AssemblyMapDG.cpp

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///////////////////////////////////////////////////////////////////////////////
//
// File: AssemblyMapDG.cpp
//
// For more information, please see: http://www.nektar.info
//
// The MIT License
//
// Copyright (c) 2006 Division of Applied Mathematics, Brown University (USA),
// Department of Aeronautics, Imperial College London (UK), and Scientific
// Computing and Imaging Institute, University of Utah (USA).
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the "Software"),
// to deal in the Software without restriction, including without limitation
// the rights to use, copy, modify, merge, publish, distribute, sublicense,
// and/or sell copies of the Software, and to permit persons to whom the
// Software is furnished to do so, subject to the following conditions:
//
// The above copyright notice and this permission notice shall be included
// in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
// THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
// DEALINGS IN THE SOFTWARE.
//
// Description: Local to Global Base Class mapping routines
//
///////////////////////////////////////////////////////////////////////////////
 
#include <LibUtilities/BasicUtils/HashUtils.hpp>
#include <LocalRegions/Expansion2D.h>
#include <LocalRegions/Expansion3D.h>
#include <LocalRegions/PointExp.h>
#include <LocalRegions/SegExp.h>
#include <MultiRegions/AssemblyMap/AssemblyCommDG.h>
#include <MultiRegions/AssemblyMap/AssemblyMapDG.h>
#include <MultiRegions/ExpList.h>
 
#include <boost/config.hpp>
#include <boost/core/ignore_unused.hpp>
#include <boost/graph/adjacency_list.hpp>
 
using namespace std;
 
namespace Nektar
{
namespace MultiRegions
{
AssemblyMapDG::AssemblyMapDG() : m_numDirichletBndPhys(0)
{
}
 
AssemblyMapDG::~AssemblyMapDG()
{
}
 
AssemblyMapDG::AssemblyMapDG(
    const LibUtilities::SessionReaderSharedPtr &pSession,
    const SpatialDomains::MeshGraphSharedPtr &graph,
    const ExpListSharedPtr &trace, const ExpList &locExp,
    const Array<OneD, const MultiRegions::ExpListSharedPtr> &bndCondExp,
    const Array<OneD, const SpatialDomains::BoundaryConditionShPtr> &bndCond,
    const PeriodicMap &periodicTrace, const std::string variable)
    : AssemblyMap(pSession, locExp.GetComm(), variable)
{
    boost::ignore_unused(graph);
 
    int i, j, k, cnt, id, id1, gid;
    int order_e   = 0;
    int nTraceExp = trace->GetExpSize();
    int nbnd      = bndCondExp.size();
 
    LocalRegions::ExpansionSharedPtr exp;
    LocalRegions::ExpansionSharedPtr bndExp;
    SpatialDomains::GeometrySharedPtr traceGeom;
 
    const LocalRegions::ExpansionVector expList = *(locExp.GetExp());
    int nel                                     = expList.size();
 
    map<int, int> meshTraceId;
 
    m_signChange = true;
 
    // determine mapping from geometry edges to trace
    for (i = 0; i < nTraceExp; ++i)
    {
        meshTraceId[trace->GetExp(i)->GetGeom()->GetGlobalID()] = i;
    }
 
    // Count total number of trace elements
    cnt = 0;
    for (i = 0; i < nel; ++i)
    {
        cnt += expList[i]->GetNtraces();
    }
 
    Array<OneD, LocalRegions::ExpansionSharedPtr> tracemap(cnt);
    m_elmtToTrace =
        Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr>>(nel);
 
    // set up trace expansions links;
    for (cnt = i = 0; i < nel; ++i)
    {
        m_elmtToTrace[i] = tracemap + cnt;
        exp              = expList[i];
 
        for (j = 0; j < exp->GetNtraces(); ++j)
        {
            id = exp->GetGeom()->GetTid(j);
 
            if (meshTraceId.count(id) > 0)
            {
                m_elmtToTrace[i][j] =
                    trace->GetExp(meshTraceId.find(id)->second);
            }
            else
            {
                ASSERTL0(false, "Failed to find trace map");
            }
        }
 
        cnt += exp->GetNtraces();
    }
 
    // Set up boundary mapping
    cnt = 0;
    for (i = 0; i < nbnd; ++i)
    {
        if (bndCond[i]->GetBoundaryConditionType() == SpatialDomains::ePeriodic)
        {
            continue;
        }
        cnt += bndCondExp[i]->GetExpSize();
    }
 
    set<int> dirTrace;
 
    m_numLocalDirBndCoeffs = 0;
    m_numDirichletBndPhys  = 0;
 
    for (i = 0; i < bndCondExp.size(); ++i)
    {
        for (j = 0; j < bndCondExp[i]->GetExpSize(); ++j)
        {
            bndExp    = bndCondExp[i]->GetExp(j);
            traceGeom = bndExp->GetGeom();
            id        = traceGeom->GetGlobalID();
 
            if (bndCond[i]->GetBoundaryConditionType() ==
                SpatialDomains::eDirichlet)
            {
                m_numLocalDirBndCoeffs += bndExp->GetNcoeffs();
                m_numDirichletBndPhys += bndExp->GetTotPoints();
                dirTrace.insert(id);
            }
        }
    }
 
    // Set up integer mapping array and sign change for each degree of
    // freedom + initialise some more data members.
    m_staticCondLevel           = 0;
    m_lowestStaticCondLevel     = 0;
    m_numPatches                = nel;
    m_numLocalBndCoeffsPerPatch = Array<OneD, unsigned int>(nel);
    m_numLocalIntCoeffsPerPatch = Array<OneD, unsigned int>(nel);
 
    int nbndry = 0;
    for (i = 0; i < nel; ++i) // count number of elements in array
    {
        int BndCoeffs = expList[i]->NumDGBndryCoeffs();
        nbndry += BndCoeffs;
        m_numLocalIntCoeffsPerPatch[i] = 0;
        m_numLocalBndCoeffsPerPatch[i] = (unsigned int)BndCoeffs;
    }
 
    m_numGlobalDirBndCoeffs = m_numLocalDirBndCoeffs;
    m_numLocalBndCoeffs     = nbndry;
    m_numLocalCoeffs        = nbndry;
    m_localToGlobalBndMap   = Array<OneD, int>(nbndry);
    m_localToGlobalBndSign  = Array<OneD, NekDouble>(nbndry, 1);
 
    // Set up array for potential mesh optimsation
    Array<OneD, int> traceElmtGid(nTraceExp, -1);
    int nDir = 0;
    cnt      = 0;
 
    // We are now going to construct a graph of the mesh which can be
    // reordered depending on the type of solver we would like to use.
    typedef boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS>
        BoostGraph;
 
    BoostGraph boostGraphObj;
    int trace_id, trace_id1;
    int dirOffset = 0;
 
    // make trace renumbering map where first solved trace starts
    // at 0 so we can set up graph.
    for (i = 0; i < nTraceExp; ++i)
    {
        id = trace->GetExp(i)->GetGeom()->GetGlobalID();
 
        if (dirTrace.count(id) == 0)
        {
            // Initial put in element ordering (starting from zero) into
            // traceElmtGid
            boost::add_vertex(boostGraphObj);
            traceElmtGid[i] = cnt++;
        }
        else
        {
            // Use existing offset for Dirichlet edges
            traceElmtGid[i] = dirOffset;
            dirOffset += trace->GetExp(i)->GetNcoeffs();
            nDir++;
        }
    }
 
    // Set up boost Graph
    for (i = 0; i < nel; ++i)
    {
        exp = expList[i];
 
        for (j = 0; j < exp->GetNtraces(); ++j)
        {
            // Add trace to boost graph for non-Dirichlet Boundary
            traceGeom = m_elmtToTrace[i][j]->GetGeom();
            id        = traceGeom->GetGlobalID();
            trace_id  = meshTraceId.find(id)->second;
 
            if (dirTrace.count(id) == 0)
            {
                for (k = j + 1; k < exp->GetNtraces(); ++k)
                {
                    traceGeom = m_elmtToTrace[i][k]->GetGeom();
                    id1       = traceGeom->GetGlobalID();
                    trace_id1 = meshTraceId.find(id1)->second;
 
                    if (dirTrace.count(id1) == 0)
                    {
                        boost::add_edge((size_t)traceElmtGid[trace_id],
                                        (size_t)traceElmtGid[trace_id1],
                                        boostGraphObj);
                    }
                }
            }
        }
    }
 
    int nGraphVerts = nTraceExp - nDir;
    Array<OneD, int> perm(nGraphVerts);
    Array<OneD, int> iperm(nGraphVerts);
    Array<OneD, int> vwgts(nGraphVerts);
    BottomUpSubStructuredGraphSharedPtr bottomUpGraph;
 
    for (i = 0; i < nGraphVerts; ++i)
    {
        vwgts[i] = trace->GetExp(i + nDir)->GetNcoeffs();
    }
 
    if (nGraphVerts)
    {
        switch (m_solnType)
        {
            case eDirectFullMatrix:
            case eIterativeFull:
            case eIterativeStaticCond:
            case eXxtFullMatrix:
            case eXxtStaticCond:
            case ePETScFullMatrix:
            case ePETScStaticCond:
            {
                NoReordering(boostGraphObj, perm, iperm);
                break;
            }
            case eDirectStaticCond:
            {
                CuthillMckeeReordering(boostGraphObj, perm, iperm);
                break;
            }
            case eDirectMultiLevelStaticCond:
            case eIterativeMultiLevelStaticCond:
            case eXxtMultiLevelStaticCond:
            case ePETScMultiLevelStaticCond:
            {
                MultiLevelBisectionReordering(boostGraphObj, perm, iperm,
                                              bottomUpGraph);
                break;
            }
            default:
            {
                ASSERTL0(false, "Unrecognised solution type");
            }
        }
    }
 
    // Recast the permutation so that it can be used as a map from old
    // trace ID to new trace ID
    cnt = m_numLocalDirBndCoeffs;
    for (i = 0; i < nTraceExp - nDir; ++i)
    {
        traceElmtGid[perm[i] + nDir] = cnt;
        cnt += trace->GetExp(perm[i] + nDir)->GetNcoeffs();
    }
 
    // Now have trace edges Gid position
    cnt = 0;
    for (i = 0; i < nel; ++i)
    {
        exp = expList[i];
 
        for (j = 0; j < exp->GetNtraces(); ++j)
        {
            traceGeom = m_elmtToTrace[i][j]->GetGeom();
            id        = traceGeom->GetGlobalID();
            gid       = traceElmtGid[meshTraceId.find(id)->second];
 
            const int nDim = exp->GetNumBases();
 
            if (nDim == 1)
            {
                order_e                    = 1;
                m_localToGlobalBndMap[cnt] = gid;
            }
            else if (nDim == 2)
            {
                order_e = exp->GetTraceNcoeffs(j);
 
                if (exp->GetTraceOrient(j) == StdRegions::eForwards)
                {
                    for (k = 0; k < order_e; ++k)
                    {
                        m_localToGlobalBndMap[k + cnt] = gid + k;
                    }
                }
                else
                {
                    switch (m_elmtToTrace[i][j]->GetBasisType(0))
                    {
                        case LibUtilities::eModified_A:
                        {
                            // reverse vertex order
                            m_localToGlobalBndMap[cnt]     = gid + 1;
                            m_localToGlobalBndMap[cnt + 1] = gid;
                            for (k = 2; k < order_e; ++k)
                            {
                                m_localToGlobalBndMap[k + cnt] = gid + k;
                            }
 
                            // negate odd modes
                            for (k = 3; k < order_e; k += 2)
                            {
                                m_localToGlobalBndSign[cnt + k] = -1.0;
                            }
                            break;
                        }
                        case LibUtilities::eGLL_Lagrange:
                        {
                            // reverse  order
                            for (k = 0; k < order_e; ++k)
                            {
                                m_localToGlobalBndMap[cnt + order_e - k - 1] =
                                    gid + k;
                            }
                            break;
                        }
                        case LibUtilities::eGauss_Lagrange:
                        {
                            // reverse  order
                            for (k = 0; k < order_e; ++k)
                            {
                                m_localToGlobalBndMap[cnt + order_e - k - 1] =
                                    gid + k;
                            }
                            break;
                        }
                        default:
                        {
                            ASSERTL0(false, "Boundary type not permitted");
                        }
                    }
                }
            }
            else if (nDim == 3)
            {
                order_e = exp->GetTraceNcoeffs(j);
 
                std::map<int, int> orientMap;
 
                Array<OneD, unsigned int> elmMap1(order_e);
                Array<OneD, int> elmSign1(order_e);
                Array<OneD, unsigned int> elmMap2(order_e);
                Array<OneD, int> elmSign2(order_e);
 
                StdRegions::Orientation fo = exp->GetTraceOrient(j);
 
                // Construct mapping which will permute global IDs
                // according to face orientations.
                exp->GetTraceToElementMap(j, elmMap1, elmSign1, fo);
                exp->GetTraceToElementMap(j, elmMap2, elmSign2,
                                          StdRegions::eDir1FwdDir1_Dir2FwdDir2);
 
                for (k = 0; k < elmMap1.size(); ++k)
                {
                    // Find the elemental co-efficient in the original
                    // mapping.
                    int idx = -1;
                    for (int l = 0; l < elmMap2.size(); ++l)
                    {
                        if (elmMap1[k] == elmMap2[l])
                        {
                            idx = l;
                            break;
                        }
                    }
 
                    ASSERTL2(idx != -1, "Problem with face to element map!");
                    orientMap[k] = idx;
                }
 
                for (k = 0; k < order_e; ++k)
                {
                    m_localToGlobalBndMap[k + cnt]  = gid + orientMap[k];
                    m_localToGlobalBndSign[k + cnt] = elmSign2[orientMap[k]];
                }
            }
 
            cnt += order_e;
        }
    }
 
    // set up identify map for lcoal to lcoal
    m_localToLocalBndMap = Array<OneD, int>(m_numLocalBndCoeffs);
 
    // local to bnd map is just a copy
    for (i = 0; i < m_numLocalBndCoeffs; ++i)
    {
        m_localToLocalBndMap[i] = i;
    }
 
    m_numGlobalBndCoeffs = trace->GetNcoeffs();
    m_numGlobalCoeffs    = m_numGlobalBndCoeffs;
 
    CalculateBndSystemBandWidth();
 
    // set up m_bndCondCoeffsToLocalTraceMap
    // Number of boundary expansions
    int nbndexp  = 0;
    int bndTotal = 0;
    int bndOffset;
    int traceOffset;
 
    cnt = 0;
    for (i = 0; i < nbnd; ++i)
    {
        if (bndCond[i]->GetBoundaryConditionType() == SpatialDomains::ePeriodic)
        {
            continue;
        }
        cnt += bndCondExp[i]->GetNcoeffs();
        nbndexp += bndCondExp[i]->GetExpSize();
    }
 
    m_bndCondCoeffsToLocalTraceMap = Array<OneD, int>(cnt);
    m_bndCondIDToGlobalTraceID     = Array<OneD, int>(nbndexp);
 
    cnt = 0;
    for (i = 0; i < bndCondExp.size(); ++i)
    {
        if (bndCond[i]->GetBoundaryConditionType() == SpatialDomains::ePeriodic)
        {
            continue;
        }
 
        for (j = 0; j < bndCondExp[i]->GetExpSize(); ++j)
        {
            bndExp = bndCondExp[i]->GetExp(j);
            id     = bndExp->GetGeom()->GetGlobalID();
 
            int meshId                        = meshTraceId.find(id)->second;
            m_bndCondIDToGlobalTraceID[cnt++] = meshId;
 
            // initialy set up map with global bnd location
            // and then use the localToGlobalBndMap to invert
            // since this is a one to one mapping on boundaries
            traceOffset = traceElmtGid[meshId];
            bndOffset   = bndCondExp[i]->GetCoeff_Offset(j) + bndTotal;
 
            for (k = 0; k < bndExp->GetNcoeffs(); ++k)
            {
                m_bndCondCoeffsToLocalTraceMap[bndOffset + k] = traceOffset + k;
            }
        }
        bndTotal += bndCondExp[i]->GetNcoeffs();
    }
 
    // generate an inverse local to global bnd map;
    map<int, int> invLocToGloMap;
    for (i = 0; i < nbndry; ++i)
    {
        invLocToGloMap[m_localToGlobalBndMap[i]] = i;
    }
 
    // reset bndCondCoeffToLocalTraceMap to hold local rather
    // than global reference
    for (i = 0; i < m_bndCondCoeffsToLocalTraceMap.size(); ++i)
    {
        m_bndCondCoeffsToLocalTraceMap[i] =
            invLocToGloMap[m_bndCondCoeffsToLocalTraceMap[i]];
    }
 
    // Now set up mapping from global coefficients to universal.
    ExpListSharedPtr tr = std::dynamic_pointer_cast<ExpList>(trace);
    SetUpUniversalDGMap(locExp);
 
    m_assemblyComm = AssemblyCommDGSharedPtr(
        MemoryManager<AssemblyCommDG>::AllocateSharedPtr(
            locExp, tr, m_elmtToTrace, bndCondExp, bndCond, periodicTrace));
 
    if ((m_solnType == eDirectMultiLevelStaticCond ||
         m_solnType == eIterativeMultiLevelStaticCond ||
         m_solnType == eXxtMultiLevelStaticCond ||
         m_solnType == ePETScMultiLevelStaticCond) &&
        nGraphVerts)
    {
        if (m_staticCondLevel < (bottomUpGraph->GetNlevels() - 1))
        {
            Array<OneD, int> vwgts_perm(nGraphVerts);
 
            for (int i = 0; i < nGraphVerts; i++)
            {
                vwgts_perm[i] = vwgts[perm[i]];
            }
 
            bottomUpGraph->ExpandGraphWithVertexWeights(vwgts_perm);
            m_nextLevelLocalToGlobalMap =
                MemoryManager<AssemblyMap>::AllocateSharedPtr(this,
                                                              bottomUpGraph);
        }
    }
 
    m_hash =
        hash_range(m_localToGlobalBndMap.begin(), m_localToGlobalBndMap.end());
}
 
/**
 * Constructs a mapping between the process-local global numbering and
 * a universal numbering of the trace space expansion. The universal
 * numbering is defined by the mesh edge IDs to enforce consistency
 * across processes.
 *
 * @param       locExp  List of local elemental expansions.
 */
void AssemblyMapDG::SetUpUniversalDGMap(const ExpList &locExp)
{
    LocalRegions::ExpansionSharedPtr locExpansion;
    int cnt       = 0;
    int id        = 0;
    int order_e   = 0;
    int vGlobalId = 0;
    int maxDof    = 0;
    int dof       = 0;
    int nDim      = 0;
    int i, j, k;
 
    const LocalRegions::ExpansionVector &locExpVector = *(locExp.GetExp());
 
    // Initialise the global to universal maps.
    m_globalToUniversalBndMap =
        Nektar::Array<OneD, int>(m_numGlobalBndCoeffs, -1);
    m_globalToUniversalBndMapUnique =
        Nektar::Array<OneD, int>(m_numGlobalBndCoeffs, -1);
 
    // Loop over all the elements in the domain and compute max
    // DOF. Reduce across all processes to get universal maximum.
    for (i = 0; i < locExpVector.size(); ++i)
    {
        locExpansion = locExpVector[i];
        nDim         = locExpansion->GetShapeDimension();
 
        // Loop over all edges of element i
        if (nDim == 1)
        {
            maxDof = (1 > maxDof ? 1 : maxDof);
        }
        else
        {
            for (j = 0; j < locExpansion->GetNtraces(); ++j)
            {
                dof    = locExpansion->GetTraceNcoeffs(j);
                maxDof = (dof > maxDof ? dof : maxDof);
            }
        }
    }
    m_comm->GetRowComm()->AllReduce(maxDof, LibUtilities::ReduceMax);
 
    // Now have trace edges Gid position
    cnt = 0;
    for (i = 0; i < locExpVector.size(); ++i)
    {
        locExpansion = locExpVector[i];
        nDim         = locExpansion->GetShapeDimension();
 
        // Populate mapping for each edge of the element.
        if (nDim == 1)
        {
            int nverts = locExpansion->GetNverts();
            for (j = 0; j < nverts; ++j)
            {
                LocalRegions::PointExpSharedPtr locPointExp =
                    m_elmtToTrace[i][j]->as<LocalRegions::PointExp>();
                id        = locPointExp->GetGeom()->GetGlobalID();
                vGlobalId = m_localToGlobalBndMap[cnt + j];
                m_globalToUniversalBndMap[vGlobalId] = id * maxDof + j + 1;
            }
            cnt += nverts;
        }
        else if (nDim == 2)
        {
            for (j = 0; j < locExpansion->GetNtraces(); ++j)
            {
                LocalRegions::SegExpSharedPtr locSegExp =
                    m_elmtToTrace[i][j]->as<LocalRegions::SegExp>();
 
                id      = locSegExp->GetGeom()->GetGlobalID();
                order_e = locExpansion->GetTraceNcoeffs(j);
 
                map<int, int> orientMap;
                Array<OneD, unsigned int> map1(order_e), map2(order_e);
                Array<OneD, int> sign1(order_e), sign2(order_e);
 
                locExpansion->GetTraceToElementMap(j, map1, sign1,
                                                   StdRegions::eForwards);
                locExpansion->GetTraceToElementMap(
                    j, map2, sign2, locExpansion->GetTraceOrient(j));
 
                for (k = 0; k < map1.size(); ++k)
                {
                    // Find the elemental co-efficient in the original
                    // mapping.
                    int idx = -1;
                    for (int l = 0; l < map2.size(); ++l)
                    {
                        if (map1[k] == map2[l])
                        {
                            idx = l;
                            break;
                        }
                    }
 
                    ASSERTL2(idx != -1, "Problem with face to"
                                        " element map!");
                    orientMap[k] = idx;
                }
 
                for (k = 0; k < order_e; ++k)
                {
                    vGlobalId = m_localToGlobalBndMap[k + cnt];
                    m_globalToUniversalBndMap[vGlobalId] =
                        id * maxDof + orientMap[k] + 1;
                }
                cnt += order_e;
            }
        }
        else if (nDim == 3) // This could likely be combined with nDim == 2
        {
            for (j = 0; j < locExpansion->GetNtraces(); ++j)
            {
                LocalRegions::Expansion2DSharedPtr locFaceExp =
                    m_elmtToTrace[i][j]->as<LocalRegions::Expansion2D>();
 
                id      = locFaceExp->GetGeom()->GetGlobalID();
                order_e = locExpansion->GetTraceNcoeffs(j);
 
                map<int, int> orientMap;
                Array<OneD, unsigned int> map1(order_e), map2(order_e);
                Array<OneD, int> sign1(order_e), sign2(order_e);
 
                locExpansion->GetTraceToElementMap(
                    j, map1, sign1, StdRegions::eDir1FwdDir1_Dir2FwdDir2);
                locExpansion->GetTraceToElementMap(
                    j, map2, sign2, locExpansion->GetTraceOrient(j));
 
                for (k = 0; k < map1.size(); ++k)
                {
                    // Find the elemental co-efficient in the original
                    // mapping.
                    int idx = -1;
                    for (int l = 0; l < map2.size(); ++l)
                    {
                        if (map1[k] == map2[l])
                        {
                            idx = l;
                            break;
                        }
                    }
 
                    ASSERTL2(idx != -1, "Problem with face to "
                                        "element map!");
                    orientMap[k] = idx;
                }
 
                for (k = 0; k < order_e; ++k)
                {
                    vGlobalId = m_localToGlobalBndMap[k + cnt];
                    m_globalToUniversalBndMap[vGlobalId] =
                        id * maxDof + orientMap[k] + 1;
                }
                cnt += order_e;
            }
        }
    }
 
    // Initialise GSlib and populate the unique map.
    Array<OneD, long> tmp(m_globalToUniversalBndMap.size());
    for (i = 0; i < m_globalToUniversalBndMap.size(); ++i)
    {
        tmp[i] = m_globalToUniversalBndMap[i];
    }
    m_bndGsh = m_gsh = Gs::Init(tmp, m_comm->GetRowComm());
    Gs::Unique(tmp, m_comm->GetRowComm());
    for (i = 0; i < m_globalToUniversalBndMap.size(); ++i)
    {
        m_globalToUniversalBndMapUnique[i] = (tmp[i] >= 0 ? 1 : 0);
    }
}
 
void AssemblyMapDG::RealignTraceElement(Array<OneD, int> &toAlign,
                                        StdRegions::Orientation orient,
                                        int nquad1, int nquad2)
{
    if (orient == StdRegions::eBackwards)
    {
        ASSERTL1(nquad2 == 0, "nquad2 != 0 for reorienation");
        for (int i = 0; i < nquad1 / 2; ++i)
        {
            swap(toAlign[i], toAlign[nquad1 - 1 - i]);
        }
    }
    else if (orient != StdRegions::eForwards)
    {
        ASSERTL1(nquad2 != 0, "nquad2 == 0 for reorienation");
 
        Array<OneD, int> tmp(nquad1 * nquad2);
 
        // Copy transpose.
        if (orient == StdRegions::eDir1FwdDir2_Dir2FwdDir1 ||
            orient == StdRegions::eDir1BwdDir2_Dir2FwdDir1 ||
            orient == StdRegions::eDir1FwdDir2_Dir2BwdDir1 ||
            orient == StdRegions::eDir1BwdDir2_Dir2BwdDir1)
        {
            for (int i = 0; i < nquad2; ++i)
            {
                for (int j = 0; j < nquad1; ++j)
                {
                    tmp[i * nquad1 + j] = toAlign[j * nquad2 + i];
                }
            }
        }
        else
        {
            for (int i = 0; i < nquad2; ++i)
            {
                for (int j = 0; j < nquad1; ++j)
                {
                    tmp[i * nquad1 + j] = toAlign[i * nquad1 + j];
                }
            }
        }
 
        if (orient == StdRegions::eDir1BwdDir1_Dir2FwdDir2 ||
            orient == StdRegions::eDir1BwdDir1_Dir2BwdDir2 ||
            orient == StdRegions::eDir1BwdDir2_Dir2FwdDir1 ||
            orient == StdRegions::eDir1BwdDir2_Dir2BwdDir1)
        {
            // Reverse x direction
            for (int i = 0; i < nquad2; ++i)
            {
                for (int j = 0; j < nquad1 / 2; ++j)
                {
                    swap(tmp[i * nquad1 + j], tmp[i * nquad1 + nquad1 - j - 1]);
                }
            }
        }
 
        if (orient == StdRegions::eDir1FwdDir1_Dir2BwdDir2 ||
            orient == StdRegions::eDir1BwdDir1_Dir2BwdDir2 ||
            orient == StdRegions::eDir1FwdDir2_Dir2BwdDir1 ||
            orient == StdRegions::eDir1BwdDir2_Dir2BwdDir1)
        {
            // Reverse y direction
            for (int j = 0; j < nquad1; ++j)
            {
                for (int i = 0; i < nquad2 / 2; ++i)
                {
                    swap(tmp[i * nquad1 + j],
                         tmp[(nquad2 - i - 1) * nquad1 + j]);
                }
            }
        }
        Vmath::Vcopy(nquad1 * nquad2, tmp, 1, toAlign, 1);
    }
}
 
int AssemblyMapDG::v_GetLocalToGlobalMap(const int i) const
{
    return m_localToGlobalBndMap[i];
}
 
int AssemblyMapDG::v_GetGlobalToUniversalMap(const int i) const
{
    return m_globalToUniversalBndMap[i];
}
 
int AssemblyMapDG::v_GetGlobalToUniversalMapUnique(const int i) const
{
    return m_globalToUniversalBndMapUnique[i];
}
 
const Array<OneD, const int> &AssemblyMapDG::v_GetLocalToGlobalMap()
{
    return m_localToGlobalBndMap;
}
 
const Array<OneD, const int> &AssemblyMapDG::v_GetGlobalToUniversalMap()
{
    return m_globalToUniversalBndMap;
}
 
const Array<OneD, const int> &AssemblyMapDG::v_GetGlobalToUniversalMapUnique()
{
    return m_globalToUniversalBndMapUnique;
}
 
NekDouble AssemblyMapDG::v_GetLocalToGlobalSign(const int i) const
{
    return GetLocalToGlobalBndSign(i);
}
 
void AssemblyMapDG::v_LocalToGlobal(const Array<OneD, const NekDouble> &loc,
                                    Array<OneD, NekDouble> &global,
                                    bool useComm) const
{
    LocalBndToGlobal(loc, global, useComm);
}
 
void AssemblyMapDG::v_GlobalToLocal(const Array<OneD, const NekDouble> &global,
                                    Array<OneD, NekDouble> &loc) const
{
    GlobalToLocalBnd(global, loc);
}
 
void AssemblyMapDG::v_GlobalToLocal(const NekVector<NekDouble> &global,
                                    NekVector<NekDouble> &loc) const
{
    GlobalToLocalBnd(global, loc);
}
 
void AssemblyMapDG::v_Assemble(const Array<OneD, const NekDouble> &loc,
                               Array<OneD, NekDouble> &global) const
{
    AssembleBnd(loc, global);
}
 
void AssemblyMapDG::v_Assemble(const NekVector<NekDouble> &loc,
                               NekVector<NekDouble> &global) const
{
    AssembleBnd(loc, global);
}
 
void AssemblyMapDG::v_UniversalAssemble(Array<OneD, NekDouble> &pGlobal) const
{
    Gs::Gather(pGlobal, Gs::gs_add, m_gsh);
}
 
void AssemblyMapDG::v_UniversalAssemble(NekVector<NekDouble> &pGlobal) const
{
    UniversalAssemble(pGlobal.GetPtr());
}
 
int AssemblyMapDG::v_GetFullSystemBandWidth() const
{
    return GetBndSystemBandWidth();
}
 
int AssemblyMapDG::GetNumDirichletBndPhys()
{
    return m_numDirichletBndPhys;
}
 
Array<OneD, LocalRegions::ExpansionSharedPtr> &AssemblyMapDG::GetElmtToTrace(
    const int i)
{
    ASSERTL1(i >= 0 && i < m_elmtToTrace.size(), "i is out of range");
    return m_elmtToTrace[i];
}
 
Array<OneD, Array<OneD, LocalRegions::ExpansionSharedPtr>>
    &AssemblyMapDG::GetElmtToTrace()
{
    return m_elmtToTrace;
}
 
AssemblyCommDGSharedPtr AssemblyMapDG::GetAssemblyCommDG()
{
    return m_assemblyComm;
}
 
} // namespace MultiRegions
} // namespace Nektar