhysIntegral (const Array< OneD, const NekDouble > &inarray)
	This function integrates a function $f(\boldsymbol{x})$ over the domain consisting of all the elements of the expansion. More...

void	IProductWRTBase_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function calculates the inner product of a function $f(\boldsymbol{x})$ with respect to all {local} expansion modes $\phi_n^e(\boldsymbol{x})$ . More...

void	IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)

void	IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function calculates the inner product of a function $f(\boldsymbol{x})$ with respect to the derivative (in direction. More...

void	IProductWRTDerivBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray)
	This function calculates the inner product of a function $f(\boldsymbol{x})$ with respect to the derivative (in direction. More...

void	FwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function elementally evaluates the forward transformation of a function $u(\boldsymbol{x})$ onto the global spectral/hp expansion. More...

void	FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)

void	MultiplyByElmtInvMass (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function elementally mulplies the coefficient space of Sin my the elemental inverse of the mass matrix. More...

void	MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)

void	SmoothField (Array< OneD, NekDouble > &field)
	Smooth a field across elements. More...

void	HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const FlagList &flags, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff=StdRegions::NullVarCoeffMap, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray, const bool PhysSpaceForcing=true)
	Solve helmholtz problem. More...

void	LinearAdvectionDiffusionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
	Solve Advection Diffusion Reaction. More...

void	LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)
	Solve Advection Diffusion Reaction. More...

void	FwdTrans_BndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

void	BwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function elementally evaluates the backward transformation of the global spectral/hp element expansion. More...

void	BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)

void	GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1=NullNekDouble1DArray, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray)
	This function calculates the coordinates of all the elemental quadrature points $\boldsymbol{x}_i$ . More...

void	HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)

void	HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)

void	DealiasedProd (const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)

void	DealiasedDotProd (const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray, CoeffState coeffstate=eLocal)

void	GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID)

void	NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID)

void	NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray)

void	ApplyGeomInfo ()
	Apply geometry information to each expansion. More...

void	Reset ()
	Reset geometry information and reset matrices. More...

void	WriteTecplotHeader (std::ostream &outfile, std::string var="")

void	WriteTecplotZone (std::ostream &outfile, int expansion=-1)

void	WriteTecplotField (std::ostream &outfile, int expansion=-1)

void	WriteTecplotConnectivity (std::ostream &outfile, int expansion=-1)

void	WriteVtkHeader (std::ostream &outfile)

void	WriteVtkFooter (std::ostream &outfile)

void	WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip=0)

void	WriteVtkPieceFooter (std::ostream &outfile, int expansion)

void	WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var="v")

int	GetCoordim (int eid)
	This function returns the dimension of the coordinates of the element eid. More...

void	SetCoeff (int i, NekDouble val)
	Set the i th coefficiient in m_coeffs to value val. More...

void	SetCoeffs (int i, NekDouble val)
	Set the i th coefficiient in m_coeffs to value val. More...

void	SetCoeffsArray (Array< OneD, NekDouble > &inarray)
	Set the m_coeffs array to inarray. More...

const Array< OneD, const NekDouble > &	GetCoeffs () const
	This function returns (a reference to) the array $\boldsymbol{\hat{u}}_l$ (implemented as m_coeffs) containing all local expansion coefficients. More...

void	ImposeDirichletConditions (Array< OneD, NekDouble > &outarray)
	Impose Dirichlet Boundary Conditions onto Array. More...

void	FillBndCondFromField (void)
	Fill Bnd Condition expansion from the values stored in expansion. More...

void	FillBndCondFromField (const int nreg)
	Fill Bnd Condition expansion in nreg from the values stored in expansion. More...

void	LocalToGlobal (bool useComm=true)
	Gathers the global coefficients $\boldsymbol{\hat{u}}_g$ from the local coefficients $\boldsymbol{\hat{u}}_l$ . More...

void	LocalToGlobal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool useComm=true)

void	GlobalToLocal (void)
	Scatters from the global coefficients $\boldsymbol{\hat{u}}_g$ to the local coefficients $\boldsymbol{\hat{u}}_l$ . More...

void	GlobalToLocal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

NekDouble	GetCoeff (int i)
	Get the i th value (coefficient) of m_coeffs. More...

NekDouble	GetCoeffs (int i)
	Get the i th value (coefficient) of m_coeffs. More...

const Array< OneD, const NekDouble > &	GetPhys () const
	This function returns (a reference to) the array $\boldsymbol{u}_l$ (implemented as m_phys) containing the function $u^{\delta}(\boldsymbol{x})$ evaluated at the quadrature points. More...

NekDouble	Linf (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
	This function calculates the $L_\infty$ error of the global spectral/hp element approximation. More...

NekDouble	L2 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
	This function calculates the error with respect to soln of the global spectral/hp element approximation. More...

NekDouble	H1 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)
	Calculates the error of the global spectral/hp element approximation. More...

NekDouble	Integral (const Array< OneD, const NekDouble > &inarray)

Array< OneD, const NekDouble >	HomogeneousEnergy (void)
	This function calculates the energy associated with each one of the modesof a 3D homogeneous nD expansion. More...

void	SetHomo1DSpecVanVisc (Array< OneD, NekDouble > visc)
	This function sets the Spectral Vanishing Viscosity in homogeneous1D expansion. More...

Array< OneD, const unsigned int >	GetZIDs (void)
	This function returns a vector containing the wave numbers in z-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More...

LibUtilities::TranspositionSharedPtr	GetTransposition (void)
	This function returns the transposition class associaed with the homogeneous expansion. More...

NekDouble	GetHomoLen (void)
	This function returns the Width of homogeneous direction associaed with the homogeneous expansion. More...

Array< OneD, const unsigned int >	GetYIDs (void)
	This function returns a vector containing the wave numbers in y-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More...

void	PhysInterp1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function interpolates the physical space points in inarray to outarray using the same points defined in the expansion but where the number of points are rescaled by 1DScale. More...

void	PhysGalerkinProjection1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray)
	This function Galerkin projects the physical space points in inarray to outarray where inarray is assumed to be defined in the expansion but where the number of points are rescaled by 1DScale. More...

int	GetExpSize (void)
	This function returns the number of elements in the expansion. More...

int	GetNumElmts (void)
	This function returns the number of elements in the expansion which may be different for a homogeoenous extended expansionp. More...

const boost::shared_ptr < LocalRegions::ExpansionVector >	GetExp () const
	This function returns the vector of elements in the expansion. More...

LocalRegions::ExpansionSharedPtr &	GetExp (int n) const
	This function returns (a shared pointer to) the local elemental expansion of the $n^{\mathrm{th}}$ element. More...

LocalRegions::ExpansionSharedPtr &	GetExp (const Array< OneD, const NekDouble > &gloCoord)
	This function returns (a shared pointer to) the local elemental expansion containing the arbitrary point given by gloCoord. More...

int	GetExpIndex (const Array< OneD, const NekDouble > &gloCoord, NekDouble tol=0.0, bool returnNearestElmt=false)

int	GetExpIndex (const Array< OneD, const NekDouble > &gloCoords, Array< OneD, NekDouble > &locCoords, NekDouble tol=0.0, bool returnNearestElmt=false)

int	GetCoeff_Offset (int n) const
	Get the start offset position for a global list of m_coeffs correspoinding to element n. More...

int	GetPhys_Offset (int n) const
	Get the start offset position for a global list of m_phys correspoinding to element n. More...

Array< OneD, NekDouble > &	UpdateCoeffs ()
	This function returns (a reference to) the array $\boldsymbol{\hat{u}}_l$ (implemented as m_coeffs) containing all local expansion coefficients. More...

Array< OneD, NekDouble > &	UpdatePhys ()
	This function returns (a reference to) the array $\boldsymbol{u}_l$ (implemented as m_phys) containing the function $u^{\delta}(\boldsymbol{x})$ evaluated at the quadrature points. More...

void	PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)

void	PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray)
	This function discretely evaluates the derivative of a function $f(\boldsymbol{x})$ on the domain consisting of all elements of the expansion. More...

void	PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)

void	CurlCurl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q)

const Array< OneD, const boost::shared_ptr< ExpList > > &	GetBndCondExpansions ()

boost::shared_ptr< ExpList > &	UpdateBndCondExpansion (int i)

void	Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)

void	Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)

boost::shared_ptr< ExpList > &	GetTrace ()

boost::shared_ptr < AssemblyMapDG > &	GetTraceMap (void)

const Array< OneD, const int > &	GetTraceBndMap (void)

void	GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals)

void	AddTraceIntegral (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray)

void	AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray)

void	AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray)

void	GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)

void	GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)

const std::vector< bool > &	GetLeftAdjacentFaces (void) const

void	ExtractTracePhys (Array< OneD, NekDouble > &outarray)

void	ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

const Array< OneD, const SpatialDomains::BoundaryConditionShPtr > &	GetBndConditions ()

Array< OneD, SpatialDomains::BoundaryConditionShPtr > &	UpdateBndConditions ()

void	EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble=NekConstants::kNekUnsetDouble, const NekDouble=NekConstants::kNekUnsetDouble)

void	GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
	This function calculates the result of the multiplication of a matrix of type specified by mkey with a vector given by inarray. More...

void	GeneralMatrixOp_IterPerExp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

void	SetUpPhysNormals ()

void	GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID)

void	GetBndElmtExpansion (int i, boost::shared_ptr< ExpList > &result, const bool DeclareCoeffPhysArrays=true)

void	ExtractElmtToBndPhys (int i, Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary)

void	ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt)

void	ExtractPhysToBnd (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bnd)

void	GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals)

void	GeneralGetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef, int NumHomoDir=0, Array< OneD, LibUtilities::BasisSharedPtr > &HomoBasis=LibUtilities::NullBasisSharedPtr1DArray, std::vector< NekDouble > &HomoLen=LibUtilities::NullNekDoubleVector, bool homoStrips=false, std::vector< unsigned int > &HomoSIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoZIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoYIDs=LibUtilities::NullUnsignedIntVector)

const NekOptimize::GlobalOptParamSharedPtr &	GetGlobalOptParam (void)

std::map< int, RobinBCInfoSharedPtr >	GetRobinBCInfo ()

void	GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces=NullPeriodicMap)

std::vector < LibUtilities::FieldDefinitionsSharedPtr >	GetFieldDefinitions ()

void	GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef)

void	AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata)
	Append the element data listed in elements fielddef->m_ElementIDs onto fielddata. More...

void	AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs)
	Append the data in coeffs listed in elements fielddef->m_ElementIDs onto fielddata. More...

void	ExtractElmtDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs)
	Extract the data in fielddata into the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More...

void	ExtractCoeffsToCoeffs (const boost::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs)
	Extract the data from fromField using fromExpList the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More...

void	ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs)
	Extract the data in fielddata into the coeffs. More...

boost::shared_ptr< ExpList >	GetSharedThisPtr ()
	Returns a shared pointer to the current object. More...

boost::shared_ptr < LibUtilities::SessionReader >	GetSession () const
	Returns the session object. More...

boost::shared_ptr < LibUtilities::Comm >	GetComm ()
	Returns the comm object. More...

SpatialDomains::MeshGraphSharedPtr	GetGraph ()

LibUtilities::BasisSharedPtr	GetHomogeneousBasis (void)

boost::shared_ptr< ExpList > &	GetPlane (int n)

void	CreateCollections (Collections::ImplementationType ImpType=Collections::eNoImpType)
	Construct collections of elements containing a single element type and polynomial order from the list of expansions. More...

void	ClearGlobalLinSysManager (void)

Protected Member Functions
virtual void	v_BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
	Performs the backward transformation of the spectral/hp element expansion. More...

virtual void	v_IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)
	Calculates the inner product of a function $f(\boldsymbol{x})$ with respect to all global expansion modes $\phi_n^e(\boldsymbol{x})$ . More...

virtual void	v_FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)

Protected Member Functions inherited from Nektar::MultiRegions::DisContField3D
void	SetUpDG (const std::string="DefaultVar")
	Set up all DG member variables and maps. More...

bool	SameTypeOfBoundaryConditions (const DisContField3D &In)

void	GenerateBoundaryConditionExpansion (const SpatialDomains::MeshGraphSharedPtr &graph3D, const SpatialDomains::BoundaryConditions &bcs, const std::string &variable)

void	FindPeriodicFaces (const SpatialDomains::BoundaryConditions &bcs, const std::string &variable)
	Determine the periodic faces, edges and vertices for the given graph. More...

bool	IsLeftAdjacentFace (const int n, const int e)

virtual void	v_GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)
	This method extracts the "forward" and "backward" trace data from the array field and puts the data into output vectors Fwd and Bwd. More...

virtual void	v_GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd)

virtual const std::vector< bool > &	v_GetLeftAdjacentFaces (void) const

virtual void	v_ExtractTracePhys (Array< OneD, NekDouble > &outarray)

virtual void	v_ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

virtual void	v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray)
	Add trace contributions into elemental coefficient spaces. More...

virtual void	v_AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray)
	Add trace contributions into elemental coefficient spaces. More...

virtual void	v_GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &FaceID)
	Set up a list of elemeent IDs and edge IDs that link to the boundary conditions. More...

virtual void	v_GetBndElmtExpansion (int i, boost::shared_ptr< ExpList > &result, const bool DeclareCoeffPhysArrays)

virtual void	v_Reset ()
	Reset this field, so that geometry information can be updated. More...

virtual void	v_GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces)

virtual ExpListSharedPtr &	v_GetTrace ()

virtual AssemblyMapDGSharedPtr &	v_GetTraceMap ()

virtual const Array< OneD, const MultiRegions::ExpListSharedPtr > &	v_GetBndCondExpansions ()

virtual const Array< OneD, const SpatialDomains::BoundaryConditionShPtr > &	v_GetBndConditions ()

virtual MultiRegions::ExpListSharedPtr &	v_UpdateBndCondExpansion (int i)

virtual Array< OneD, SpatialDomains::BoundaryConditionShPtr > &	v_UpdateBndConditions ()

virtual void	v_EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble x2_in=NekConstants::kNekUnsetDouble, const NekDouble x3_in=NekConstants::kNekUnsetDouble)
	This function evaluates the boundary conditions at a certain time-level. More...

virtual std::map< int, RobinBCInfoSharedPtr >	v_GetRobinBCInfo ()

Protected Member Functions inherited from Nektar::MultiRegions::ExpList3D
virtual void	v_SetUpPhysNormals ()
	Set up the normals on each expansion. More...

Protected Member Functions inherited from Nektar::MultiRegions::ExpList
void	SetCoeffPhysOffsets ()
	Definition of the total number of degrees of freedom and quadrature points and offsets to access data. More...

boost::shared_ptr< DNekMat >	GenGlobalMatrixFull (const GlobalLinSysKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap)

const DNekScalBlkMatSharedPtr	GenBlockMatrix (const GlobalMatrixKey &gkey)
	This function assembles the block diagonal matrix of local matrices of the type mtype. More...

const DNekScalBlkMatSharedPtr &	GetBlockMatrix (const GlobalMatrixKey &gkey)

void	MultiplyByBlockMatrix (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

boost::shared_ptr< GlobalMatrix >	GenGlobalMatrix (const GlobalMatrixKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap)
	Generates a global matrix from the given key and map. More...

void	GlobalEigenSystem (const boost::shared_ptr< DNekMat > &Gmat, Array< OneD, NekDouble > &EigValsReal, Array< OneD, NekDouble > &EigValsImag, Array< OneD, NekDouble > &EigVecs=NullNekDouble1DArray)

boost::shared_ptr< GlobalLinSys >	GenGlobalLinSys (const GlobalLinSysKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap)
	This operation constructs the global linear system of type mkey. More...

boost::shared_ptr< GlobalLinSys >	GenGlobalBndLinSys (const GlobalLinSysKey &mkey, const AssemblyMapSharedPtr &locToGloMap)
	Generate a GlobalLinSys from information provided by the key "mkey" and the mapping provided in LocToGloBaseMap. More...

void	ReadGlobalOptimizationParameters ()

virtual int	v_GetNumElmts (void)

virtual void	v_Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)

virtual void	v_Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind)

virtual const Array< OneD, const int > &	v_GetTraceBndMap ()

virtual void	v_GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals)

virtual void	v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray)

virtual void	v_LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)

virtual void	v_BwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

virtual void	v_FwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

virtual void	v_SmoothField (Array< OneD, NekDouble > &field)

virtual void	v_IProductWRTBase_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

virtual void	v_GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray)

virtual void	v_PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2)

virtual void	v_PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)

virtual void	v_PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d)

virtual void	v_CurlCurl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q)

virtual void	v_HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)

virtual void	v_HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true)

virtual void	v_DealiasedProd (const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal)

virtual void	v_DealiasedDotProd (const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray, CoeffState coeffstate=eLocal)

virtual void	v_GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID)

virtual void	v_NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID)

virtual void	v_NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray)

virtual void	v_ExtractElmtToBndPhys (int i, Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary)

virtual void	v_ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt)

virtual void	v_ExtractPhysToBnd (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bnd)

virtual void	v_GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals)

virtual std::vector < LibUtilities::FieldDefinitionsSharedPtr >	v_GetFieldDefinitions (void)

virtual void	v_GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef)

virtual void	v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata)

virtual void	v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs)

virtual void	v_ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs)
	Extract data from raw field data into expansion list. More...

virtual void	v_ExtractCoeffsToCoeffs (const boost::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs)

virtual void	v_WriteTecplotHeader (std::ostream &outfile, std::string var="")

virtual void	v_WriteTecplotZone (std::ostream &outfile, int expansion)

virtual void	v_WriteTecplotField (std::ostream &outfile, int expansion)

virtual void	v_WriteTecplotConnectivity (std::ostream &outfile, int expansion)

virtual void	v_WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var)

virtual NekDouble	v_L2 (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray)

virtual NekDouble	v_Integral (const Array< OneD, const NekDouble > &inarray)

virtual Array< OneD, const NekDouble >	v_HomogeneousEnergy (void)

virtual LibUtilities::TranspositionSharedPtr	v_GetTransposition (void)

virtual NekDouble	v_GetHomoLen (void)

virtual Array< OneD, const unsigned int >	v_GetZIDs (void)

virtual Array< OneD, const unsigned int >	v_GetYIDs (void)

void	ExtractFileBCs (const std::string &fileName, LibUtilities::CommSharedPtr comm, const std::string &varName, const boost::shared_ptr< ExpList > locExpList)

Protected Attributes
AssemblyMapCGSharedPtr	m_locToGloMap

GlobalMatrixMapShPtr	m_globalMat
	(A shared pointer to) a list which collects all the global matrices being assembled, such that they should be constructed only once. More...

LibUtilities::NekManager < GlobalLinSysKey, GlobalLinSys >	m_globalLinSysManager
	(A shared pointer to) a list which collects all the global linear system being assembled, such that they should be constructed only once. More...

Protected Attributes inherited from Nektar::MultiRegions::DisContField3D
Array< OneD, MultiRegions::ExpListSharedPtr >	m_bndCondExpansions
	An object which contains the discretised boundary conditions. More...

Array< OneD, SpatialDomains::BoundaryConditionShPtr >	m_bndConditions
	An array which contains the information about the boundary condition on the different boundary regions. More...

GlobalLinSysMapShPtr	m_globalBndMat

ExpListSharedPtr	m_trace

AssemblyMapDGSharedPtr	m_traceMap

LocTraceToTraceMapSharedPtr	m_locTraceToTraceMap
	Map of local trace (the points at the face of the element) to the trace space discretisation. More...

std::set< int >	m_boundaryFaces
	A set storing the global IDs of any boundary faces. More...

PeriodicMap	m_periodicFaces
	A map which identifies pairs of periodic faces. More...

PeriodicMap	m_periodicEdges
	A map which identifies groups of periodic edges. More...

PeriodicMap	m_periodicVerts
	A map which identifies groups of periodic vertices. More...

std::vector< bool >	m_leftAdjacentFaces

std::vector< int >	m_periodicFwdCopy
	A vector indicating degress of freedom which need to be copied from forwards to backwards space in case of a periodic boundary condition. More...

std::vector< int >	m_periodicBwdCopy

Protected Attributes inherited from Nektar::MultiRegions::ExpList
LibUtilities::CommSharedPtr	m_comm
	Communicator. More...

LibUtilities::SessionReaderSharedPtr	m_session
	Session. More...

SpatialDomains::MeshGraphSharedPtr	m_graph
	Mesh associated with this expansion list. More...

int	m_ncoeffs
	The total number of local degrees of freedom. m_ncoeffs $=N_{\mathrm{eof}}=\sum_{e=1}^{{N_{\mathrm{el}}}}N^{e}_l$ . More...

int	m_npoints

Array< OneD, NekDouble >	m_coeffs
	Concatenation of all local expansion coefficients. More...

Array< OneD, NekDouble >	m_phys
	The global expansion evaluated at the quadrature points. More...

bool	m_physState
	The state of the array m_phys. More...

boost::shared_ptr < LocalRegions::ExpansionVector >	m_exp
	The list of local expansions. More...

Collections::CollectionVector	m_collections

std::vector< int >	m_coll_coeff_offset
	Offset of elemental data into the array m_coeffs. More...

std::vector< int >	m_coll_phys_offset
	Offset of elemental data into the array m_phys. More...

Array< OneD, int >	m_coeff_offset
	Offset of elemental data into the array m_coeffs. More...

Array< OneD, int >	m_phys_offset
	Offset of elemental data into the array m_phys. More...

NekOptimize::GlobalOptParamSharedPtr	m_globalOptParam

BlockMatrixMapShPtr	m_blockMat

bool	m_WaveSpace

boost::unordered_map< int, int >	m_elmtToExpId
	Mapping from geometry ID of element to index inside m_exp. More...

Private Member Functions
GlobalLinSysSharedPtr	GetGlobalLinSys (const GlobalLinSysKey &mkey)

GlobalLinSysSharedPtr	GenGlobalLinSys (const GlobalLinSysKey &mkey)

GlobalMatrixSharedPtr	GetGlobalMatrix (const GlobalMatrixKey &mkey)
	Returns the global matrix specified by mkey. More...

void	GlobalSolve (const GlobalLinSysKey &key, const Array< OneD, const NekDouble > &rhs, Array< OneD, NekDouble > &inout, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)

virtual void	v_ImposeDirichletConditions (Array< OneD, NekDouble > &outarray)
	Impose the Dirichlet Boundary Conditions on outarray. More...

virtual void	v_FillBndCondFromField ()

virtual void	v_FillBndCondFromField (const int nreg)

virtual void	v_LocalToGlobal (bool useComm)

virtual void	v_LocalToGlobal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool useComm)

virtual void	v_GlobalToLocal (void)

virtual void	v_GlobalToLocal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray)

virtual void	v_MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)

virtual void	v_HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const FlagList &flags, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff, const Array< OneD, const NekDouble > &dirForcing, const bool PhysSpaceForcing)

virtual void	v_GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate)
	Calculates the result of the multiplication of a global matrix of type specified by mkey with a vector given by inarray. More...

virtual void	v_LinearAdvectionDiffusionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray)

virtual void	v_ClearGlobalLinSysManager (void)

Additional Inherited Members
Public Attributes inherited from Nektar::MultiRegions::DisContField3D
Array< OneD, int >	m_BCtoElmMap

Array< OneD, int >	m_BCtoFaceMap

Public Attributes inherited from Nektar::MultiRegions::ExpList
ExpansionType	m_expType

Static Protected Member Functions inherited from Nektar::MultiRegions::ExpList
static SpatialDomains::BoundaryConditionShPtr	GetBoundaryCondition (const SpatialDomains::BoundaryConditionCollection &collection, unsigned int index, const std::string &variable)

Detailed Description

Definition at line 51 of file ContField3D.h.

Constructor & Destructor Documentation

Nektar::MultiRegions::ContField3D::ContField3D ( )

Definition at line 48 of file ContField3D.cpp.

                                 :
             DisContField3D(),
             m_locToGloMap(),
             m_globalMat(),
             m_globalLinSysManager(
                     boost::bind(&ContField3D::GenGlobalLinSys, this, _1),
                     std::string("GlobalLinSys"))
         {
         }

Nektar::MultiRegions::ContField3D::ContField3D	(	const LibUtilities::SessionReaderSharedPtr &	pSession,
		const SpatialDomains::MeshGraphSharedPtr &	graph3D,
		const std::string &	variable = `"DefaultVar"`,
		const bool	CheckIfSingularSystem = `false`,
		const Collections::ImplementationType	ImpType = `Collections::eNoImpType`
	)

Construct a global continuous field.

Given a mesh graph2D, containing information about the domain and the spectral/hp element expansion, this constructor fills the list of local expansions m_exp with the proper expansions, calculates the total number of quadrature points $\boldsymbol{x}_i$ and local expansion coefficients $\hat{u}^e_n$ and allocates memory for the arrays m_coeffs and m_phys. Furthermore, it constructs the mapping array (contained in m_locToGloMap) for the transformation between local elemental level and global level, it calculates the total number global expansion coefficients $\hat{u}_n$ and allocates memory for the array m_coeffs. The constructor also discretises the boundary conditions, specified by the argument bcs, by expressing them in terms of the coefficient of the expansion on the boundary.

Parameters

pSession	Session information.
graph3D	A mesh, containing information about the domain and the spectral/hp element expansion.
variable	The variable associated with this field.

Definition at line 79 of file ContField3D.cpp.

References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::DisContField3D::m_bndConditions, m_locToGloMap, Nektar::MultiRegions::ExpList::m_ncoeffs, Nektar::MultiRegions::DisContField3D::m_periodicEdges, Nektar::MultiRegions::DisContField3D::m_periodicFaces, Nektar::MultiRegions::DisContField3D::m_periodicVerts, and Nektar::MultiRegions::ExpList::m_session.

                                                                              :
             DisContField3D(pSession,graph3D,variable,false,ImpType),
                 m_globalMat(MemoryManager<GlobalMatrixMap>::AllocateSharedPtr()),
                 m_globalLinSysManager(
                         boost::bind(&ContField3D::GenGlobalLinSys, this, _1),
                         std::string("GlobalLinSys"))
         {
             m_locToGloMap = MemoryManager<AssemblyMapCG>::AllocateSharedPtr(
                 m_session,m_ncoeffs,*this,m_bndCondExpansions,m_bndConditions,
                 CheckIfSingularSystem, variable,
                 m_periodicVerts, m_periodicEdges, m_periodicFaces);
 
             if (m_session->DefinesCmdLineArgument("verbose"))
             {
                 m_locToGloMap->PrintStats(std::cout, variable);
             }
         }

Nektar::MultiRegions::ContField3D::ContField3D	(	const ContField3D &	In,
		const SpatialDomains::MeshGraphSharedPtr &	graph3D,
		const std::string &	variable,
		const bool	CheckIfSingularSystem = `false`
	)

Construct a global continuous field with solution type based on another field but using a separate input mesh and boundary conditions.

Given a mesh graph3D, containing information about the domain and the spectral/hp element expansion, this constructor fills the list of local expansions m_exp with the proper expansions, calculates the total number of quadrature points $\boldsymbol{x}_i$ and local expansion coefficients $\hat{u}^e_n$ and allocates memory for the arrays m_coeffs and m_phys. Furthermore, it constructs the mapping array (contained in m_locToGloMap) for the transformation between local elemental level and global level, it calculates the total number global expansion coefficients $\hat{u}_n$ and allocates memory for the array m_coeffs. The constructor also discretises the boundary conditions, specified by the argument bcs, by expressing them in terms of the coefficient of the expansion on the boundary.

Parameters

In	Existing ContField2D object used to provide the local to global mapping information and global solution type.
graph3D	A mesh, containing information about the domain and the spectral/hp element expansion.
bcs	The boundary conditions.
bc_loc

Definition at line 125 of file ContField3D.cpp.

                                                                   :
         DisContField3D(In,graph3D,variable,false),
             m_globalMat   (MemoryManager<GlobalMatrixMap>::AllocateSharedPtr()),
             m_globalLinSysManager(boost::bind(&ContField3D::GenGlobalLinSys, this, _1),
                                   std::string("GlobalLinSys"))
 
         {
             if(!SameTypeOfBoundaryConditions(In) || CheckIfSingularSystem)
             {
                 SpatialDomains::BoundaryConditions bcs(m_session, graph3D);
                 m_locToGloMap = MemoryManager<AssemblyMapCG>::AllocateSharedPtr(
                     m_session,m_ncoeffs,*this,m_bndCondExpansions,m_bndConditions,
                     CheckIfSingularSystem, variable,
                     m_periodicVerts, m_periodicEdges, m_periodicFaces);
 
                 if (m_session->DefinesCmdLineArgument("verbose"))
                 {
                     m_locToGloMap->PrintStats(std::cout, variable);
                 }
             }
             else
             {
                 m_locToGloMap = In.m_locToGloMap;
             }
         }

Nektar::MultiRegions::ContField3D::ContField3D ( const ContField3D & In )

Definition at line 155 of file ContField3D.cpp.

                                                      :
                 DisContField3D(In),
                 m_locToGloMap(In.m_locToGloMap),
                 m_globalMat(In.m_globalMat),
                 m_globalLinSysManager(In.m_globalLinSysManager)
         {
         }

Nektar::MultiRegions::ContField3D::~ContField3D ( )

virtual

Definition at line 164 of file ContField3D.cpp.

165 {

166 }

Member Function Documentation

void Nektar::MultiRegions::ContField3D::Assemble ( )

inline

Definition at line 217 of file ContField3D.h.

References Nektar::MultiRegions::ExpList::m_coeffs, and m_locToGloMap.

Referenced by v_GeneralMatrixOp(), v_HelmSolve(), v_IProductWRTBase(), and v_MultiplyByInvMassMatrix().

         {
             m_locToGloMap->Assemble(m_coeffs, m_coeffs);
         }

void Nektar::MultiRegions::ContField3D::Assemble	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray
	)

inline

Definition at line 222 of file ContField3D.h.

References m_locToGloMap.

         {
             m_locToGloMap->Assemble(inarray, outarray);
         }

void Nektar::MultiRegions::ContField3D::GenerateDirBndCondForcing	(	const GlobalLinSysKey &	key,
		Array< OneD, NekDouble > &	inout,
		Array< OneD, NekDouble > &	outarray
	)

Definition at line 327 of file ContField3D.cpp.

References Nektar::SpatialDomains::eDirichlet, Nektar::MultiRegions::eGlobal, Nektar::MultiRegions::ExpList::GeneralMatrixOp(), Nektar::MultiRegions::ExpList::GetNcoeffs(), Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::DisContField3D::m_bndConditions, m_locToGloMap, and sign.

       {
           int bndcnt=0;
           const Array<OneD,const int>& map = m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsMap();
           NekDouble sign;
           
           for(int i = 0; i < m_bndCondExpansions.num_elements(); ++i)
           {
               if(m_bndConditions[i]->GetBoundaryConditionType() == SpatialDomains::eDirichlet)
               {
                   const Array<OneD,const NekDouble>& coeffs = m_bndCondExpansions[i]->GetCoeffs();
                   for(int j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); ++j)
                   {
                       sign = m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsSign(bndcnt);
                       if(sign)
                       {
                           inout[map[bndcnt++]] = sign * coeffs[j];
                       }
                       else
                       {
                           bndcnt++;
                       }
                   }
               }
               else
               {
                   bndcnt += m_bndCondExpansions[i]->GetNcoeffs();
               }
             }
           GeneralMatrixOp(key,inout,outarray,eGlobal);
       }

GlobalLinSysSharedPtr Nektar::MultiRegions::ContField3D::GenGlobalLinSys ( const GlobalLinSysKey & mkey )

private

Definition at line 392 of file ContField3D.cpp.

References ASSERTL1, Nektar::MultiRegions::ExpList::GenGlobalLinSys(), Nektar::MultiRegions::GlobalMatrixKey::LocToGloMapIsDefined(), and m_locToGloMap.

       {
           ASSERTL1(mkey.LocToGloMapIsDefined(),
                    "To use method must have a AssemblyMap "
                    "attached to key");
           return ExpList::GenGlobalLinSys(mkey, m_locToGloMap);
       }

const Array< OneD, const MultiRegions::ExpListSharedPtr > & Nektar::MultiRegions::ContField3D::GetBndCondExp ( )

inline

This function return the boundary conditions expansion.

Definition at line 211 of file ContField3D.h.

References Nektar::MultiRegions::DisContField3D::m_bndCondExpansions.

         {
             return m_bndCondExpansions;
         }

const Array<OneD,const MultiRegions::ExpListSharedPtr>& Nektar::MultiRegions::ContField3D::GetBndCondExpansions ( )

inline

Definition at line 77 of file ContField3D.h.

References Nektar::MultiRegions::DisContField3D::m_bndCondExpansions.

             {
                 return m_bndCondExpansions;
             }

GlobalLinSysSharedPtr Nektar::MultiRegions::ContField3D::GetGlobalLinSys ( const GlobalLinSysKey & mkey )

private

Definition at line 386 of file ContField3D.cpp.

References m_globalLinSysManager.

Referenced by GlobalSolve().

       {
           return m_globalLinSysManager[mkey];
       }

GlobalMatrixSharedPtr Nektar::MultiRegions::ContField3D::GetGlobalMatrix ( const GlobalMatrixKey & mkey )

private

Returns the global matrix specified by mkey.

Returns the global matrix associated with the given GlobalMatrixKey. If the global matrix has not yet been constructed on this field, it is first constructed using GenGlobalMatrix().

Parameters

mkey	Global matrix key.

Returns: Assocated global matrix.

Definition at line 408 of file ContField3D.cpp.

References ASSERTL1, Nektar::MultiRegions::ExpList::GenGlobalMatrix(), Nektar::iterator, Nektar::MultiRegions::GlobalMatrixKey::LocToGloMapIsDefined(), m_globalMat, and m_locToGloMap.

Referenced by v_BwdTrans(), v_GeneralMatrixOp(), and v_IProductWRTBase().

       {
           ASSERTL1(mkey.LocToGloMapIsDefined(),
                    "To use method must have a AssemblyMap "
                    "attached to key");
           
             GlobalMatrixSharedPtr glo_matrix;
             GlobalMatrixMap::iterator matrixIter = m_globalMat->find(mkey);
             
             if(matrixIter == m_globalMat->end())
             {
                 glo_matrix = GenGlobalMatrix(mkey,m_locToGloMap);
                 (*m_globalMat)[mkey] = glo_matrix;
             }
             else
             {
                 glo_matrix = matrixIter->second;
             }
             
             return glo_matrix;
       }

int Nektar::MultiRegions::ContField3D::GetGlobalMatrixNnz ( const GlobalMatrixKey & gkey )

Definition at line 751 of file ContField3D.cpp.

References ASSERTL1, Nektar::iterator, Nektar::MultiRegions::GlobalMatrixKey::LocToGloMapIsDefined(), and m_globalMat.

       {
           ASSERTL1(gkey.LocToGloMapIsDefined(),
                    "To use method must have a AssemblyMap "
                    "attached to key");
           
           GlobalMatrixMap::iterator matrixIter = m_globalMat->find(gkey);
           
           if(matrixIter == m_globalMat->end())
           {
               return 0;
           }
           else
           {
               return matrixIter->second->GetNumNonZeroEntries();
           }
           
           return 0;
       }

const AssemblyMapCGSharedPtr & Nektar::MultiRegions::ContField3D::GetLocalToGlobalMap ( ) const

inline

Definition at line 230 of file ContField3D.h.

References m_locToGloMap.

         {
             return  m_locToGloMap;
         }

void Nektar::MultiRegions::ContField3D::GlobalSolve	(	const GlobalLinSysKey &	key,
		const Array< OneD, const NekDouble > &	rhs,
		Array< OneD, NekDouble > &	inout,
		const Array< OneD, const NekDouble > &	dirForcing = `NullNekDouble1DArray`
	)

private

Definition at line 364 of file ContField3D.cpp.

References GetGlobalLinSys(), m_locToGloMap, and v_ImposeDirichletConditions().

Referenced by v_FwdTrans(), v_HelmSolve(), v_LinearAdvectionDiffusionReactionSolve(), and v_MultiplyByInvMassMatrix().

       {
           int NumDirBcs = m_locToGloMap->GetNumGlobalDirBndCoeffs();
           int contNcoeffs = m_locToGloMap->GetNumGlobalCoeffs();
           
           // STEP 1: SET THE DIRICHLET DOFS TO THE RIGHT VALUE
           //         IN THE SOLUTION ARRAY
           v_ImposeDirichletConditions(inout);
           
           
           // STEP 2: CALCULATE THE HOMOGENEOUS COEFFICIENTS
           if(contNcoeffs - NumDirBcs > 0)
           {
               GlobalLinSysSharedPtr LinSys = GetGlobalLinSys(key);
               LinSys->Solve(rhs,inout,m_locToGloMap,dirForcing);
           }
       }

void Nektar::MultiRegions::ContField3D::v_BwdTrans	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		CoeffState	coeffstate = `eLocal`
	)

protectedvirtual

Performs the backward transformation of the spectral/hp element expansion.

Given the coefficients of an expansion, this function evaluates the spectral/hp expansion $u^{\delta}(\boldsymbol{x})$ at the quadrature points $\boldsymbol{x}_i$ . This operation is evaluated locally by the function ExpList::BwdTrans.

The coefficients of the expansion should be contained in the variable #inarray of the ExpList object In. The resulting physical values at the quadrature points $u^{\delta}(\boldsymbol{x}_i)$ are stored in the array #outarray.

Parameters

In	An ExpList, containing the local coefficients $\hat{u}_n^e$ in its array m_coeffs.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 183 of file ContField3D.cpp.

References Nektar::MultiRegions::ExpList::BwdTrans_IterPerExp(), Nektar::StdRegions::eBwdTrans, Nektar::MultiRegions::eGlobal, GetGlobalMatrix(), Nektar::MultiRegions::ExpList::GlobalToLocal(), Nektar::MultiRegions::ExpList::m_globalOptParam, m_locToGloMap, and Nektar::MultiRegions::ExpList::m_ncoeffs.

         {
             if(coeffstate == eGlobal)
             {
                 bool doGlobalOp = m_globalOptParam->DoGlobalMatOp(
                                                         StdRegions::eBwdTrans);
 
                 if(doGlobalOp)
                 {
                     GlobalMatrixKey gkey(StdRegions::eBwdTrans,m_locToGloMap);
                     GlobalMatrixSharedPtr mat = GetGlobalMatrix(gkey);
                     mat->Multiply(inarray,outarray);
                 }
                 else
                 {
                     Array<OneD, NekDouble> wsp(m_ncoeffs);
                     GlobalToLocal(inarray,wsp);
                     BwdTrans_IterPerExp(wsp,outarray);
                 }
             }
             else
             {
                 BwdTrans_IterPerExp(inarray,outarray);
             }
         }

void Nektar::MultiRegions::ContField3D::v_ClearGlobalLinSysManager ( void )

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 775 of file ContField3D.cpp.

References m_globalLinSysManager.

       {
           m_globalLinSysManager.ClearManager("GlobalLinSys");
       }

void Nektar::MultiRegions::ContField3D::v_FillBndCondFromField ( void )

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 495 of file ContField3D.cpp.

References Nektar::MultiRegions::ExpList::GetNcoeffs(), Nektar::MultiRegions::ExpList::LocalToGlobal(), Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::ExpList::m_coeffs, m_locToGloMap, and sign.

       {
           NekDouble sign;
           int bndcnt = 0;
           const Array<OneD,const int> &bndMap = 
               m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsMap();
 
           Array<OneD, NekDouble> tmp(m_locToGloMap->GetNumGlobalCoeffs());
           LocalToGlobal(m_coeffs,tmp,false);
                     
           // Now fill in all other Dirichlet coefficients.
           for(int i = 0; i < m_bndCondExpansions.num_elements(); ++i)
           {
               Array<OneD, NekDouble>& coeffs = m_bndCondExpansions[i]->UpdateCoeffs();
 
               for(int j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); ++j)
               {
                   sign = m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsSign(bndcnt);
                   coeffs[j] = sign * tmp[bndMap[bndcnt++]];
               }
           }
       }

void Nektar::MultiRegions::ContField3D::v_FillBndCondFromField ( const int nreg )

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 518 of file ContField3D.cpp.

References ASSERTL1, Nektar::MultiRegions::ExpList::GetNcoeffs(), Nektar::MultiRegions::ExpList::LocalToGlobal(), Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::ExpList::m_coeffs, m_locToGloMap, and sign.

       {
           NekDouble sign;
           int bndcnt = 0;
           const Array<OneD,const int> &bndMap = 
               m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsMap();
 
           Array<OneD, NekDouble> tmp(m_locToGloMap->GetNumGlobalCoeffs());
           LocalToGlobal(m_coeffs,tmp,false);
                     
           ASSERTL1(nreg < m_bndCondExpansions.num_elements(),
                    "nreg is out or range since this many boundary "
                    "regions to not exist");
 
             // Now fill in all other Dirichlet coefficients.
           Array<OneD, NekDouble>& coeffs = m_bndCondExpansions[nreg]->UpdateCoeffs();
           
           for(int j = 0; j < nreg; ++j)
           {
               bndcnt += m_bndCondExpansions[j]->GetNcoeffs();
           }
           
           for(int j = 0; j < (m_bndCondExpansions[nreg])->GetNcoeffs(); ++j)
           {
               sign = m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsSign(bndcnt);
               coeffs[j] = sign * tmp[bndMap[bndcnt++]];
           }
       }

void Nektar::MultiRegions::ContField3D::v_FwdTrans	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		CoeffState	coeffstate
	)

protectedvirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 259 of file ContField3D.cpp.

References Nektar::MultiRegions::eGlobal, Nektar::StdRegions::eMass, GlobalSolve(), Nektar::MultiRegions::ExpList::GlobalToLocal(), Nektar::MultiRegions::ExpList::IProductWRTBase(), and m_locToGloMap.

       {
           // Inner product of forcing
           int contNcoeffs = m_locToGloMap->GetNumGlobalCoeffs();
           Array<OneD,NekDouble> wsp(contNcoeffs);
           IProductWRTBase(inarray,wsp,eGlobal);
           
           // Solve the system
           GlobalLinSysKey key(StdRegions::eMass, m_locToGloMap);
           
           if(coeffstate == eGlobal)
           {
               GlobalSolve(key,wsp,outarray);
           }
           else
           {
               Array<OneD,NekDouble> tmp(contNcoeffs,0.0);
               GlobalSolve(key,wsp,tmp);
               GlobalToLocal(tmp,outarray);
           }
       }

void Nektar::MultiRegions::ContField3D::v_GeneralMatrixOp	(	const GlobalMatrixKey &	gkey,
		const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		CoeffState	coeffstate
	)

privatevirtual

Calculates the result of the multiplication of a global matrix of type specified by mkey with a vector given by inarray.

Parameters

mkey	Key representing desired matrix multiplication.
inarray	Input vector.
outarray	Resulting multiplication.

Reimplemented from Nektar::MultiRegions::DisContField3D.

Definition at line 644 of file ContField3D.cpp.

References Assemble(), Nektar::MultiRegions::eGlobal, Nektar::MultiRegions::ExpList::GeneralMatrixOp_IterPerExp(), GetGlobalMatrix(), Nektar::MultiRegions::GlobalMatrixKey::GetMatrixType(), Nektar::MultiRegions::ExpList::GlobalToLocal(), Nektar::MultiRegions::ExpList::m_globalOptParam, m_locToGloMap, and Nektar::MultiRegions::ExpList::m_ncoeffs.

       {
           if(coeffstate == eGlobal)
           {
               bool doGlobalOp = m_globalOptParam->DoGlobalMatOp(gkey.GetMatrixType());
               
               if(doGlobalOp)
               {
                   GlobalMatrixSharedPtr mat = GetGlobalMatrix(gkey);
                   mat->Multiply(inarray,outarray);
                   m_locToGloMap->UniversalAssemble(outarray);
               }
               else
               {
                   Array<OneD,NekDouble> tmp1(2*m_ncoeffs);
                   Array<OneD,NekDouble> tmp2(tmp1+m_ncoeffs);
                   GlobalToLocal(inarray,tmp1);
                   GeneralMatrixOp_IterPerExp(gkey,tmp1,tmp2);
                   Assemble(tmp2,outarray);
               }
           }
           else
           {
               GeneralMatrixOp_IterPerExp(gkey,inarray,outarray);
           }
       }

void Nektar::MultiRegions::ContField3D::v_GlobalToLocal ( void )

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 563 of file ContField3D.cpp.

References Nektar::MultiRegions::ExpList::m_coeffs, and m_locToGloMap.

       {
           m_locToGloMap->GlobalToLocal(m_coeffs, m_coeffs);
       }

void Nektar::MultiRegions::ContField3D::v_GlobalToLocal	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray
	)

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 569 of file ContField3D.cpp.

References m_locToGloMap.

       {
           m_locToGloMap->GlobalToLocal(inarray, outarray);
       }

void Nektar::MultiRegions::ContField3D::v_HelmSolve	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		const FlagList &	flags,
		const StdRegions::ConstFactorMap &	factors,
		const StdRegions::VarCoeffMap &	varcoeff,
		const Array< OneD, const NekDouble > &	dirForcing,
		const bool	PhysSpaceForcing
	)

privatevirtual

Solving Helmholtz Equation in 3D

Reimplemented from Nektar::MultiRegions::DisContField3D.

Definition at line 577 of file ContField3D.cpp.

References Assemble(), Nektar::SpatialDomains::eDirichlet, Nektar::MultiRegions::eGlobal, Nektar::StdRegions::eHelmholtz, Nektar::eUseGlobal, Nektar::MultiRegions::ExpList::GetNcoeffs(), GlobalSolve(), Nektar::MultiRegions::ExpList::GlobalToLocal(), Nektar::MultiRegions::ExpList::IProductWRTBase(), Nektar::FlagList::isSet(), Nektar::MultiRegions::ExpList::LocalToGlobal(), Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::DisContField3D::m_bndConditions, m_locToGloMap, Vmath::Neg(), sign, and Vmath::Vadd().

       {
           // Inner product of forcing
           int contNcoeffs = m_locToGloMap->GetNumGlobalCoeffs();
           Array<OneD,NekDouble> wsp(contNcoeffs);
           if(PhysSpaceForcing)
           {
               IProductWRTBase(inarray,wsp,eGlobal);
           }
           else
           {
               Assemble(inarray,wsp);
           }
 
           // Note -1.0 term necessary to invert forcing function to
           // be consistent with matrix definition
           Vmath::Neg(contNcoeffs, wsp, 1);
           
           // Forcing function with weak boundary conditions
           int i,j;
           int bndcnt = 0;
           NekDouble sign;
           Array<OneD, NekDouble> gamma(contNcoeffs, 0.0);
           for(i = 0; i < m_bndCondExpansions.num_elements(); ++i)
           {
               if(m_bndConditions[i]->GetBoundaryConditionType() != SpatialDomains::eDirichlet)
               {
                   for(j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); j++)
                   {
                       sign = m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsSign(bndcnt);
                       gamma[m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsMap(bndcnt++)] +=
                           sign * (m_bndCondExpansions[i]->GetCoeffs())[j];
                   }
               }
               else
               {
                   bndcnt += m_bndCondExpansions[i]->GetNcoeffs();
               }
           }
           m_locToGloMap->UniversalAssemble(gamma);
           
           // Add weak boundary conditions to forcing
           Vmath::Vadd(contNcoeffs, wsp, 1, gamma, 1, wsp, 1);
           
           // Solve the system
           GlobalLinSysKey key(StdRegions::eHelmholtz, m_locToGloMap, factors,varcoeff);
           
           if(flags.isSet(eUseGlobal))
           {
               GlobalSolve(key,wsp,outarray,dirForcing);
           }
           else
           {
               Array<OneD,NekDouble> tmp(contNcoeffs);
               LocalToGlobal(outarray,tmp);
               GlobalSolve(key,wsp,tmp,dirForcing);
               GlobalToLocal(tmp,outarray);
           }
       }

void Nektar::MultiRegions::ContField3D::v_ImposeDirichletConditions ( Array< OneD, NekDouble > & outarray )

privatevirtual

Impose the Dirichlet Boundary Conditions on outarray.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 431 of file ContField3D.cpp.

References Nektar::SpatialDomains::eDirichlet, Nektar::MultiRegions::ExpList::GetNcoeffs(), Nektar::iterator, Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::DisContField3D::m_bndConditions, m_locToGloMap, sign, and Vmath::Vcopy().

Referenced by GlobalSolve().

       {
           int i,j;
           int bndcnt = 0;
           int nDir   = m_locToGloMap->GetNumGlobalDirBndCoeffs();
           
           NekDouble sign;
           const Array<OneD,const int> &bndMap = 
               m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsMap();
           
           Array<OneD, NekDouble> tmp(
               m_locToGloMap->GetNumGlobalBndCoeffs(), 0.0);
 
           // Fill in Dirichlet coefficients that are to be sent to other
           // processors.  This code block uses a tuple<int,int.NekDouble> which
           // stores the local id of coefficent the global id of the data
           // location and the inverse of the values of the data (arising from
           // periodic boundary conditiosn)
           map<int, vector<ExtraDirDof> > &extraDirDofs =
               m_locToGloMap->GetExtraDirDofs();
           map<int, vector<ExtraDirDof> >::iterator it;
           for (it = extraDirDofs.begin(); it != extraDirDofs.end(); ++it)
           {
               for (i = 0; i < it->second.size(); ++i)
               {
                   tmp[it->second.at(i).get<1>()] = 
                       m_bndCondExpansions[it->first]->GetCoeffs()[
                            it->second.at(i).get<0>()]*it->second.at(i).get<2>();
               }
           }
 
           m_locToGloMap->UniversalAssembleBnd(tmp);
           
           // Now fill in all other Dirichlet coefficients.
           for(i = 0; i < m_bndCondExpansions.num_elements(); ++i)
           {
               if(m_bndConditions[i]->GetBoundaryConditionType() == 
                      SpatialDomains::eDirichlet)
               {
                   const Array<OneD,const NekDouble>& coeffs = 
                       m_bndCondExpansions[i]->GetCoeffs();
                   for(j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); ++j)
                   {
                       sign = m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsSign(
                           bndcnt);
                       if (sign)
                       {
                           tmp[bndMap[bndcnt++]] = sign * coeffs[j];
                       }
                       else
                       {
                           bndcnt++;
                       }
                   }
               }
               else
               {
                   bndcnt += m_bndCondExpansions[i]->GetNcoeffs();
               }
           }
           
           Vmath::Vcopy(nDir, tmp, 1, outarray, 1);
       }          

void Nektar::MultiRegions::ContField3D::v_IProductWRTBase	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		CoeffState	coeffstate = `eLocal`
	)

protectedvirtual

Calculates the inner product of a function $f(\boldsymbol{x})$ with respect to all global expansion modes $\phi_n^e(\boldsymbol{x})$ .

The operation is evaluated locally (i.e. with respect to all local expansion modes) by the function ExpList::IProductWRTBase. The inner product with respect to the global expansion modes is than obtained by a global assembly operation.

The values of the function $f(\boldsymbol{x})$ evaluated at the quadrature points $\boldsymbol{x}_i$ should be contained in the variable m_phys of the ExpList object in. The result is stored in the array m_coeffs.

Parameters

In	An ExpList, containing the discrete evaluation of $f(\boldsymbol{x})$ at the quadrature points in its array m_phys.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 228 of file ContField3D.cpp.

References Assemble(), Nektar::MultiRegions::eGlobal, Nektar::StdRegions::eIProductWRTBase, GetGlobalMatrix(), Nektar::MultiRegions::ExpList::IProductWRTBase_IterPerExp(), Nektar::MultiRegions::ExpList::m_globalOptParam, m_locToGloMap, and Nektar::MultiRegions::ExpList::m_ncoeffs.

         {
             if(coeffstate == eGlobal)
             {
                 bool doGlobalOp = m_globalOptParam->DoGlobalMatOp(
                                                 StdRegions::eIProductWRTBase);
 
                 if(doGlobalOp)
                 {
                     GlobalMatrixKey gkey(StdRegions::eIProductWRTBase,
                                          m_locToGloMap);
                     GlobalMatrixSharedPtr mat = GetGlobalMatrix(gkey);
                     mat->Multiply(inarray,outarray);
                     m_locToGloMap->UniversalAssemble(outarray);
                 }
                 else
                 {
                     Array<OneD, NekDouble> wsp(m_ncoeffs);
                     IProductWRTBase_IterPerExp(inarray,wsp);
                     Assemble(wsp,outarray);
                 }
             }
             else
             {
                 IProductWRTBase_IterPerExp(inarray,outarray);
             }
         }

void Nektar::MultiRegions::ContField3D::v_LinearAdvectionDiffusionReactionSolve	(	const Array< OneD, Array< OneD, NekDouble > > &	velocity,
		const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		const NekDouble	lambda,
		CoeffState	coeffstate = `eLocal`,
		const Array< OneD, const NekDouble > &	dirForcing = `NullNekDouble1DArray`
	)

privatevirtual

First compute the inner product of forcing function with respect to base, and then solve the system with the linear advection operator.

Parameters

velocity	Array of advection velocities in physical space
inarray	Forcing function.
outarray	Result.
lambda	reaction coefficient
coeffstate	State of Coefficients, Local or Global
dirForcing	Dirichlet Forcing.

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 686 of file ContField3D.cpp.

References Nektar::SpatialDomains::eDirichlet, Nektar::StdRegions::eFactorLambda, Nektar::MultiRegions::eGlobal, Nektar::StdRegions::eLinearAdvectionDiffusionReaction, Nektar::StdRegions::eVarCoeffVelX, Nektar::StdRegions::eVarCoeffVelY, Nektar::StdRegions::eVarCoeffVelZ, Nektar::MultiRegions::ExpList::GetNcoeffs(), GlobalSolve(), Nektar::MultiRegions::ExpList::GlobalToLocal(), Nektar::MultiRegions::ExpList::IProductWRTBase(), Nektar::MultiRegions::DisContField3D::m_bndCondExpansions, Nektar::MultiRegions::DisContField3D::m_bndConditions, m_locToGloMap, Vmath::Neg(), and Vmath::Vadd().

     {
         // Inner product of forcing
         int contNcoeffs = m_locToGloMap->GetNumGlobalCoeffs();
         Array<OneD, NekDouble> wsp(contNcoeffs);
         IProductWRTBase(inarray, wsp, eGlobal);
         // Note -1.0 term necessary to invert forcing function to
         // be consistent with matrix definition
         Vmath::Neg(contNcoeffs, wsp, 1);
 
         // Forcing function with weak boundary conditions
         int i, j;
         int bndcnt = 0;
         Array<OneD, NekDouble> gamma(contNcoeffs, 0.0);
         for (i = 0; i < m_bndCondExpansions.num_elements(); ++i)
         {
             if (m_bndConditions[i]->GetBoundaryConditionType() !=
                 SpatialDomains::eDirichlet)
             {
                 for (j = 0; j < (m_bndCondExpansions[i])->GetNcoeffs(); j++)
                 {
                     gamma[m_locToGloMap->GetBndCondCoeffsToGlobalCoeffsMap(
                         bndcnt++)] += (m_bndCondExpansions[i]->GetCoeffs())[j];
                 }
             }
             else
             {
                 bndcnt += m_bndCondExpansions[i]->GetNcoeffs();
             }
         }
         m_locToGloMap->UniversalAssemble(gamma);
         // Add weak boundary conditions to forcing
         Vmath::Vadd(contNcoeffs, wsp, 1, gamma, 1, wsp, 1);
 
         // Solve the system
         StdRegions::ConstFactorMap factors;
         factors[StdRegions::eFactorLambda] = lambda;
         StdRegions::VarCoeffMap varcoeffs;
         varcoeffs[StdRegions::eVarCoeffVelX] = velocity[0];
         varcoeffs[StdRegions::eVarCoeffVelY] = velocity[1];
         varcoeffs[StdRegions::eVarCoeffVelZ] = velocity[2];
         GlobalLinSysKey key(StdRegions::eLinearAdvectionDiffusionReaction,
                             m_locToGloMap,
                             factors,
                             varcoeffs);
 
         if (coeffstate == eGlobal)
         {
             GlobalSolve(key, wsp, outarray, dirForcing);
         }
         else
         {
             Array<OneD, NekDouble> tmp(contNcoeffs, 0.0);
             GlobalSolve(key, wsp, tmp, dirForcing);
             GlobalToLocal(tmp, outarray);
         }
     }

void Nektar::MultiRegions::ContField3D::v_LocalToGlobal ( bool useComm )

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 548 of file ContField3D.cpp.

References Nektar::MultiRegions::ExpList::m_coeffs, and m_locToGloMap.

       {
           m_locToGloMap->LocalToGlobal(m_coeffs, m_coeffs,useComm);
       }

void Nektar::MultiRegions::ContField3D::v_LocalToGlobal	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		bool	useComm
	)

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 554 of file ContField3D.cpp.

References m_locToGloMap.

       {
           m_locToGloMap->LocalToGlobal(inarray, outarray, useComm);
       }

void Nektar::MultiRegions::ContField3D::v_MultiplyByInvMassMatrix	(	const Array< OneD, const NekDouble > &	inarray,
		Array< OneD, NekDouble > &	outarray,
		CoeffState	coeffstate
	)

privatevirtual

Reimplemented from Nektar::MultiRegions::ExpList.

Definition at line 284 of file ContField3D.cpp.

References Assemble(), Nektar::MultiRegions::eGlobal, Nektar::StdRegions::eMass, GlobalSolve(), Nektar::MultiRegions::ExpList::GlobalToLocal(), m_locToGloMap, and Vmath::Vcopy().

       {
           int contNcoeffs = m_locToGloMap->GetNumGlobalCoeffs();
           GlobalLinSysKey key(StdRegions::eMass, m_locToGloMap);
           
           if(coeffstate == eGlobal)
           {
               if(inarray.data() == outarray.data())
               {
                   Array<OneD, NekDouble> tmp(contNcoeffs,0.0);
                   Vmath::Vcopy(contNcoeffs,inarray,1,tmp,1);
                   GlobalSolve(key,tmp,outarray);
               }
               else
               {
                   GlobalSolve(key,inarray,outarray);
               }
           }
           else
           {
               Array<OneD, NekDouble> globaltmp(contNcoeffs,0.0);
               
               if(inarray.data() == outarray.data())
               {
                   Array<OneD,NekDouble> tmp(inarray.num_elements());
                   Vmath::Vcopy(inarray.num_elements(),inarray,1,tmp,1);
                   Assemble(tmp,outarray);
               }
               else
               {
                   Assemble(inarray,outarray);
               }
               
               GlobalSolve(key,outarray,globaltmp);
               GlobalToLocal(globaltmp,outarray);
           }
       }

Member Data Documentation

LibUtilities::NekManager<GlobalLinSysKey, GlobalLinSys> Nektar::MultiRegions::ContField3D::m_globalLinSysManager

protected

(A shared pointer to) a list which collects all the global linear system being assembled, such that they should be constructed only once.

Definition at line 114 of file ContField3D.h.

Referenced by GetGlobalLinSys(), and v_ClearGlobalLinSysManager().

GlobalMatrixMapShPtr Nektar::MultiRegions::ContField3D::m_globalMat

protected

(A shared pointer to) a list which collects all the global matrices being assembled, such that they should be constructed only once.

Definition at line 109 of file ContField3D.h.

Referenced by GetGlobalMatrix(), and GetGlobalMatrixNnz().

AssemblyMapCGSharedPtr Nektar::MultiRegions::ContField3D::m_locToGloMap

protected

Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation