Nektar++
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Abstraction of a two-dimensional multi-elemental expansion which is merely a collection of local expansions. More...
#include <ExpListHomogeneous1D.h>
Public Member Functions | |
ExpListHomogeneous1D () | |
Default constructor. More... | |
ExpListHomogeneous1D (const LibUtilities::SessionReaderSharedPtr &pSession, const LibUtilities::BasisKey &HomoBasis, const NekDouble lz, const bool useFFT, const bool dealiasing) | |
ExpListHomogeneous1D (const ExpListHomogeneous1D &In) | |
Copy constructor. More... | |
ExpListHomogeneous1D (const ExpListHomogeneous1D &In, const std::vector< unsigned int > &eIDs) | |
virtual | ~ExpListHomogeneous1D () |
Destructor. More... | |
void | Homogeneous1DTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool IsForwards, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
void | HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
void | HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
LibUtilities::BasisSharedPtr | GetHomogeneousBasis (void) |
void | PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) |
void | PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
ExpListSharedPtr & | GetPlane (int n) |
Public Member Functions inherited from Nektar::MultiRegions::ExpList | |
ExpList () | |
The default constructor. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession) | |
The default constructor. More... | |
ExpList (const LibUtilities::SessionReaderSharedPtr &pSession, const SpatialDomains::MeshGraphSharedPtr &pGraph) | |
The default constructor. More... | |
ExpList (const ExpList &in, const std::vector< unsigned int > &eIDs, const bool DeclareCoeffPhysArrays=true) | |
Constructor copying only elements defined in eIds. More... | |
ExpList (const ExpList &in, const bool DeclareCoeffPhysArrays=true) | |
The copy constructor. More... | |
virtual | ~ExpList () |
The default destructor. More... | |
int | GetNcoeffs (void) const |
Returns the total number of local degrees of freedom . More... | |
int | GetNcoeffs (const int eid) const |
Returns the total number of local degrees of freedom for element eid. More... | |
ExpansionType | GetExpType (void) |
Returns the type of the expansion. More... | |
void | SetExpType (ExpansionType Type) |
Returns the type of the expansion. More... | |
int | EvalBasisNumModesMax (void) const |
Evaulates the maximum number of modes in the elemental basis order over all elements. More... | |
const Array< OneD, int > | EvalBasisNumModesMaxPerExp (void) const |
Returns the vector of the number of modes in the elemental basis order over all elements. More... | |
int | GetTotPoints (void) const |
Returns the total number of quadrature points m_npoints . More... | |
int | GetTotPoints (const int eid) const |
Returns the total number of quadrature points for eid's element . More... | |
int | GetNpoints (void) const |
Returns the total number of quadrature points m_npoints . More... | |
int | Get1DScaledTotPoints (const NekDouble scale) const |
Returns the total number of qudature points scaled by the factor scale on each 1D direction. More... | |
void | SetWaveSpace (const bool wavespace) |
Sets the wave space to the one of the possible configuration true or false. More... | |
void | SetModifiedBasis (const bool modbasis) |
Set Modified Basis for the stability analysis. More... | |
void | SetPhys (int i, NekDouble val) |
Set the i th value of m_phys to value val. More... | |
bool | GetWaveSpace (void) const |
This function returns the third direction expansion condition, which can be in wave space (coefficient) or not It is stored in the variable m_WaveSpace. More... | |
void | SetPhys (const Array< OneD, const NekDouble > &inarray) |
Fills the array m_phys. More... | |
void | SetPhysArray (Array< OneD, NekDouble > &inarray) |
Sets the array m_phys. More... | |
void | SetPhysState (const bool physState) |
This function manually sets whether the array of physical values (implemented as m_phys) is filled or not. More... | |
bool | GetPhysState (void) const |
This function indicates whether the array of physical values (implemented as m_phys) is filled or not. More... | |
NekDouble | PhysIntegral (void) |
This function integrates a function over the domain consisting of all the elements of the expansion. More... | |
NekDouble | PhysIntegral (const Array< OneD, const NekDouble > &inarray) |
This function integrates a function over the domain consisting of all the elements of the expansion. More... | |
void | IProductWRTBase_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the inner product of a function with respect to all {local} expansion modes . More... | |
void | IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
void | IProductWRTDerivBase (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the inner product of a function with respect to the derivative (in direction. More... | |
void | IProductWRTDerivBase (const Array< OneD, const Array< OneD, NekDouble > > &inarray, Array< OneD, NekDouble > &outarray) |
This function calculates the inner product of a function with respect to the derivative (in direction. More... | |
void | FwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function elementally evaluates the forward transformation of a function onto the global spectral/hp expansion. More... | |
void | FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
void | MultiplyByElmtInvMass (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function elementally mulplies the coefficient space of Sin my the elemental inverse of the mass matrix. More... | |
void | MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
void | SmoothField (Array< OneD, NekDouble > &field) |
Smooth a field across elements. More... | |
void | HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const FlagList &flags, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff=StdRegions::NullVarCoeffMap, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray, const bool PhysSpaceForcing=true) |
Solve helmholtz problem. More... | |
void | LinearAdvectionDiffusionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray) |
Solve Advection Diffusion Reaction. More... | |
void | LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray) |
Solve Advection Diffusion Reaction. More... | |
void | FwdTrans_BndConstrained (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | BwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function elementally evaluates the backward transformation of the global spectral/hp element expansion. More... | |
void | BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
void | GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1=NullNekDouble1DArray, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray) |
This function calculates the coordinates of all the elemental quadrature points . More... | |
void | HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
void | HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
void | DealiasedProd (const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
void | DealiasedDotProd (const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray, CoeffState coeffstate=eLocal) |
void | GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID) |
void | NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID) |
void | NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray) |
void | ApplyGeomInfo () |
Apply geometry information to each expansion. More... | |
void | Reset () |
Reset geometry information and reset matrices. More... | |
void | WriteTecplotHeader (std::ostream &outfile, std::string var="") |
void | WriteTecplotZone (std::ostream &outfile, int expansion=-1) |
void | WriteTecplotField (std::ostream &outfile, int expansion=-1) |
void | WriteTecplotConnectivity (std::ostream &outfile, int expansion=-1) |
void | WriteVtkHeader (std::ostream &outfile) |
void | WriteVtkFooter (std::ostream &outfile) |
void | WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip=0) |
void | WriteVtkPieceFooter (std::ostream &outfile, int expansion) |
void | WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var="v") |
int | GetCoordim (int eid) |
This function returns the dimension of the coordinates of the element eid. More... | |
void | SetCoeff (int i, NekDouble val) |
Set the i th coefficiient in m_coeffs to value val. More... | |
void | SetCoeffs (int i, NekDouble val) |
Set the i th coefficiient in m_coeffs to value val. More... | |
void | SetCoeffsArray (Array< OneD, NekDouble > &inarray) |
Set the m_coeffs array to inarray. More... | |
const Array< OneD, const NekDouble > & | GetCoeffs () const |
This function returns (a reference to) the array (implemented as m_coeffs) containing all local expansion coefficients. More... | |
void | ImposeDirichletConditions (Array< OneD, NekDouble > &outarray) |
Impose Dirichlet Boundary Conditions onto Array. More... | |
void | FillBndCondFromField (void) |
Fill Bnd Condition expansion from the values stored in expansion. More... | |
void | FillBndCondFromField (const int nreg) |
Fill Bnd Condition expansion in nreg from the values stored in expansion. More... | |
void | LocalToGlobal (bool useComm=true) |
Gathers the global coefficients from the local coefficients . More... | |
void | LocalToGlobal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool useComm=true) |
void | GlobalToLocal (void) |
Scatters from the global coefficients to the local coefficients . More... | |
void | GlobalToLocal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
NekDouble | GetCoeff (int i) |
Get the i th value (coefficient) of m_coeffs. More... | |
NekDouble | GetCoeffs (int i) |
Get the i th value (coefficient) of m_coeffs. More... | |
const Array< OneD, const NekDouble > & | GetPhys () const |
This function returns (a reference to) the array (implemented as m_phys) containing the function evaluated at the quadrature points. More... | |
NekDouble | Linf (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
This function calculates the error of the global spectral/hp element approximation. More... | |
NekDouble | L2 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
This function calculates the error with respect to soln of the global spectral/hp element approximation. More... | |
NekDouble | H1 (const Array< OneD, const NekDouble > &inarray, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
Calculates the error of the global spectral/hp element approximation. More... | |
NekDouble | Integral (const Array< OneD, const NekDouble > &inarray) |
Array< OneD, const NekDouble > | HomogeneousEnergy (void) |
This function calculates the energy associated with each one of the modesof a 3D homogeneous nD expansion. More... | |
void | SetHomo1DSpecVanVisc (Array< OneD, NekDouble > visc) |
This function sets the Spectral Vanishing Viscosity in homogeneous1D expansion. More... | |
Array< OneD, const unsigned int > | GetZIDs (void) |
This function returns a vector containing the wave numbers in z-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More... | |
LibUtilities::TranspositionSharedPtr | GetTransposition (void) |
This function returns the transposition class associaed with the homogeneous expansion. More... | |
NekDouble | GetHomoLen (void) |
This function returns the Width of homogeneous direction associaed with the homogeneous expansion. More... | |
Array< OneD, const unsigned int > | GetYIDs (void) |
This function returns a vector containing the wave numbers in y-direction associated with the 3D homogenous expansion. Required if a parellelisation is applied in the Fourier direction. More... | |
void | PhysInterp1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function interpolates the physical space points in inarray to outarray using the same points defined in the expansion but where the number of points are rescaled by 1DScale. More... | |
void | PhysGalerkinProjection1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
This function Galerkin projects the physical space points in inarray to outarray where inarray is assumed to be defined in the expansion but where the number of points are rescaled by 1DScale. More... | |
int | GetExpSize (void) |
This function returns the number of elements in the expansion. More... | |
int | GetNumElmts (void) |
This function returns the number of elements in the expansion which may be different for a homogeoenous extended expansionp. More... | |
const boost::shared_ptr < LocalRegions::ExpansionVector > | GetExp () const |
This function returns the vector of elements in the expansion. More... | |
LocalRegions::ExpansionSharedPtr & | GetExp (int n) const |
This function returns (a shared pointer to) the local elemental expansion of the element. More... | |
LocalRegions::ExpansionSharedPtr & | GetExp (const Array< OneD, const NekDouble > &gloCoord) |
This function returns (a shared pointer to) the local elemental expansion containing the arbitrary point given by gloCoord. More... | |
int | GetExpIndex (const Array< OneD, const NekDouble > &gloCoord, NekDouble tol=0.0, bool returnNearestElmt=false) |
int | GetExpIndex (const Array< OneD, const NekDouble > &gloCoords, Array< OneD, NekDouble > &locCoords, NekDouble tol=0.0, bool returnNearestElmt=false) |
int | GetCoeff_Offset (int n) const |
Get the start offset position for a global list of m_coeffs correspoinding to element n. More... | |
int | GetPhys_Offset (int n) const |
Get the start offset position for a global list of m_phys correspoinding to element n. More... | |
Array< OneD, NekDouble > & | UpdateCoeffs () |
This function returns (a reference to) the array (implemented as m_coeffs) containing all local expansion coefficients. More... | |
Array< OneD, NekDouble > & | UpdatePhys () |
This function returns (a reference to) the array (implemented as m_phys) containing the function evaluated at the quadrature points. More... | |
void | PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
void | PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1=NullNekDouble1DArray, Array< OneD, NekDouble > &out_d2=NullNekDouble1DArray) |
This function discretely evaluates the derivative of a function on the domain consisting of all elements of the expansion. More... | |
void | PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
void | CurlCurl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q) |
const Array< OneD, const boost::shared_ptr< ExpList > > & | GetBndCondExpansions () |
boost::shared_ptr< ExpList > & | UpdateBndCondExpansion (int i) |
void | Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
void | Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
boost::shared_ptr< ExpList > & | GetTrace () |
boost::shared_ptr < AssemblyMapDG > & | GetTraceMap (void) |
const Array< OneD, const int > & | GetTraceBndMap (void) |
void | GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals) |
void | AddTraceIntegral (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray) |
void | AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray) |
void | AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray) |
void | GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
void | GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
const std::vector< bool > & | GetLeftAdjacentFaces (void) const |
void | ExtractTracePhys (Array< OneD, NekDouble > &outarray) |
void | ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
const Array< OneD, const SpatialDomains::BoundaryConditionShPtr > & | GetBndConditions () |
Array< OneD, SpatialDomains::BoundaryConditionShPtr > & | UpdateBndConditions () |
void | EvaluateBoundaryConditions (const NekDouble time=0.0, const std::string varName="", const NekDouble=NekConstants::kNekUnsetDouble, const NekDouble=NekConstants::kNekUnsetDouble) |
void | GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
This function calculates the result of the multiplication of a matrix of type specified by mkey with a vector given by inarray. More... | |
void | GeneralMatrixOp_IterPerExp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
void | SetUpPhysNormals () |
void | GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID) |
void | GetBndElmtExpansion (int i, boost::shared_ptr< ExpList > &result, const bool DeclareCoeffPhysArrays=true) |
void | ExtractElmtToBndPhys (int i, Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary) |
void | ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt) |
void | ExtractPhysToBnd (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bnd) |
void | GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals) |
void | GeneralGetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef, int NumHomoDir=0, Array< OneD, LibUtilities::BasisSharedPtr > &HomoBasis=LibUtilities::NullBasisSharedPtr1DArray, std::vector< NekDouble > &HomoLen=LibUtilities::NullNekDoubleVector, bool homoStrips=false, std::vector< unsigned int > &HomoSIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoZIDs=LibUtilities::NullUnsignedIntVector, std::vector< unsigned int > &HomoYIDs=LibUtilities::NullUnsignedIntVector) |
const NekOptimize::GlobalOptParamSharedPtr & | GetGlobalOptParam (void) |
std::map< int, RobinBCInfoSharedPtr > | GetRobinBCInfo () |
void | GetPeriodicEntities (PeriodicMap &periodicVerts, PeriodicMap &periodicEdges, PeriodicMap &periodicFaces=NullPeriodicMap) |
std::vector < LibUtilities::FieldDefinitionsSharedPtr > | GetFieldDefinitions () |
void | GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef) |
void | AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata) |
Append the element data listed in elements fielddef->m_ElementIDs onto fielddata. More... | |
void | AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs) |
Append the data in coeffs listed in elements fielddef->m_ElementIDs onto fielddata. More... | |
void | ExtractElmtDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs) |
Extract the data in fielddata into the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More... | |
void | ExtractCoeffsToCoeffs (const boost::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs) |
Extract the data from fromField using fromExpList the coeffs using the basic ExpList Elemental expansions rather than planes in homogeneous case. More... | |
void | ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs) |
Extract the data in fielddata into the coeffs. More... | |
boost::shared_ptr< ExpList > | GetSharedThisPtr () |
Returns a shared pointer to the current object. More... | |
boost::shared_ptr < LibUtilities::SessionReader > | GetSession () const |
Returns the session object. More... | |
boost::shared_ptr < LibUtilities::Comm > | GetComm () |
Returns the comm object. More... | |
SpatialDomains::MeshGraphSharedPtr | GetGraph () |
LibUtilities::BasisSharedPtr | GetHomogeneousBasis (void) |
boost::shared_ptr< ExpList > & | GetPlane (int n) |
void | CreateCollections (Collections::ImplementationType ImpType=Collections::eNoImpType) |
Construct collections of elements containing a single element type and polynomial order from the list of expansions. More... | |
void | ClearGlobalLinSysManager (void) |
Public Attributes | |
LibUtilities::TranspositionSharedPtr | m_transposition |
LibUtilities::CommSharedPtr | m_StripZcomm |
Public Attributes inherited from Nektar::MultiRegions::ExpList | |
ExpansionType | m_expType |
Protected Member Functions | |
DNekBlkMatSharedPtr | GenHomogeneous1DBlockMatrix (Homogeneous1DMatType mattype, CoeffState coeffstate=eLocal) const |
DNekBlkMatSharedPtr | GetHomogeneous1DBlockMatrix (Homogeneous1DMatType mattype, CoeffState coeffstate=eLocal) const |
NekDouble | GetSpecVanVisc (const int k) |
virtual void | v_SetHomo1DSpecVanVisc (Array< OneD, NekDouble > visc) |
virtual int | v_GetNumElmts (void) |
virtual LibUtilities::BasisSharedPtr | v_GetHomogeneousBasis (void) |
virtual void | v_FwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate) |
virtual void | v_FwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_BwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate) |
virtual void | v_BwdTrans_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_IProductWRTBase (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate) |
virtual void | v_IProductWRTBase_IterPerExp (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual std::vector < LibUtilities::FieldDefinitionsSharedPtr > | v_GetFieldDefinitions (void) |
virtual void | v_GetFieldDefinitions (std::vector< LibUtilities::FieldDefinitionsSharedPtr > &fielddef) |
virtual void | v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata) |
virtual void | v_AppendFieldData (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, Array< OneD, NekDouble > &coeffs) |
virtual void | v_ExtractDataToCoeffs (LibUtilities::FieldDefinitionsSharedPtr &fielddef, std::vector< NekDouble > &fielddata, std::string &field, Array< OneD, NekDouble > &coeffs) |
Extract data from raw field data into expansion list. More... | |
virtual void | v_ExtractCoeffsToCoeffs (const boost::shared_ptr< ExpList > &fromExpList, const Array< OneD, const NekDouble > &fromCoeffs, Array< OneD, NekDouble > &toCoeffs) |
virtual void | v_WriteVtkPieceData (std::ostream &outfile, int expansion, std::string var) |
virtual void | v_PhysInterp1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_PhysGalerkinProjection1DScaled (const NekDouble scale, const Array< OneD, NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_HomogeneousFwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
virtual void | v_HomogeneousBwdTrans (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal, bool Shuff=true, bool UnShuff=true) |
virtual void | v_DealiasedProd (const Array< OneD, NekDouble > &inarray1, const Array< OneD, NekDouble > &inarray2, Array< OneD, NekDouble > &outarray, CoeffState coeffstate=eLocal) |
virtual void | v_DealiasedDotProd (const Array< OneD, Array< OneD, NekDouble > > &inarray1, const Array< OneD, Array< OneD, NekDouble > > &inarray2, Array< OneD, Array< OneD, NekDouble > > &outarray, CoeffState coeffstate=eLocal) |
virtual void | v_PhysDeriv (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d0, Array< OneD, NekDouble > &out_d1, Array< OneD, NekDouble > &out_d2) |
virtual void | v_PhysDeriv (Direction edir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
virtual LibUtilities::TranspositionSharedPtr | v_GetTransposition (void) |
virtual Array< OneD, const unsigned int > | v_GetZIDs (void) |
virtual ExpListSharedPtr & | v_GetPlane (int n) |
virtual NekDouble | v_GetHomoLen (void) |
Protected Member Functions inherited from Nektar::MultiRegions::ExpList | |
void | SetCoeffPhysOffsets () |
Definition of the total number of degrees of freedom and quadrature points and offsets to access data. More... | |
boost::shared_ptr< DNekMat > | GenGlobalMatrixFull (const GlobalLinSysKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap) |
const DNekScalBlkMatSharedPtr | GenBlockMatrix (const GlobalMatrixKey &gkey) |
This function assembles the block diagonal matrix of local matrices of the type mtype. More... | |
const DNekScalBlkMatSharedPtr & | GetBlockMatrix (const GlobalMatrixKey &gkey) |
void | MultiplyByBlockMatrix (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
boost::shared_ptr< GlobalMatrix > | GenGlobalMatrix (const GlobalMatrixKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap) |
Generates a global matrix from the given key and map. More... | |
void | GlobalEigenSystem (const boost::shared_ptr< DNekMat > &Gmat, Array< OneD, NekDouble > &EigValsReal, Array< OneD, NekDouble > &EigValsImag, Array< OneD, NekDouble > &EigVecs=NullNekDouble1DArray) |
boost::shared_ptr< GlobalLinSys > | GenGlobalLinSys (const GlobalLinSysKey &mkey, const boost::shared_ptr< AssemblyMapCG > &locToGloMap) |
This operation constructs the global linear system of type mkey. More... | |
boost::shared_ptr< GlobalLinSys > | GenGlobalBndLinSys (const GlobalLinSysKey &mkey, const AssemblyMapSharedPtr &locToGloMap) |
Generate a GlobalLinSys from information provided by the key "mkey" and the mapping provided in LocToGloBaseMap. More... | |
void | ReadGlobalOptimizationParameters () |
virtual const Array< OneD, const boost::shared_ptr < ExpList > > & | v_GetBndCondExpansions (void) |
virtual boost::shared_ptr < ExpList > & | v_UpdateBndCondExpansion (int i) |
virtual void | v_Upwind (const Array< OneD, const Array< OneD, NekDouble > > &Vec, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
virtual void | v_Upwind (const Array< OneD, const NekDouble > &Vn, const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &Upwind) |
virtual boost::shared_ptr < ExpList > & | v_GetTrace () |
virtual boost::shared_ptr < AssemblyMapDG > & | v_GetTraceMap () |
virtual const Array< OneD, const int > & | v_GetTraceBndMap () |
virtual void | v_GetNormals (Array< OneD, Array< OneD, NekDouble > > &normals) |
virtual void | v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fx, const Array< OneD, const NekDouble > &Fy, Array< OneD, NekDouble > &outarray) |
virtual void | v_AddTraceIntegral (const Array< OneD, const NekDouble > &Fn, Array< OneD, NekDouble > &outarray) |
virtual void | v_AddFwdBwdTraceIntegral (const Array< OneD, const NekDouble > &Fwd, const Array< OneD, const NekDouble > &Bwd, Array< OneD, NekDouble > &outarray) |
virtual void | v_GetFwdBwdTracePhys (Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
virtual void | v_GetFwdBwdTracePhys (const Array< OneD, const NekDouble > &field, Array< OneD, NekDouble > &Fwd, Array< OneD, NekDouble > &Bwd) |
virtual const std::vector< bool > & | v_GetLeftAdjacentFaces (void) const |
virtual void | v_ExtractTracePhys (Array< OneD, NekDouble > &outarray) |
virtual void | v_ExtractTracePhys (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_MultiplyByInvMassMatrix (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate) |
virtual void | v_HelmSolve (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const FlagList &flags, const StdRegions::ConstFactorMap &factors, const StdRegions::VarCoeffMap &varcoeff, const Array< OneD, const NekDouble > &dirForcing, const bool PhysSpaceForcing) |
virtual void | v_LinearAdvectionDiffusionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray) |
virtual void | v_LinearAdvectionReactionSolve (const Array< OneD, Array< OneD, NekDouble > > &velocity, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, const NekDouble lambda, CoeffState coeffstate=eLocal, const Array< OneD, const NekDouble > &dirForcing=NullNekDouble1DArray) |
virtual void | v_ImposeDirichletConditions (Array< OneD, NekDouble > &outarray) |
virtual void | v_FillBndCondFromField () |
virtual void | v_FillBndCondFromField (const int nreg) |
virtual void | v_Reset () |
Reset geometry information, metrics, matrix managers and geometry information. More... | |
virtual void | v_LocalToGlobal (bool UseComm) |
virtual void | v_LocalToGlobal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, bool UseComm) |
virtual void | v_GlobalToLocal (void) |
virtual void | v_GlobalToLocal (const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray) |
virtual void | v_SmoothField (Array< OneD, NekDouble > &field) |
virtual void | v_GeneralMatrixOp (const GlobalMatrixKey &gkey, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &outarray, CoeffState coeffstate) |
virtual void | v_GetCoords (Array< OneD, NekDouble > &coord_0, Array< OneD, NekDouble > &coord_1, Array< OneD, NekDouble > &coord_2=NullNekDouble1DArray) |
virtual void | v_PhysDeriv (const int dir, const Array< OneD, const NekDouble > &inarray, Array< OneD, NekDouble > &out_d) |
virtual void | v_CurlCurl (Array< OneD, Array< OneD, NekDouble > > &Vel, Array< OneD, Array< OneD, NekDouble > > &Q) |
virtual void | v_GetBCValues (Array< OneD, NekDouble > &BndVals, const Array< OneD, NekDouble > &TotField, int BndID) |
virtual void | v_NormVectorIProductWRTBase (Array< OneD, const NekDouble > &V1, Array< OneD, const NekDouble > &V2, Array< OneD, NekDouble > &outarray, int BndID) |
virtual void | v_NormVectorIProductWRTBase (Array< OneD, Array< OneD, NekDouble > > &V, Array< OneD, NekDouble > &outarray) |
virtual void | v_SetUpPhysNormals () |
virtual void | v_GetBoundaryToElmtMap (Array< OneD, int > &ElmtID, Array< OneD, int > &EdgeID) |
virtual void | v_GetBndElmtExpansion (int i, boost::shared_ptr< ExpList > &result, const bool DeclareCoeffPhysArrays) |
virtual void | v_ExtractElmtToBndPhys (int i, Array< OneD, NekDouble > &elmt, Array< OneD, NekDouble > &boundary) |
virtual void | v_ExtractPhysToBndElmt (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bndElmt) |
virtual void | v_ExtractPhysToBnd (int i, const Array< OneD, const NekDouble > &phys, Array< OneD, NekDouble > &bnd) |
virtual void | v_GetBoundaryNormals (int i, Array< OneD, Array< OneD, NekDouble > > &normals) |
virtual void | v_ReadGlobalOptimizationParameters () |
virtual void | v_WriteTecplotHeader (std::ostream &outfile, std::string var="") |
virtual void | v_WriteTecplotZone (std::ostream &outfile, int expansion) |
virtual void | v_WriteTecplotField (std::ostream &outfile, int expansion) |
virtual void | v_WriteTecplotConnectivity (std::ostream &outfile, int expansion) |
virtual void | v_WriteVtkPieceHeader (std::ostream &outfile, int expansion, int istrip) |
virtual NekDouble | v_L2 (const Array< OneD, const NekDouble > &phys, const Array< OneD, const NekDouble > &soln=NullNekDouble1DArray) |
virtual NekDouble | v_Integral (const Array< OneD, const NekDouble > &inarray) |
virtual Array< OneD, const NekDouble > | v_HomogeneousEnergy (void) |
virtual Array< OneD, const unsigned int > | v_GetYIDs (void) |
virtual void | v_ClearGlobalLinSysManager (void) |
void | ExtractFileBCs (const std::string &fileName, LibUtilities::CommSharedPtr comm, const std::string &varName, const boost::shared_ptr< ExpList > locExpList) |
Protected Attributes | |
bool | m_useFFT |
FFT variables. More... | |
LibUtilities::NektarFFTSharedPtr | m_FFT |
LibUtilities::NektarFFTSharedPtr | m_FFT_deal |
Array< OneD, NekDouble > | m_tmpIN |
Array< OneD, NekDouble > | m_tmpOUT |
LibUtilities::BasisSharedPtr | m_homogeneousBasis |
Definition of the total number of degrees of freedom and quadrature points. Sets up the storage for m_coeff and m_phys. More... | |
NekDouble | m_lhom |
Width of homogeneous direction. More... | |
Homo1DBlockMatrixMapShPtr | m_homogeneous1DBlockMat |
Array< OneD, ExpListSharedPtr > | m_planes |
boost::unordered_map< int, int > | m_zIdToPlane |
Protected Attributes inherited from Nektar::MultiRegions::ExpList | |
LibUtilities::CommSharedPtr | m_comm |
Communicator. More... | |
LibUtilities::SessionReaderSharedPtr | m_session |
Session. More... | |
SpatialDomains::MeshGraphSharedPtr | m_graph |
Mesh associated with this expansion list. More... | |
int | m_ncoeffs |
The total number of local degrees of freedom. m_ncoeffs . More... | |
int | m_npoints |
Array< OneD, NekDouble > | m_coeffs |
Concatenation of all local expansion coefficients. More... | |
Array< OneD, NekDouble > | m_phys |
The global expansion evaluated at the quadrature points. More... | |
bool | m_physState |
The state of the array m_phys. More... | |
boost::shared_ptr < LocalRegions::ExpansionVector > | m_exp |
The list of local expansions. More... | |
Collections::CollectionVector | m_collections |
std::vector< int > | m_coll_coeff_offset |
Offset of elemental data into the array m_coeffs. More... | |
std::vector< int > | m_coll_phys_offset |
Offset of elemental data into the array m_phys. More... | |
Array< OneD, int > | m_coeff_offset |
Offset of elemental data into the array m_coeffs. More... | |
Array< OneD, int > | m_phys_offset |
Offset of elemental data into the array m_phys. More... | |
NekOptimize::GlobalOptParamSharedPtr | m_globalOptParam |
BlockMatrixMapShPtr | m_blockMat |
bool | m_WaveSpace |
boost::unordered_map< int, int > | m_elmtToExpId |
Mapping from geometry ID of element to index inside m_exp. More... | |
Private Attributes | |
bool | m_dealiasing |
int | m_padsize |
Array< OneD, NekDouble > | m_specVanVisc |
Spectral vanishing Viscosity coefficient for stabilisation. More... | |
Additional Inherited Members | |
Static Protected Member Functions inherited from Nektar::MultiRegions::ExpList | |
static SpatialDomains::BoundaryConditionShPtr | GetBoundaryCondition (const SpatialDomains::BoundaryConditionCollection &collection, unsigned int index, const std::string &variable) |
Abstraction of a two-dimensional multi-elemental expansion which is merely a collection of local expansions.
Definition at line 77 of file ExpListHomogeneous1D.h.
Nektar::MultiRegions::ExpListHomogeneous1D::ExpListHomogeneous1D | ( | ) |
Default constructor.
Definition at line 50 of file ExpListHomogeneous1D.cpp.
Nektar::MultiRegions::ExpListHomogeneous1D::ExpListHomogeneous1D | ( | const LibUtilities::SessionReaderSharedPtr & | pSession, |
const LibUtilities::BasisKey & | HomoBasis, | ||
const NekDouble | lz, | ||
const bool | useFFT, | ||
const bool | dealiasing | ||
) |
Definition at line 58 of file ExpListHomogeneous1D.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), ASSERTL0, ASSERTL2, Nektar::LibUtilities::BasisManager(), Nektar::LibUtilities::NekFactory< tKey, tBase, >::CreateInstance(), Nektar::LibUtilities::eFourierHalfModeIm, Nektar::LibUtilities::eFourierHalfModeRe, Nektar::LibUtilities::GetNektarFFTFactory(), Nektar::MultiRegions::ExpList::m_comm, m_dealiasing, m_FFT, m_FFT_deal, m_homogeneousBasis, m_padsize, m_planes, Nektar::MultiRegions::ExpList::m_session, m_StripZcomm, m_transposition, m_useFFT, and Nektar::LibUtilities::NullBasisKey().
Nektar::MultiRegions::ExpListHomogeneous1D::ExpListHomogeneous1D | ( | const ExpListHomogeneous1D & | In | ) |
Copy constructor.
In | ExpListHomogeneous1D object to copy. |
Definition at line 130 of file ExpListHomogeneous1D.cpp.
References m_planes.
Nektar::MultiRegions::ExpListHomogeneous1D::ExpListHomogeneous1D | ( | const ExpListHomogeneous1D & | In, |
const std::vector< unsigned int > & | eIDs | ||
) |
Definition at line 147 of file ExpListHomogeneous1D.cpp.
References m_planes.
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protected |
Definition at line 753 of file ExpListHomogeneous1D.cpp.
References Nektar::MemoryManager< DataType >::AllocateSharedPtr(), Nektar::MultiRegions::eBackwardsCoeffSpace1D, Nektar::StdRegions::eBwdTrans, Nektar::eDIAGONAL, Nektar::MultiRegions::eForwardsCoeffSpace1D, Nektar::MultiRegions::eForwardsPhysSpace1D, Nektar::LibUtilities::eFourierHalfModeIm, Nektar::LibUtilities::eFourierHalfModeRe, Nektar::StdRegions::eFwdTrans, Nektar::MultiRegions::ExpList::m_comm, m_homogeneousBasis, and m_planes.
Referenced by GetHomogeneous1DBlockMatrix().
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protected |
Definition at line 737 of file ExpListHomogeneous1D.cpp.
References GenHomogeneous1DBlockMatrix(), Nektar::iterator, and m_homogeneous1DBlockMat.
Referenced by Homogeneous1DTrans().
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inline |
Definition at line 115 of file ExpListHomogeneous1D.h.
References m_homogeneousBasis.
Referenced by v_GetHomogeneousBasis().
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Definition at line 129 of file ExpListHomogeneous1D.h.
References m_planes.
Referenced by v_GetPlane().
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Definition at line 162 of file ExpListHomogeneous1D.h.
References m_specVanVisc.
Referenced by Nektar::MultiRegions::ContField3DHomogeneous1D::v_HelmSolve(), and Nektar::MultiRegions::DisContField3DHomogeneous1D::v_HelmSolve().
void Nektar::MultiRegions::ExpListHomogeneous1D::Homogeneous1DTrans | ( | const Array< OneD, const NekDouble > & | inarray, |
Array< OneD, NekDouble > & | outarray, | ||
bool | IsForwards, | ||
CoeffState | coeffstate = eLocal , |
||
bool | Shuff = true , |
||
bool | UnShuff = true |
||
) |
Homogeneous transform Bwd/Fwd (MVM and FFT)
Definition at line 604 of file ExpListHomogeneous1D.cpp.
References Nektar::MultiRegions::eBackwardsCoeffSpace1D, Nektar::MultiRegions::eBackwardsPhysSpace1D, Nektar::MultiRegions::eForwardsCoeffSpace1D, Nektar::MultiRegions::eForwardsPhysSpace1D, Nektar::eWrapper, Nektar::LibUtilities::eXYtoZ, Nektar::LibUtilities::eZtoXY, GetHomogeneous1DBlockMatrix(), Nektar::MultiRegions::ExpList::m_comm, m_FFT, m_homogeneousBasis, Nektar::MultiRegions::ExpList::m_npoints, m_planes, Nektar::MultiRegions::ExpList::m_session, m_StripZcomm, m_tmpIN, m_tmpOUT, m_transposition, m_useFFT, and Vmath::Vcopy().
Referenced by v_HomogeneousBwdTrans(), and v_HomogeneousFwdTrans().
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inline |
Definition at line 294 of file ExpListHomogeneous1D.h.
References v_HomogeneousBwdTrans().
Referenced by v_BwdTrans(), v_BwdTrans_IterPerExp(), v_DealiasedDotProd(), v_DealiasedProd(), and v_PhysDeriv().
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inline |
Definition at line 285 of file ExpListHomogeneous1D.h.
References v_HomogeneousFwdTrans().
Referenced by v_DealiasedDotProd(), v_DealiasedProd(), v_FwdTrans(), v_FwdTrans_IterPerExp(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::DisContField3DHomogeneous1D::v_HelmSolve(), v_IProductWRTBase(), v_IProductWRTBase_IterPerExp(), and v_PhysDeriv().
void Nektar::MultiRegions::ExpListHomogeneous1D::PhysDeriv | ( | const Array< OneD, const NekDouble > & | inarray, |
Array< OneD, NekDouble > & | out_d0, | ||
Array< OneD, NekDouble > & | out_d1, | ||
Array< OneD, NekDouble > & | out_d2 | ||
) |
Definition at line 1415 of file ExpListHomogeneous1D.cpp.
References v_PhysDeriv().
void Nektar::MultiRegions::ExpListHomogeneous1D::PhysDeriv | ( | Direction | edir, |
const Array< OneD, const NekDouble > & | inarray, | ||
Array< OneD, NekDouble > & | out_d | ||
) |
Definition at line 1424 of file ExpListHomogeneous1D.cpp.
References v_PhysDeriv().
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 953 of file ExpListHomogeneous1D.cpp.
References Nektar::MultiRegions::ExpList::m_coeffs.
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This routine appends the data from the expansion list into the output format where each element is given by looping over its Fourier modes where as data in the expandion is stored with all consecutive elements and then the Fourier modes
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 926 of file ExpListHomogeneous1D.cpp.
References Nektar::MultiRegions::ExpList::m_coeff_offset, Nektar::MultiRegions::ExpList::m_elmtToExpId, and m_planes.
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Backward transform
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 508 of file ExpListHomogeneous1D.cpp.
References HomogeneousBwdTrans(), m_planes, and Nektar::MultiRegions::ExpList::m_WaveSpace.
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Backward transform element by element
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 529 of file ExpListHomogeneous1D.cpp.
References HomogeneousBwdTrans(), m_planes, and Nektar::MultiRegions::ExpList::m_WaveSpace.
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protectedvirtual |
Dealiasing routine for dot product
inarray1 | First term of the product with dimension ndim (e.g. U) |
inarray2 | Second term of the product with dimension ndim*nvec (e.g. grad U) |
outarray | Dealiased product with dimension nvec |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 300 of file ExpListHomogeneous1D.cpp.
References ASSERTL1, Nektar::LibUtilities::eXYtoZ, Nektar::LibUtilities::eZtoXY, HomogeneousBwdTrans(), HomogeneousFwdTrans(), Nektar::MultiRegions::ExpList::m_comm, m_FFT_deal, m_homogeneousBasis, m_padsize, m_planes, Nektar::MultiRegions::ExpList::m_session, m_StripZcomm, m_transposition, Nektar::MultiRegions::ExpList::m_WaveSpace, Vmath::Vcopy(), Vmath::Vvtvp(), and Vmath::Zero().
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Dealiasing routine
inarray1 | First term of the product |
inarray2 | Second term of the product |
outarray | Dealiased product |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 198 of file ExpListHomogeneous1D.cpp.
References Nektar::LibUtilities::eXYtoZ, Nektar::LibUtilities::eZtoXY, HomogeneousBwdTrans(), HomogeneousFwdTrans(), Nektar::MultiRegions::ExpList::m_comm, m_FFT_deal, m_homogeneousBasis, m_padsize, m_planes, Nektar::MultiRegions::ExpList::m_session, m_StripZcomm, m_transposition, Nektar::MultiRegions::ExpList::m_WaveSpace, Vmath::Vcopy(), and Vmath::Vmul().
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1076 of file ExpListHomogeneous1D.cpp.
References m_planes.
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protectedvirtual |
Extract data from raw field data into expansion list.
fielddef | Field definitions. |
fielddata | Data for associated field. |
field | Field variable name. |
coeffs | Resulting coefficient array. |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 959 of file ExpListHomogeneous1D.cpp.
References Nektar::LibUtilities::GetNumberOfCoefficients(), Nektar::iterator, Nektar::MultiRegions::ExpList::m_coeff_offset, Nektar::MultiRegions::ExpList::m_elmtToExpId, Nektar::MultiRegions::ExpList::m_exp, m_planes, m_transposition, m_zIdToPlane, and Vmath::Vcopy().
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protectedvirtual |
Forward transform
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 465 of file ExpListHomogeneous1D.cpp.
References HomogeneousFwdTrans(), m_planes, and Nektar::MultiRegions::ExpList::m_WaveSpace.
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Forward transform element by element
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 487 of file ExpListHomogeneous1D.cpp.
References HomogeneousFwdTrans(), m_planes, and Nektar::MultiRegions::ExpList::m_WaveSpace.
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 845 of file ExpListHomogeneous1D.cpp.
References Nektar::LibUtilities::eFourierSingleMode, m_homogeneousBasis, m_lhom, m_planes, Nektar::MultiRegions::ExpList::m_session, and m_transposition.
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protectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 884 of file ExpListHomogeneous1D.cpp.
References Nektar::LibUtilities::eFourierSingleMode, m_homogeneousBasis, m_lhom, m_planes, Nektar::MultiRegions::ExpList::m_session, and m_transposition.
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 185 of file ExpListHomogeneous1D.h.
References GetHomogeneousBasis().
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1436 of file ExpListHomogeneous1D.cpp.
References m_lhom.
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 180 of file ExpListHomogeneous1D.h.
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inlineprotectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 268 of file ExpListHomogeneous1D.h.
References GetPlane().
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protectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1431 of file ExpListHomogeneous1D.cpp.
References m_transposition.
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protectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1441 of file ExpListHomogeneous1D.cpp.
References m_transposition.
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protectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 181 of file ExpListHomogeneous1D.cpp.
References Homogeneous1DTrans().
Referenced by HomogeneousBwdTrans().
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protectedvirtual |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 171 of file ExpListHomogeneous1D.cpp.
References Homogeneous1DTrans().
Referenced by HomogeneousFwdTrans().
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Inner product
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 550 of file ExpListHomogeneous1D.cpp.
References HomogeneousFwdTrans(), m_planes, and Nektar::MultiRegions::ExpList::m_WaveSpace.
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Inner product element by element
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 577 of file ExpListHomogeneous1D.cpp.
References HomogeneousFwdTrans(), m_planes, and Nektar::MultiRegions::ExpList::m_WaveSpace.
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Given a function evaluated at the quadrature points, this function calculates the derivatives , and of the function at the same quadrature points. The local distribution of the quadrature points allows an elemental evaluation of the derivative. This is done by a call to the function StdRegions::StdExpansion::PhysDeriv.
inarray | An array of size containing the values of the function at the quadrature points . |
out_d0 | The discrete evaluation of the derivative will be stored in this array of size . |
out_d1 | The discrete evaluation of the derivative will be stored in this array of size . Note that if no memory is allocated for out_d1, the derivative will not be calculated. |
out_d2 | The discrete evaluation of the derivative will be stored in this array of size . Note that if no memory is allocated for out_d2, the derivative will not be calculated. |
Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1193 of file ExpListHomogeneous1D.cpp.
References ASSERTL0, Nektar::LibUtilities::eFourier, Nektar::LibUtilities::eFourierHalfModeIm, Nektar::LibUtilities::eFourierHalfModeRe, Nektar::LibUtilities::eFourierSingleMode, Nektar::LibUtilities::eXYtoZ, Nektar::LibUtilities::eZtoXY, HomogeneousBwdTrans(), HomogeneousFwdTrans(), Nektar::MultiRegions::ExpList::m_comm, m_homogeneousBasis, m_lhom, m_planes, Nektar::MultiRegions::ExpList::m_session, m_StripZcomm, m_transposition, Nektar::MultiRegions::ExpList::m_WaveSpace, Nektar::NullNekDouble1DArray, sign, and Vmath::Smul().
Referenced by PhysDeriv().
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1305 of file ExpListHomogeneous1D.cpp.
References ASSERTL0, Nektar::LibUtilities::eFourier, Nektar::LibUtilities::eFourierHalfModeIm, Nektar::LibUtilities::eFourierHalfModeRe, Nektar::LibUtilities::eFourierSingleMode, Nektar::LibUtilities::eXYtoZ, Nektar::LibUtilities::eZtoXY, HomogeneousBwdTrans(), HomogeneousFwdTrans(), Nektar::MultiRegions::ExpList::m_comm, m_homogeneousBasis, m_lhom, m_planes, Nektar::MultiRegions::ExpList::m_session, m_StripZcomm, m_transposition, Nektar::MultiRegions::ExpList::m_WaveSpace, sign, and Vmath::Smul().
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1176 of file ExpListHomogeneous1D.cpp.
References ASSERTL1, and m_planes.
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1157 of file ExpListHomogeneous1D.cpp.
References ASSERTL1, and m_planes.
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 175 of file ExpListHomogeneous1D.h.
References m_specVanVisc.
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Reimplemented from Nektar::MultiRegions::ExpList.
Definition at line 1090 of file ExpListHomogeneous1D.cpp.
References Nektar::LibUtilities::eFourier, Nektar::LibUtilities::eFourierEvenlySpaced, Nektar::NekConstants::kNekZeroTol, m_homogeneousBasis, Nektar::MultiRegions::ExpList::m_phys, Nektar::MultiRegions::ExpList::m_phys_offset, m_planes, and m_StripZcomm.
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Definition at line 278 of file ExpListHomogeneous1D.h.
Referenced by ExpListHomogeneous1D().
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Definition at line 140 of file ExpListHomogeneous1D.h.
Referenced by ExpListHomogeneous1D(), and Homogeneous1DTrans().
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Definition at line 142 of file ExpListHomogeneous1D.h.
Referenced by ExpListHomogeneous1D(), v_DealiasedDotProd(), and v_DealiasedProd().
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Definition at line 152 of file ExpListHomogeneous1D.h.
Referenced by GetHomogeneous1DBlockMatrix().
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Definition of the total number of degrees of freedom and quadrature points. Sets up the storage for m_coeff and m_phys.
Definition at line 150 of file ExpListHomogeneous1D.h.
Referenced by Nektar::MultiRegions::ContField3DHomogeneous1D::ContField3DHomogeneous1D(), Nektar::MultiRegions::DisContField3DHomogeneous1D::EvaluateBoundaryConditions(), ExpListHomogeneous1D(), GenHomogeneous1DBlockMatrix(), Nektar::MultiRegions::ExpList2DHomogeneous1D::GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::GetCoords(), GetHomogeneousBasis(), Homogeneous1DTrans(), v_DealiasedDotProd(), v_DealiasedProd(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_GetCoords(), v_GetFieldDefinitions(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_L2(), v_PhysDeriv(), v_WriteVtkPieceData(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_WriteVtkPieceHeader(), and Nektar::MultiRegions::ExpList3DHomogeneous1D::v_WriteVtkPieceHeader().
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Width of homogeneous direction.
Definition at line 151 of file ExpListHomogeneous1D.h.
Referenced by Nektar::MultiRegions::ContField3DHomogeneous1D::ContField3DHomogeneous1D(), Nektar::MultiRegions::DisContField3DHomogeneous1D::EvaluateBoundaryConditions(), Nektar::MultiRegions::ExpList2DHomogeneous1D::GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::GetCoords(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_GetCoords(), v_GetFieldDefinitions(), v_GetHomoLen(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::DisContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_L2(), and v_PhysDeriv().
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Definition at line 279 of file ExpListHomogeneous1D.h.
Referenced by ExpListHomogeneous1D(), v_DealiasedDotProd(), and v_DealiasedProd().
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Definition at line 153 of file ExpListHomogeneous1D.h.
Referenced by Nektar::MultiRegions::ContField3DHomogeneous1D::ContField3DHomogeneous1D(), Nektar::MultiRegions::DisContField3DHomogeneous1D::DisContField3DHomogeneous1D(), Nektar::MultiRegions::DisContField3DHomogeneous1D::EvaluateBoundaryConditions(), Nektar::MultiRegions::ExpList2DHomogeneous1D::ExpList2DHomogeneous1D(), Nektar::MultiRegions::ExpList3DHomogeneous1D::ExpList3DHomogeneous1D(), ExpListHomogeneous1D(), Nektar::MultiRegions::ExpList3DHomogeneous1D::GenExpList3DHomogeneous1D(), GenHomogeneous1DBlockMatrix(), Nektar::MultiRegions::DisContField3DHomogeneous1D::GetBCValues(), Nektar::MultiRegions::DisContField3DHomogeneous1D::GetBoundaryToElmtMap(), Nektar::MultiRegions::ExpList2DHomogeneous1D::GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::GetCoords(), GetPlane(), Homogeneous1DTrans(), Nektar::MultiRegions::DisContField3DHomogeneous1D::NormVectorIProductWRTBase(), Nektar::MultiRegions::ExpList2DHomogeneous1D::SetCoeffPhys(), Nektar::MultiRegions::ExpList3DHomogeneous1D::SetCoeffPhys(), Nektar::MultiRegions::DisContField3DHomogeneous1D::SetupBoundaryConditions(), Nektar::MultiRegions::DisContField3DHomogeneous1D::SetUpDG(), v_AppendFieldData(), v_BwdTrans(), v_BwdTrans_IterPerExp(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_ClearGlobalLinSysManager(), v_DealiasedDotProd(), v_DealiasedProd(), v_ExtractCoeffsToCoeffs(), v_ExtractDataToCoeffs(), Nektar::MultiRegions::DisContField3DHomogeneous1D::v_ExtractTracePhys(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_FillBndCondFromField(), v_FwdTrans(), v_FwdTrans_IterPerExp(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_GetCoords(), v_GetFieldDefinitions(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_GetNormals(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_GetPeriodicEntities(), Nektar::MultiRegions::DisContField3DHomogeneous1D::v_GetTraceMap(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_GlobalToLocal(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::DisContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_HomogeneousEnergy(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_ImposeDirichletConditions(), v_IProductWRTBase(), v_IProductWRTBase_IterPerExp(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_L2(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_LocalToGlobal(), v_PhysDeriv(), v_PhysGalerkinProjection1DScaled(), v_PhysInterp1DScaled(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_SmoothField(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_WriteTecplotConnectivity(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_WriteTecplotZone(), v_WriteVtkPieceData(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_WriteVtkPieceHeader(), and Nektar::MultiRegions::ExpList3DHomogeneous1D::v_WriteVtkPieceHeader().
Spectral vanishing Viscosity coefficient for stabilisation.
Definition at line 282 of file ExpListHomogeneous1D.h.
Referenced by GetSpecVanVisc(), and v_SetHomo1DSpecVanVisc().
LibUtilities::CommSharedPtr Nektar::MultiRegions::ExpListHomogeneous1D::m_StripZcomm |
Definition at line 135 of file ExpListHomogeneous1D.h.
Referenced by ExpListHomogeneous1D(), Homogeneous1DTrans(), v_DealiasedDotProd(), v_DealiasedProd(), v_PhysDeriv(), and v_WriteVtkPieceData().
Definition at line 144 of file ExpListHomogeneous1D.h.
Referenced by Homogeneous1DTrans().
Definition at line 145 of file ExpListHomogeneous1D.h.
Referenced by Homogeneous1DTrans().
LibUtilities::TranspositionSharedPtr Nektar::MultiRegions::ExpListHomogeneous1D::m_transposition |
Definition at line 134 of file ExpListHomogeneous1D.h.
Referenced by Nektar::MultiRegions::ContField3DHomogeneous1D::ContField3DHomogeneous1D(), Nektar::MultiRegions::DisContField3DHomogeneous1D::EvaluateBoundaryConditions(), ExpListHomogeneous1D(), Nektar::MultiRegions::ExpList2DHomogeneous1D::GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::GetCoords(), Homogeneous1DTrans(), v_DealiasedDotProd(), v_DealiasedProd(), v_ExtractDataToCoeffs(), Nektar::MultiRegions::ExpList2DHomogeneous1D::v_GetCoords(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_GetCoords(), v_GetFieldDefinitions(), v_GetTransposition(), v_GetZIDs(), Nektar::MultiRegions::ContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::DisContField3DHomogeneous1D::v_HelmSolve(), Nektar::MultiRegions::ExpList3DHomogeneous1D::v_L2(), and v_PhysDeriv().
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FFT variables.
Definition at line 139 of file ExpListHomogeneous1D.h.
Referenced by ExpListHomogeneous1D(), Homogeneous1DTrans(), and Nektar::MultiRegions::DisContField3DHomogeneous1D::SetupBoundaryConditions().
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Definition at line 155 of file ExpListHomogeneous1D.h.
Referenced by v_ExtractDataToCoeffs().