StdHexExp.h

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///////////////////////////////////////////////////////////////////////////////
//
// File StdHexExp.h
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Header file for hexahedron routines.
//
///////////////////////////////////////////////////////////////////////////////

#ifndef NEKTAR_LIBRARY_STDREGIONS_STDHEXEXP_H
#define NEKTAR_LIBRARY_STDREGIONS_STDHEXEXP_H

//#include <StdRegions/StdRegions.hpp>
#include <StdRegions/StdExpansion3D.h>
#include <StdRegions/StdRegionsDeclspec.h>

namespace Nektar
{
    namespace StdRegions
    {
        /// Class representing a hexehedral element in reference space.
        class StdHexExp: virtual public StdExpansion3D
        {

        public:
            STD_REGIONS_EXPORT StdHexExp();
            STD_REGIONS_EXPORT StdHexExp(
                    const  LibUtilities::BasisKey &Ba,
                    const  LibUtilities::BasisKey &Bb,
                    const  LibUtilities::BasisKey &Bc);
            STD_REGIONS_EXPORT StdHexExp(const StdHexExp &T);
            STD_REGIONS_EXPORT ~StdHexExp();


        protected:
            //----------------------------
            // Differentiation Methods
            //----------------------------
            STD_REGIONS_EXPORT virtual void v_PhysDeriv(
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &out_d0,
                          Array<OneD, NekDouble> &out_d1,
                          Array<OneD, NekDouble> &out_d2);
            STD_REGIONS_EXPORT virtual void v_PhysDeriv(
                    const int dir,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble>& outarray);
            STD_REGIONS_EXPORT virtual void v_StdPhysDeriv(
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &out_d0,
                          Array<OneD, NekDouble> &out_d1,
                          Array<OneD, NekDouble> &out_d2);
            STD_REGIONS_EXPORT virtual void v_StdPhysDeriv(
                    const int dir,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble>& outarray);

            //---------------------------------------
            // Transforms
            //---------------------------------------
            STD_REGIONS_EXPORT virtual void v_BwdTrans(
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &outarray);

            STD_REGIONS_EXPORT virtual void v_BwdTrans_SumFac(
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &outarray);

            STD_REGIONS_EXPORT virtual void v_BwdTrans_SumFacKernel(
                    const Array<OneD, const NekDouble>& base0,
                    const Array<OneD, const NekDouble>& base1,
                    const Array<OneD, const NekDouble>& base2,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &outarray,
                          Array<OneD, NekDouble> &wsp,
                    bool doCheckCollDir0,
                    bool doCheckCollDir1,
                    bool doCheckCollDir2);

            STD_REGIONS_EXPORT virtual void v_FwdTrans(
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &outarray);


            //---------------------------------------
            // Inner product functions
            //---------------------------------------
            STD_REGIONS_EXPORT virtual void v_IProductWRTBase(
                    const Array<OneD, const NekDouble> &inarray,
                          Array<OneD,       NekDouble> &outarray);

            STD_REGIONS_EXPORT virtual void v_IProductWRTBase_MatOp(
                    const Array<OneD, const NekDouble> &inarray,
                          Array<OneD,       NekDouble> &outarray);

            STD_REGIONS_EXPORT virtual void v_IProductWRTBase_SumFac(
                    const Array<OneD, const NekDouble> &inarray,
                          Array<OneD,       NekDouble> &outarray,
                    bool                                multbyweights = true);

            STD_REGIONS_EXPORT virtual void v_IProductWRTBase_SumFacKernel(
                    const Array<OneD, const NekDouble>& base0,
                    const Array<OneD, const NekDouble>& base1,
                    const Array<OneD, const NekDouble>& base2,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &outarray,
                          Array<OneD, NekDouble> &wsp,
                    bool doCheckCollDir0,
                    bool doCheckCollDir1,
                    bool doCheckCollDir2);

            STD_REGIONS_EXPORT virtual void v_IProductWRTDerivBase(
                    const int dir,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> & outarray);

            STD_REGIONS_EXPORT virtual void v_IProductWRTDerivBase_MatOp(
                    const int dir,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> & outarray);

            STD_REGIONS_EXPORT virtual void v_IProductWRTDerivBase_SumFac(
                    const int dir,
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> & outarray);


            //---------------------------------------
            // Evaluation functions
            //---------------------------------------
            STD_REGIONS_EXPORT virtual void v_LocCoordToLocCollapsed(
                                              const Array<OneD, const NekDouble>& xi,
                                              Array<OneD, NekDouble>& eta);

            STD_REGIONS_EXPORT virtual void v_FillMode(
                    const int mode,
                          Array<OneD, NekDouble> &outarray);


            //---------------------------
            // Helper functions
            //---------------------------
            STD_REGIONS_EXPORT virtual int  v_GetNverts() const;
            STD_REGIONS_EXPORT virtual int  v_GetNedges() const;
            STD_REGIONS_EXPORT virtual int  v_GetNfaces() const;
            STD_REGIONS_EXPORT virtual LibUtilities::ShapeType v_DetShapeType() const;
            STD_REGIONS_EXPORT virtual int  v_NumBndryCoeffs() const;
            STD_REGIONS_EXPORT virtual int  v_NumDGBndryCoeffs() const;
            STD_REGIONS_EXPORT virtual int  v_GetEdgeNcoeffs(const int i) const;
        STD_REGIONS_EXPORT virtual int  v_GetTotalEdgeIntNcoeffs() const;
            STD_REGIONS_EXPORT virtual int  v_GetFaceNcoeffs(const int i) const;
            STD_REGIONS_EXPORT virtual int  v_GetFaceIntNcoeffs(
                    const int i) const;
        STD_REGIONS_EXPORT virtual int  v_GetTotalFaceIntNcoeffs() const;
            STD_REGIONS_EXPORT virtual int  v_GetFaceNumPoints(const int i) const;
            STD_REGIONS_EXPORT virtual LibUtilities::PointsKey v_GetFacePointsKey(
                    const int i, const int j) const;
            STD_REGIONS_EXPORT virtual int  v_CalcNumberOfCoefficients(
                    const std::vector<unsigned int> &nummodes,
                    int &modes_offset);
            STD_REGIONS_EXPORT virtual const LibUtilities::BasisKey 
                    v_DetFaceBasisKey(const int i, const int k) const;
            STD_REGIONS_EXPORT virtual LibUtilities::BasisType v_GetEdgeBasisType(
                    const int i) const;
            STD_REGIONS_EXPORT virtual bool v_IsBoundaryInteriorExpansion();
            STD_REGIONS_EXPORT virtual void v_GetCoords(
                    Array<OneD, NekDouble> &coords_x,
                    Array<OneD, NekDouble> &coords_y,
                    Array<OneD, NekDouble> &coords_z);
            STD_REGIONS_EXPORT virtual void v_GetFaceNumModes(
                    const int                  fid,
                    const Orientation          faceOrient,
                    int &numModes0,
                    int &numModes1);

            //--------------------------
            // Mappings
            //--------------------------
            STD_REGIONS_EXPORT virtual void v_GetFaceToElementMap(
                    const int                  fid,
                    const Orientation          faceOrient,
                    Array<OneD, unsigned int> &maparray,
                    Array<OneD,          int> &signarray,
                    int                        nummodesA = -1,
                    int                        nummodesB = -1);
            STD_REGIONS_EXPORT virtual int  v_GetVertexMap(
                    int                        localVertexId,
                    bool                       useCoeffPacking = false);
            STD_REGIONS_EXPORT virtual void v_GetEdgeInteriorMap(
                    const int                  eid,
                    const Orientation          edgeOrient,
                    Array<OneD, unsigned int> &maparray,
                    Array<OneD, int>          &signarray);
            STD_REGIONS_EXPORT virtual void v_GetFaceInteriorMap(
                    const int                  fid,
                    const Orientation          faceOrient,
                    Array<OneD, unsigned int> &maparray,
                    Array<OneD, int>& signarray);
            STD_REGIONS_EXPORT virtual void v_GetInteriorMap(
                    Array<OneD, unsigned int> &outarray);
            STD_REGIONS_EXPORT virtual void v_GetBoundaryMap(
                    Array<OneD, unsigned int> &outarray);


            //---------------------------------------
            // Wrapper functions
            //---------------------------------------
            STD_REGIONS_EXPORT virtual DNekMatSharedPtr v_GenMatrix(
                    const StdMatrixKey &mkey);
            STD_REGIONS_EXPORT virtual DNekMatSharedPtr v_CreateStdMatrix(
                    const StdMatrixKey &mkey);


            //---------------------------------------
            // Operator evaluation functions
            //---------------------------------------
            STD_REGIONS_EXPORT virtual void v_MassMatrixOp(
                    const Array<OneD, const NekDouble> &inarray,
                    Array<OneD,NekDouble> &outarray,
                    const StdMatrixKey &mkey);

            STD_REGIONS_EXPORT virtual void v_LaplacianMatrixOp(
                    const Array<OneD, const NekDouble> &inarray,
                    Array<OneD,NekDouble> &outarray,
                    const StdMatrixKey &mkey);

            STD_REGIONS_EXPORT virtual void v_LaplacianMatrixOp(
                    const int k1,
                    const int k2,
                    const Array<OneD, const NekDouble> &inarray,
                    Array<OneD,NekDouble> &outarray,
                    const StdMatrixKey &mkey);

            STD_REGIONS_EXPORT virtual void v_WeakDerivMatrixOp(
                    const int i,
                    const Array<OneD, const NekDouble> &inarray,
                    Array<OneD,NekDouble> &outarray,
                    const StdMatrixKey &mkey);
            
            STD_REGIONS_EXPORT virtual void v_HelmholtzMatrixOp(
                    const Array<OneD, const NekDouble> &inarray,
                    Array<OneD,NekDouble> &outarray,
                    const StdMatrixKey &mkey);

            STD_REGIONS_EXPORT virtual void v_GeneralMatrixOp_MatOp(
                    const Array<OneD, const NekDouble> &inarray,
                          Array<OneD,NekDouble> &outarray,
                    const StdMatrixKey &mkey);

            STD_REGIONS_EXPORT virtual void v_MultiplyByStdQuadratureMetric(
                    const Array<OneD, const NekDouble>& inarray,
                          Array<OneD, NekDouble> &outarray);
            
            STD_REGIONS_EXPORT virtual void v_SVVLaplacianFilter(Array<OneD, NekDouble> &array,const StdMatrixKey &mkey);

            STD_REGIONS_EXPORT virtual void v_ExponentialFilter(
                          Array<OneD, NekDouble> &array,
                    const NekDouble        alpha,
                    const NekDouble        exponent,
                    const NekDouble        cutoff);
        };

        typedef std::shared_ptr<StdHexExp> StdHexExpSharedPtr;

    }
}

#endif