Nektar::FieldUtils::ProcessScalGrad Class Reference

This processing module calculates the scalar gradient field and writes it to a surface output file. More...

#include <ProcessScalGrad.h>

Inheritance diagram for Nektar::FieldUtils::ProcessScalGrad:

Public Member Functions
	ProcessScalGrad (FieldSharedPtr f)
virtual	~ProcessScalGrad ()
Public Member Functions inherited from Nektar::FieldUtils::ProcessBoundaryExtract
	ProcessBoundaryExtract (FieldSharedPtr f)
virtual	~ProcessBoundaryExtract ()
Public Member Functions inherited from Nektar::FieldUtils::ProcessModule
	ProcessModule ()
	ProcessModule (FieldSharedPtr p_f)
Public Member Functions inherited from Nektar::FieldUtils::Module
FIELD_UTILS_EXPORT	Module (FieldSharedPtr p_f)
virtual	~Module ()=default
void	Process (po::variables_map &vm)
std::string	GetModuleName ()
std::string	GetModuleDescription ()
const ConfigOption &	GetConfigOption (const std::string &key) const
ModulePriority	GetModulePriority ()
FIELD_UTILS_EXPORT void	RegisterConfig (std::string key, std::string value="")
	Register a configuration option with a module. More...
FIELD_UTILS_EXPORT void	PrintConfig ()
	Print out all configuration options for a module. More...
FIELD_UTILS_EXPORT void	SetDefaults ()
	Sets default configuration options for those which have not been set. More...
FIELD_UTILS_EXPORT void	AddFile (std::string fileType, std::string fileName)
FIELD_UTILS_EXPORT void	EvaluateTriFieldAtEquiSpacedPts (LocalRegions::ExpansionSharedPtr &exp, const Array< OneD, const NekDouble > &infield, Array< OneD, NekDouble > &outfield)

Static Public Member Functions
static std::shared_ptr< Module >	create (FieldSharedPtr f)
	Creates an instance of this class. More...
Static Public Member Functions inherited from Nektar::FieldUtils::ProcessBoundaryExtract
static std::shared_ptr< Module >	create (FieldSharedPtr f)
	Creates an instance of this class. More...

Static Public Attributes
static ModuleKey	className
Static Public Attributes inherited from Nektar::FieldUtils::ProcessBoundaryExtract
static ModuleKey	className

Protected Member Functions
virtual void	v_Process (po::variables_map &vm) override
	Write mesh to output file. More...
virtual std::string	v_GetModuleName () override
virtual std::string	v_GetModuleDescription () override
Protected Member Functions inherited from Nektar::FieldUtils::ProcessBoundaryExtract
virtual void	v_Process (po::variables_map &vm) override
virtual std::string	v_GetModuleName () override
virtual std::string	v_GetModuleDescription () override
virtual ModulePriority	v_GetModulePriority () override
Protected Member Functions inherited from Nektar::FieldUtils::Module
	Module ()
virtual void	v_Process (po::variables_map &vm)
virtual std::string	v_GetModuleName ()
virtual std::string	v_GetModuleDescription ()
virtual ModulePriority	v_GetModulePriority ()

Additional Inherited Members
Public Attributes inherited from Nektar::FieldUtils::Module
FieldSharedPtr	m_f
	Field object. More...
Protected Attributes inherited from Nektar::FieldUtils::Module
std::map< std::string, ConfigOption >	m_config
	List of configuration values. More...
std::set< std::string >	m_allowedFiles
	List of allowed file formats. More...

Detailed Description

This processing module calculates the scalar gradient field and writes it to a surface output file.

Definition at line 49 of file ProcessScalGrad.h.

Constructor & Destructor Documentation

ProcessScalGrad()

Nektar::FieldUtils::ProcessScalGrad::ProcessScalGrad

(

FieldSharedPtr

f

)

Definition at line 54 of file ProcessScalGrad.cpp.

                                                 : ProcessBoundaryExtract(f)
{
}

~ProcessScalGrad()

Nektar::FieldUtils::ProcessScalGrad::~ProcessScalGrad ( )

virtual

Definition at line 58 of file ProcessScalGrad.cpp.

{
}

Member Function Documentation

create()

static std::shared_ptr< Module > Nektar::FieldUtils::ProcessScalGrad::create ( FieldSharedPtr  f )

inlinestatic

Creates an instance of this class.

Definition at line 53 of file ProcessScalGrad.h.

    {
        return MemoryManager<ProcessScalGrad>::AllocateSharedPtr(f);
    }

References Nektar::MemoryManager< DataType >::AllocateSharedPtr().

v_GetModuleDescription()

virtual std::string Nektar::FieldUtils::ProcessScalGrad::v_GetModuleDescription ( )

inlineoverrideprotectedvirtual

Reimplemented from Nektar::FieldUtils::ProcessBoundaryExtract.

Definition at line 71 of file ProcessScalGrad.h.

    {
        return "Calculating scalar gradient";
    }

v_GetModuleName()

virtual std::string Nektar::FieldUtils::ProcessScalGrad::v_GetModuleName ( )

inlineoverrideprotectedvirtual

Reimplemented from Nektar::FieldUtils::ProcessBoundaryExtract.

Definition at line 66 of file ProcessScalGrad.h.

    {
        return "ProcessScalGrad";
    }

v_Process()

void Nektar::FieldUtils::ProcessScalGrad::v_Process ( po::variables_map &  vm )

overrideprotectedvirtual

Write mesh to output file.

Reimplemented from Nektar::FieldUtils::ProcessBoundaryExtract.

Definition at line 62 of file ProcessScalGrad.cpp.

{
    ProcessBoundaryExtract::v_Process(vm);
 
    int i, j, k;
 
    int spacedim = m_f->m_graph->GetSpaceDimension();
    if ((m_f->m_numHomogeneousDir) == 1 || (m_f->m_numHomogeneousDir) == 2)
    {
        spacedim = 3;
    }
 
    int nfields = m_f->m_variables.size();
 
    string var;
    for (i = 0; i < nfields; i++)
    {
        var = m_f->m_variables[i];
        stringstream filename;
        filename << var << "_scalar_gradient";
        filename >> var;
        m_f->m_variables[i] = var;
    }
    if (m_f->m_exp[0]->GetNumElmts() == 0)
    {
        return;
    }
 
    if (spacedim == 1)
    {
        ASSERTL0(false, "Error: scalar gradient for a 1D problem cannot "
                        "be computed");
    }
 
    int ngrad = spacedim;
    int n, cnt, elmtid, nq, offset, boundary, nfq;
    int npoints = m_f->m_exp[0]->GetNpoints();
    Array<OneD, NekDouble> scalar;
    Array<OneD, Array<OneD, NekDouble>> grad(ngrad), fgrad(ngrad),
        outfield(nfields);
 
    LocalRegions::ExpansionSharedPtr elmt;
    StdRegions::StdExpansion2DSharedPtr bc;
    Array<OneD, int> BoundarytoElmtID, BoundarytoTraceID;
    Array<OneD, Array<OneD, MultiRegions::ExpListSharedPtr>> BndExp(nfields);
 
    m_f->m_exp[0]->GetBoundaryToElmtMap(BoundarytoElmtID, BoundarytoTraceID);
 
    for (i = 0; i < nfields; i++)
    {
        BndExp[i]   = m_f->m_exp[i]->GetBndCondExpansions();
        outfield[i] = Array<OneD, NekDouble>(npoints);
    }
 
    // loop over the types of boundary conditions
    for (cnt = n = 0; n < BndExp[0].size(); ++n)
    {
        bool doneBnd = false;
        // identify if boundary has been defined
        for (int b = 0; b < m_f->m_bndRegionsToWrite.size(); ++b)
        {
            if (n == m_f->m_bndRegionsToWrite[b])
            {
                doneBnd = true;
                for (i = 0; i < BndExp[0][n]->GetExpSize(); ++i, cnt++)
                {
                    // find element and face of this expansion.
                    elmtid = BoundarytoElmtID[cnt];
                    elmt   = m_f->m_exp[0]->GetExp(elmtid);
                    nq     = elmt->GetTotPoints();
                    offset = m_f->m_exp[0]->GetPhys_Offset(elmtid);
 
                    // Initialise local arrays for the velocity
                    // gradients, and stress components size of total
                    // number of quadrature points for each element
                    // (hence local).
                    for (j = 0; j < ngrad; ++j)
                    {
                        grad[j] = Array<OneD, NekDouble>(nq);
                    }
 
                    if (spacedim == 2)
                    {
                        // Not implemented in 2D.
                    }
                    else
                    {
                        for (j = 0; j < nfields; j++)
                        {
                            outfield[j] = BndExp[j][n]->UpdateCoeffs() +
                                          BndExp[j][n]->GetCoeff_Offset(i);
                        }
 
                        // Get face 2D expansion from element expansion
                        bc = std::dynamic_pointer_cast<
                            StdRegions::StdExpansion2D>(
                            BndExp[0][n]->GetExp(i));
                        nfq = bc->GetTotPoints();
 
                        // identify boundary of element looking at.
                        boundary = BoundarytoTraceID[cnt];
 
                        const LocalRegions::Expansion *lep =
                            dynamic_cast<const LocalRegions::Expansion *>(
                                &(*bc));
 
                        // Get face normals
                        const SpatialDomains::GeomFactorsSharedPtr
                            m_metricinfo = lep->GetMetricInfo();
 
                        const Array<OneD, const Array<OneD, NekDouble>>
                            normals = elmt->GetTraceNormal(boundary);
 
                        // initialise arrays
                        for (j = 0; j < ngrad; ++j)
                        {
                            fgrad[j] = Array<OneD, NekDouble>(nfq);
                        }
                        Array<OneD, NekDouble> gradnorm(nfq);
 
                        for (k = 0; k < nfields; k++)
                        {
                            Vmath::Zero(nfq, gradnorm, 1);
 
                            scalar = m_f->m_exp[k]->GetPhys() + offset;
                            elmt->PhysDeriv(scalar, grad[0], grad[1], grad[2]);
 
                            for (j = 0; j < ngrad; ++j)
                            {
                                elmt->GetTracePhysVals(boundary, bc, grad[j],
                                                       fgrad[j]);
                            }
 
                            // surface curved
                            if (m_metricinfo->GetGtype() ==
                                SpatialDomains::eDeformed)
                            {
                                for (j = 0; j < ngrad; j++)
                                {
                                    Vmath::Vvtvp(nfq, normals[j], 1, fgrad[j],
                                                 1, gradnorm, 1, gradnorm, 1);
                                }
                            }
                            else
                            {
                                for (j = 0; j < ngrad; j++)
                                {
                                    Vmath::Svtvp(nfq, normals[j][0], fgrad[j],
                                                 1, gradnorm, 1, gradnorm, 1);
                                }
                            }
                            bc->FwdTrans(gradnorm, outfield[k]);
                        }
                    }
                }
            }
        }
        if (doneBnd == false)
        {
            cnt += BndExp[0][n]->GetExpSize();
        }
    }
 
    for (j = 0; j < nfields; ++j)
    {
        for (int b = 0; b < m_f->m_bndRegionsToWrite.size(); ++b)
        {
            m_f->m_exp[j]->UpdateBndCondExpansion(m_f->m_bndRegionsToWrite[b]) =
                BndExp[j][m_f->m_bndRegionsToWrite[b]];
        }
    }
}

References ASSERTL0, Nektar::SpatialDomains::eDeformed, Nektar::LocalRegions::Expansion::GetMetricInfo(), Nektar::StdRegions::StdExpansion::GetTotPoints(), Nektar::FieldUtils::Module::m_f, Vmath::Svtvp(), Nektar::FieldUtils::ProcessBoundaryExtract::v_Process(), Vmath::Vvtvp(), and Vmath::Zero().

Member Data Documentation

className

ModuleKey Nektar::FieldUtils::ProcessScalGrad::className

static

Initial value:

=
    GetModuleFactory().RegisterCreatorFunction(
        ModuleKey(eProcessModule, "scalargrad"), ProcessScalGrad::create,
        "Computes scalar gradient field.")

Definition at line 57 of file ProcessScalGrad.h.