Base class for unsteady solvers. More...

#include <UnsteadySystem.h>

Inheritance diagram for Nektar::SolverUtils::UnsteadySystem:

Collaboration diagram for Nektar::SolverUtils::UnsteadySystem:

Public Member Functions
virtual SOLVER_UTILS_EXPORT	~UnsteadySystem ()
	Destructor. More...

SOLVER_UTILS_EXPORT NekDouble	GetTimeStep (const Array< OneD, const Array< OneD, NekDouble > > &inarray)
	Calculate the larger time-step mantaining the problem stable. More...

Public Member Functions inherited from Nektar::SolverUtils::EquationSystem
virtual SOLVER_UTILS_EXPORT	~EquationSystem ()
	Destructor. More...

SOLVER_UTILS_EXPORT void	SetUpTraceNormals (void)

SOLVER_UTILS_EXPORT void	InitObject ()
	Initialises the members of this object. More...

SOLVER_UTILS_EXPORT void	DoInitialise ()
	Perform any initialisation necessary before solving the problem. More...

SOLVER_UTILS_EXPORT void	DoSolve ()
	Solve the problem. More...

SOLVER_UTILS_EXPORT void	TransCoeffToPhys ()
	Transform from coefficient to physical space. More...

SOLVER_UTILS_EXPORT void	TransPhysToCoeff ()
	Transform from physical to coefficient space. More...

SOLVER_UTILS_EXPORT void	Output ()
	Perform output operations after solve. More...

SOLVER_UTILS_EXPORT NekDouble	LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
	Linf error computation. More...

SOLVER_UTILS_EXPORT std::string	GetSessionName ()
	Get Session name. More...

template<class T >
boost::shared_ptr< T >	as ()

SOLVER_UTILS_EXPORT void	ResetSessionName (std::string newname)
	Reset Session name. More...

SOLVER_UTILS_EXPORT LibUtilities::SessionReaderSharedPtr	GetSession ()
	Get Session name. More...

SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr	GetPressure ()
	Get pressure field if available. More...

SOLVER_UTILS_EXPORT void	PrintSummary (std::ostream &out)
	Print a summary of parameters and solver characteristics. More...

SOLVER_UTILS_EXPORT void	SetLambda (NekDouble lambda)
	Set parameter m_lambda. More...

SOLVER_UTILS_EXPORT void	EvaluateFunction (Array< OneD, Array< OneD, NekDouble > > &pArray, std::string pFunctionName, const NekDouble pTime=0.0, const int domain=0)
	Evaluates a function as specified in the session file. More...

SOLVER_UTILS_EXPORT void	EvaluateFunction (std::vector< std::string > pFieldNames, Array< OneD, Array< OneD, NekDouble > > &pFields, const std::string &pName, const NekDouble &pTime=0.0, const int domain=0)
	Populate given fields with the function from session. More...

SOLVER_UTILS_EXPORT void	EvaluateFunction (std::vector< std::string > pFieldNames, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const std::string &pName, const NekDouble &pTime=0.0, const int domain=0)
	Populate given fields with the function from session. More...

SOLVER_UTILS_EXPORT void	EvaluateFunction (std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)

SOLVER_UTILS_EXPORT std::string	DescribeFunction (std::string pFieldName, const std::string &pFunctionName, const int domain)
	Provide a description of a function for a given field name. More...

SOLVER_UTILS_EXPORT void	InitialiseBaseFlow (Array< OneD, Array< OneD, NekDouble > > &base)
	Perform initialisation of the base flow. More...

SOLVER_UTILS_EXPORT void	SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)
	Initialise the data in the dependent fields. More...

SOLVER_UTILS_EXPORT void	EvaluateExactSolution (int field, Array< OneD, NekDouble > &outfield, const NekDouble time)
	Evaluates an exact solution. More...

SOLVER_UTILS_EXPORT NekDouble	L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln, bool Normalised=false)
	Compute the L2 error between fields and a given exact solution. More...

SOLVER_UTILS_EXPORT NekDouble	L2Error (unsigned int field, bool Normalised=false)
	Compute the L2 error of the fields. More...

SOLVER_UTILS_EXPORT Array < OneD, NekDouble >	ErrorExtraPoints (unsigned int field)
	Compute error (L2 and L_inf) over an larger set of quadrature points return [L2 Linf]. More...

SOLVER_UTILS_EXPORT void	WeakAdvectionGreensDivergenceForm (const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)
	Compute the inner product $(\nabla \phi \cdot F)$ . More...

SOLVER_UTILS_EXPORT void	WeakAdvectionDivergenceForm (const Array< OneD, Array< OneD, NekDouble > > &F, Array< OneD, NekDouble > &outarray)
	Compute the inner product $(\phi, \nabla \cdot F)$ . More...

SOLVER_UTILS_EXPORT void	WeakAdvectionNonConservativeForm (const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, bool UseContCoeffs=false)
	Compute the inner product $(\phi, V\cdot \nabla u)$ . More...

f SOLVER_UTILS_EXPORT void	AdvectionNonConservativeForm (const Array< OneD, Array< OneD, NekDouble > > &V, const Array< OneD, const NekDouble > &u, Array< OneD, NekDouble > &outarray, Array< OneD, NekDouble > &wk=NullNekDouble1DArray)
	Compute the non-conservative advection. More...

SOLVER_UTILS_EXPORT void	WeakDGAdvection (const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false, int nvariables=0)
	Calculate the weak discontinuous Galerkin advection. More...

SOLVER_UTILS_EXPORT void	WeakDGDiffusion (const Array< OneD, Array< OneD, NekDouble > > &InField, Array< OneD, Array< OneD, NekDouble > > &OutField, bool NumericalFluxIncludesNormal=true, bool InFieldIsInPhysSpace=false)
	Calculate weak DG Diffusion in the LDG form. More...

SOLVER_UTILS_EXPORT void	Checkpoint_Output (const int n)
	Write checkpoint file of m_fields. More...

SOLVER_UTILS_EXPORT void	Checkpoint_Output (const int n, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
	Write checkpoint file of custom data fields. More...

SOLVER_UTILS_EXPORT void	Checkpoint_BaseFlow (const int n)
	Write base flow file of m_fields. More...

SOLVER_UTILS_EXPORT void	WriteFld (const std::string &outname)
	Write field data to the given filename. More...

SOLVER_UTILS_EXPORT void	WriteFld (const std::string &outname, MultiRegions::ExpListSharedPtr &field, std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)
	Write input fields to the given filename. More...

SOLVER_UTILS_EXPORT void	ImportFld (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields)
	Input field data from the given file. More...

SOLVER_UTILS_EXPORT void	ImportFldToMultiDomains (const std::string &infile, Array< OneD, MultiRegions::ExpListSharedPtr > &pFields, const int ndomains)
	Input field data from the given file to multiple domains. More...

SOLVER_UTILS_EXPORT void	ImportFld (const std::string &infile, std::vector< std::string > &fieldStr, Array< OneD, Array< OneD, NekDouble > > &coeffs)
	Output a field. Input field data into array from the given file. More...

SOLVER_UTILS_EXPORT void	ImportFld (const std::string &infile, MultiRegions::ExpListSharedPtr &pField, std::string &pFieldName)
	Output a field. Input field data into ExpList from the given file. More...

SOLVER_UTILS_EXPORT void	ScanForHistoryPoints ()
	Builds map of which element holds each history point. More...

SOLVER_UTILS_EXPORT void	WriteHistoryData (std::ostream &out)
	Probe each history point and write to file. More...

SOLVER_UTILS_EXPORT void	SessionSummary (SummaryList &vSummary)
	Write out a session summary. More...

SOLVER_UTILS_EXPORT Array < OneD, MultiRegions::ExpListSharedPtr > &	UpdateFields ()

SOLVER_UTILS_EXPORT LibUtilities::FieldMetaDataMap &	UpdateFieldMetaDataMap ()
	Get hold of FieldInfoMap so it can be updated. More...

SOLVER_UTILS_EXPORT NekDouble	GetFinalTime ()
	Return final time. More...

SOLVER_UTILS_EXPORT int	GetNcoeffs ()

SOLVER_UTILS_EXPORT int	GetNcoeffs (const int eid)

SOLVER_UTILS_EXPORT int	GetNumExpModes ()

SOLVER_UTILS_EXPORT const Array< OneD, int >	GetNumExpModesPerExp ()

SOLVER_UTILS_EXPORT int	GetNvariables ()

SOLVER_UTILS_EXPORT const std::string	GetVariable (unsigned int i)

SOLVER_UTILS_EXPORT int	GetTraceTotPoints ()

SOLVER_UTILS_EXPORT int	GetTraceNpoints ()

SOLVER_UTILS_EXPORT int	GetExpSize ()

SOLVER_UTILS_EXPORT int	GetPhys_Offset (int n)

SOLVER_UTILS_EXPORT int	GetCoeff_Offset (int n)

SOLVER_UTILS_EXPORT int	GetTotPoints ()

SOLVER_UTILS_EXPORT int	GetTotPoints (int n)

SOLVER_UTILS_EXPORT int	GetNpoints ()

SOLVER_UTILS_EXPORT int	GetNumElmVelocity ()

SOLVER_UTILS_EXPORT int	GetSteps ()

SOLVER_UTILS_EXPORT NekDouble	GetTimeStep ()

SOLVER_UTILS_EXPORT void	CopyFromPhysField (const int i, Array< OneD, NekDouble > &output)

SOLVER_UTILS_EXPORT void	CopyToPhysField (const int i, Array< OneD, NekDouble > &output)

SOLVER_UTILS_EXPORT void	SetSteps (const int steps)

SOLVER_UTILS_EXPORT void	ZeroPhysFields ()

SOLVER_UTILS_EXPORT void	FwdTransFields ()

SOLVER_UTILS_EXPORT void	GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)

SOLVER_UTILS_EXPORT void	GetFluxVector (const int i, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &fluxX, Array< OneD, Array< OneD, NekDouble > > &fluxY)

SOLVER_UTILS_EXPORT void	GetFluxVector (const int i, const int j, Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &flux)

SOLVER_UTILS_EXPORT void	NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)

SOLVER_UTILS_EXPORT void	NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)

SOLVER_UTILS_EXPORT void	NumFluxforScalar (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)

SOLVER_UTILS_EXPORT void	NumFluxforVector (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)

SOLVER_UTILS_EXPORT void	SetModifiedBasis (const bool modbasis)

SOLVER_UTILS_EXPORT int	NoCaseStringCompare (const std::string &s1, const std::string &s2)
	Perform a case-insensitive string comparison. More...

SOLVER_UTILS_EXPORT int	GetCheckpointNumber ()

SOLVER_UTILS_EXPORT void	SetCheckpointNumber (int num)

SOLVER_UTILS_EXPORT int	GetCheckpointSteps ()

SOLVER_UTILS_EXPORT void	SetCheckpointSteps (int num)

SOLVER_UTILS_EXPORT void	SetTime (const NekDouble time)

SOLVER_UTILS_EXPORT void	SetInitialStep (const int step)

SOLVER_UTILS_EXPORT void	SetBoundaryConditions (NekDouble time)
	Evaluates the boundary conditions at the given time. More...

virtual SOLVER_UTILS_EXPORT bool	v_NegatedOp ()
	Virtual function to identify if operator is negated in DoSolve. More...

Public Attributes
NekDouble	m_cflSafetyFactor
	CFL safety factor (comprise between 0 to 1). More...

Protected Member Functions
SOLVER_UTILS_EXPORT	UnsteadySystem (const LibUtilities::SessionReaderSharedPtr &pSession)
	Initialises UnsteadySystem class members. More...

virtual SOLVER_UTILS_EXPORT void	v_InitObject ()
	Init object for UnsteadySystem class. More...

SOLVER_UTILS_EXPORT NekDouble	MaxTimeStepEstimator ()
	Get the maximum timestep estimator for cfl control. More...

virtual SOLVER_UTILS_EXPORT void	v_DoSolve ()
	Solves an unsteady problem. More...

virtual SOLVER_UTILS_EXPORT void	v_DoInitialise ()
	Sets up initial conditions. More...

virtual SOLVER_UTILS_EXPORT void	v_GenerateSummary (SummaryList &s)
	Print a summary of time stepping parameters. More...

virtual SOLVER_UTILS_EXPORT void	v_AppendOutput1D (Array< OneD, Array< OneD, NekDouble > > &solution1D)
	Print the solution at each solution point in a txt file. More...

virtual SOLVER_UTILS_EXPORT void	v_NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numflux)

virtual SOLVER_UTILS_EXPORT void	v_NumericalFlux (Array< OneD, Array< OneD, NekDouble > > &physfield, Array< OneD, Array< OneD, NekDouble > > &numfluxX, Array< OneD, Array< OneD, NekDouble > > &numfluxY)

virtual SOLVER_UTILS_EXPORT void	v_NumFluxforScalar (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &uflux)

virtual SOLVER_UTILS_EXPORT void	v_NumFluxforVector (const Array< OneD, Array< OneD, NekDouble > > &ufield, Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &qfield, Array< OneD, Array< OneD, NekDouble > > &qflux)

virtual SOLVER_UTILS_EXPORT NekDouble	v_GetTimeStep (const Array< OneD, const Array< OneD, NekDouble > > &inarray)
	Return the timestep to be used for the next step in the time-marching loop. More...

virtual SOLVER_UTILS_EXPORT bool	v_PreIntegrate (int step)

virtual SOLVER_UTILS_EXPORT bool	v_PostIntegrate (int step)

virtual SOLVER_UTILS_EXPORT bool	v_SteadyStateCheck (int step)

virtual SOLVER_UTILS_EXPORT bool	v_RequireFwdTrans ()

SOLVER_UTILS_EXPORT void	CheckForRestartTime (NekDouble &time, int &nchk)

SOLVER_UTILS_EXPORT void	SVVVarDiffCoeff (const Array< OneD, Array< OneD, NekDouble > > vel, StdRegions::VarCoeffMap &varCoeffMap)
	Evaluate the SVV diffusion coefficient according to Moura's paper where it should proportional to h time velocity. More...

Protected Member Functions inherited from Nektar::SolverUtils::EquationSystem
SOLVER_UTILS_EXPORT	EquationSystem (const LibUtilities::SessionReaderSharedPtr &pSession)
	Initialises EquationSystem class members. More...

int	nocase_cmp (const std::string &s1, const std::string &s2)

virtual SOLVER_UTILS_EXPORT NekDouble	v_LinfError (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray)
	Virtual function for the L_inf error computation between fields and a given exact solution. More...

virtual SOLVER_UTILS_EXPORT NekDouble	v_L2Error (unsigned int field, const Array< OneD, NekDouble > &exactsoln=NullNekDouble1DArray, bool Normalised=false)
	Virtual function for the L_2 error computation between fields and a given exact solution. More...

virtual SOLVER_UTILS_EXPORT void	v_TransCoeffToPhys ()
	Virtual function for transformation to physical space. More...

virtual SOLVER_UTILS_EXPORT void	v_TransPhysToCoeff ()
	Virtual function for transformation to coefficient space. More...

virtual SOLVER_UTILS_EXPORT void	v_SetInitialConditions (NekDouble initialtime=0.0, bool dumpInitialConditions=true, const int domain=0)

virtual SOLVER_UTILS_EXPORT void	v_EvaluateExactSolution (unsigned int field, Array< OneD, NekDouble > &outfield, const NekDouble time)

SOLVER_UTILS_EXPORT void	EvaluateFunctionExp (std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)

SOLVER_UTILS_EXPORT void	EvaluateFunctionFld (std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)

SOLVER_UTILS_EXPORT void	EvaluateFunctionPts (std::string pFieldName, Array< OneD, NekDouble > &pArray, const std::string &pFunctionName, const NekDouble &pTime=0.0, const int domain=0)

SOLVER_UTILS_EXPORT void	LoadPts (std::string funcFilename, std::string filename, Nektar::LibUtilities::PtsFieldSharedPtr &outPts)

SOLVER_UTILS_EXPORT void	SetUpBaseFields (SpatialDomains::MeshGraphSharedPtr &mesh)

SOLVER_UTILS_EXPORT void	ImportFldBase (std::string pInfile, SpatialDomains::MeshGraphSharedPtr pGraph)

virtual SOLVER_UTILS_EXPORT void	v_Output (void)

virtual SOLVER_UTILS_EXPORT MultiRegions::ExpListSharedPtr	v_GetPressure (void)

virtual SOLVER_UTILS_EXPORT void	v_ExtraFldOutput (std::vector< Array< OneD, NekDouble > > &fieldcoeffs, std::vector< std::string > &variables)

Protected Attributes
int	m_infosteps
	Number of time steps between outputting status information. More...

int	m_nanSteps

LibUtilities::TimeIntegrationWrapperSharedPtr	m_intScheme
	Wrapper to the time integration scheme. More...

LibUtilities::TimeIntegrationSchemeOperators	m_ode
	The time integration scheme operators to use. More...

LibUtilities::TimeIntegrationSolutionSharedPtr	m_intSoln

NekDouble	m_epsilon

bool	m_explicitDiffusion
	Indicates if explicit or implicit treatment of diffusion is used. More...

bool	m_explicitAdvection
	Indicates if explicit or implicit treatment of advection is used. More...

bool	m_explicitReaction
	Indicates if explicit or implicit treatment of reaction is used. More...

bool	m_homoInitialFwd
	Flag to determine if simulation should start in homogeneous forward transformed state. More...

std::vector< int >	m_intVariables

std::vector< FilterSharedPtr >	m_filters

Protected Attributes inherited from Nektar::SolverUtils::EquationSystem
LibUtilities::CommSharedPtr	m_comm
	Communicator. More...

LibUtilities::SessionReaderSharedPtr	m_session
	The session reader. More...

LibUtilities::FieldIOSharedPtr	m_fld
	Field input/output. More...

std::map< std::string, FieldUtils::Interpolator >	m_interpolators
	Map of interpolator objects. More...

std::map< std::string, std::pair< std::string, LibUtilities::PtsFieldSharedPtr > >	m_loadedPtsFields
	pts fields we already read from disk: {funcFilename: (filename, ptsfield)} More...

std::map< std::string, std::pair< std::string, loadedFldField > >	m_loadedFldFields

Array< OneD, MultiRegions::ExpListSharedPtr >	m_fields
	Array holding all dependent variables. More...

Array< OneD, MultiRegions::ExpListSharedPtr >	m_base
	Base fields. More...

Array< OneD, MultiRegions::ExpListSharedPtr >	m_derivedfields
	Array holding all dependent variables. More...

SpatialDomains::BoundaryConditionsSharedPtr	m_boundaryConditions
	Pointer to boundary conditions object. More...

SpatialDomains::MeshGraphSharedPtr	m_graph
	Pointer to graph defining mesh. More...

std::string	m_sessionName
	Name of the session. More...

NekDouble	m_time
	Current time of simulation. More...

int	m_initialStep
	Number of the step where the simulation should begin. More...

NekDouble	m_fintime
	Finish time of the simulation. More...

NekDouble	m_timestep
	Time step size. More...

NekDouble	m_lambda
	Lambda constant in real system if one required. More...

NekDouble	m_checktime
	Time between checkpoints. More...

int	m_nchk
	Number of checkpoints written so far. More...

int	m_steps
	Number of steps to take. More...

int	m_checksteps
	Number of steps between checkpoints. More...

int	m_spacedim
	Spatial dimension (>= expansion dim). More...

int	m_expdim
	Expansion dimension. More...

bool	m_singleMode
	Flag to determine if single homogeneous mode is used. More...

bool	m_halfMode
	Flag to determine if half homogeneous mode is used. More...

bool	m_multipleModes
	Flag to determine if use multiple homogenenous modes are used. More...

bool	m_useFFT
	Flag to determine if FFT is used for homogeneous transform. More...

bool	m_homogen_dealiasing
	Flag to determine if dealiasing is used for homogeneous simulations. More...

bool	m_specHP_dealiasing
	Flag to determine if dealisising is usde for the Spectral/hp element discretisation. More...

enum MultiRegions::ProjectionType	m_projectionType
	Type of projection; e.g continuous or discontinuous. More...

Array< OneD, Array< OneD, NekDouble > >	m_traceNormals
	Array holding trace normals for DG simulations in the forwards direction. More...

Array< OneD, Array< OneD, Array< OneD, NekDouble > > >	m_gradtan
	1 x nvariable x nq More...

Array< OneD, Array< OneD, Array< OneD, NekDouble > > >	m_tanbasis
	2 x m_spacedim x nq More...

Array< OneD, bool >	m_checkIfSystemSingular
	Flag to indicate if the fields should be checked for singularity. More...

LibUtilities::FieldMetaDataMap	m_fieldMetaDataMap
	Map to identify relevant solver info to dump in output fields. More...

int	m_NumQuadPointsError
	Number of Quadrature points used to work out the error. More...

enum HomogeneousType	m_HomogeneousType

NekDouble	m_LhomX
	physical length in X direction (if homogeneous) More...

NekDouble	m_LhomY
	physical length in Y direction (if homogeneous) More...

NekDouble	m_LhomZ
	physical length in Z direction (if homogeneous) More...

int	m_npointsX
	number of points in X direction (if homogeneous) More...

int	m_npointsY
	number of points in Y direction (if homogeneous) More...

int	m_npointsZ
	number of points in Z direction (if homogeneous) More...

int	m_HomoDirec
	number of homogenous directions More...

Private Member Functions
void	WeakPenaltyforScalar (const int var, const Array< OneD, const NekDouble > &physfield, Array< OneD, NekDouble > &penaltyflux, NekDouble time=0.0)

void	WeakPenaltyforVector (const int var, const int dir, const Array< OneD, const NekDouble > &physfield, Array< OneD, NekDouble > &penaltyflux, NekDouble C11, NekDouble time=0.0)

Additional Inherited Members
Protected Types inherited from Nektar::SolverUtils::EquationSystem
enum	HomogeneousType { eHomogeneous1D, eHomogeneous2D, eHomogeneous3D, eNotHomogeneous }
	Parameter for homogeneous expansions. More...

Detailed Description

Base class for unsteady solvers.

Provides the underlying timestepping framework for unsteady solvers including the general timestepping routines. This class is not intended to be directly instantiated, but rather is a base class on which to define unsteady solvers.

For details on implementing unsteady solvers see sectionADRSolverModuleImplementation here

Definition at line 48 of file UnsteadySystem.h.

Constructor & Destructor Documentation

Nektar::SolverUtils::UnsteadySystem::~UnsteadySystem ( )

virtual

Destructor.

Destructor for the class UnsteadyAdvection.

Definition at line 128 of file UnsteadySystem.cpp.

129 {

130 }

Nektar::SolverUtils::UnsteadySystem::UnsteadySystem ( const LibUtilities::SessionReaderSharedPtr & pSession )

protected

Initialises UnsteadySystem class members.

Processes SolverInfo parameters from the session file and sets up timestepping-specific code.

Parameters

pSession Session object to read parameters from.

Definition at line 67 of file UnsteadySystem.cpp.

             : EquationSystem(pSession),
               m_infosteps(10)
 
         {
         }

Member Function Documentation

void Nektar::SolverUtils::UnsteadySystem::CheckForRestartTime	(	NekDouble &	time,
		int &	nchk
	)

protected

Definition at line 702 of file UnsteadySystem.cpp.

References Nektar::LibUtilities::FieldIO::CreateForFile(), Nektar::LibUtilities::eFunctionTypeFile, Nektar::iterator, Nektar::SolverUtils::EquationSystem::m_fieldMetaDataMap, Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_session, Nektar::LibUtilities::NullFieldMetaDataMap, and Nektar::LibUtilities::PortablePath().

Referenced by v_DoInitialise().

         {
             if (m_session->DefinesFunction("InitialConditions"))
             {
                 for (int i = 0; i < m_fields.num_elements(); ++i)
                 {
                     LibUtilities::FunctionType vType;
 
                     vType = m_session->GetFunctionType(
                         "InitialConditions", m_session->GetVariable(i));
 
                     if (vType == LibUtilities::eFunctionTypeFile)
                     {
                         std::string filename
                             = m_session->GetFunctionFilename(
                                 "InitialConditions", m_session->GetVariable(i));
 
                         fs::path pfilename(filename);
 
                         // redefine path for parallel file which is in directory
                         if(fs::is_directory(pfilename))
                         {
                             fs::path metafile("Info.xml");
                             fs::path fullpath = pfilename / metafile;
                             filename = LibUtilities::PortablePath(fullpath);
                         }
                         LibUtilities::FieldIOSharedPtr fld =
                             LibUtilities::FieldIO::CreateForFile(
                                 m_session, filename);
                         fld->ImportFieldMetaData(filename, m_fieldMetaDataMap);
 
                         // check to see if time defined
                         if (m_fieldMetaDataMap !=
                                 LibUtilities::NullFieldMetaDataMap)
                         {
                             LibUtilities::FieldMetaDataMap::iterator iter; 
                             
                             iter = m_fieldMetaDataMap.find("Time");
                             if (iter != m_fieldMetaDataMap.end())
                             {
                                 time = boost::lexical_cast<NekDouble>(
                                     iter->second);
                             }
 
                             iter = m_fieldMetaDataMap.find("ChkFileNum");
                             if (iter != m_fieldMetaDataMap.end())
                             {
                                 nchk = boost::lexical_cast<NekDouble>(
                                     iter->second);
                             }
                         }
                         
                         break;
                     }
                 }
             }
         }

NekDouble Nektar::SolverUtils::UnsteadySystem::GetTimeStep ( const Array< OneD, const Array< OneD, NekDouble > > & inarray )

Calculate the larger time-step mantaining the problem stable.

Return the timestep to be used for the next step in the time-marching loop.

This function can be overloaded to facilitate solver which utilise a CFL (or other) parameter to determine a maximum timestep under which the problem remains stable.

Definition at line 919 of file UnsteadySystem.cpp.

References v_GetTimeStep().

         {
             return v_GetTimeStep(inarray);
         }

NekDouble Nektar::SolverUtils::UnsteadySystem::MaxTimeStepEstimator ( )

protected

Get the maximum timestep estimator for cfl control.

Returns the maximum time estimator for CFL control.

Definition at line 135 of file UnsteadySystem.cpp.

References ASSERTL0, Nektar::LibUtilities::eAdamsBashforthOrder1, Nektar::LibUtilities::eAdamsBashforthOrder2, Nektar::LibUtilities::eClassicalRungeKutta4, Nektar::LibUtilities::eForwardEuler, Nektar::LibUtilities::eMidpoint, Nektar::LibUtilities::eRungeKutta2, Nektar::LibUtilities::eRungeKutta2_ImprovedEuler, Nektar::LibUtilities::eRungeKutta2_SSP, Nektar::LibUtilities::eRungeKutta3_SSP, Nektar::LibUtilities::eRungeKutta4, and m_intScheme.

Referenced by Nektar::APE::GetCFLEstimate(), and Nektar::CompressibleFlowSystem::v_GetTimeStep().

         {
             NekDouble TimeStability = 0.0;
             switch(m_intScheme->GetIntegrationMethod())
             {
                 case LibUtilities::eForwardEuler:
                 case LibUtilities::eClassicalRungeKutta4:
                 case LibUtilities::eRungeKutta4:
                 {
                     TimeStability = 2.784;
                     break;
                 }
                 case LibUtilities::eAdamsBashforthOrder1:
                 case LibUtilities::eMidpoint:
                 case LibUtilities::eRungeKutta2:
                 case LibUtilities::eRungeKutta2_ImprovedEuler:
                 case LibUtilities::eRungeKutta2_SSP:
                 case LibUtilities::eRungeKutta3_SSP:
                 {
                     TimeStability = 2.0;
                     break;
                 }
                 case LibUtilities::eAdamsBashforthOrder2:
                 {
                     TimeStability = 1.0;
                     break;
                 }
                 default:
                 {
                     ASSERTL0(
                         false,
                         "No CFL control implementation for this time"
                         "integration scheme");
                 }
             }
             return TimeStability;
         }

void Nektar::SolverUtils::UnsteadySystem::SVVVarDiffCoeff	(	const Array< OneD, Array< OneD, NekDouble > >	vel,
		StdRegions::VarCoeffMap &	varCoeffMap
	)

protected

Evaluate the SVV diffusion coefficient according to Moura's paper where it should proportional to h time velocity.

Definition at line 953 of file UnsteadySystem.cpp.

References Nektar::StdRegions::eVarCoeffLaplacian, Nektar::SolverUtils::EquationSystem::m_fields, Vmath::Smul(), Vmath::Vmul(), Vmath::Vsqrt(), and Vmath::Vvtvp().

Referenced by Nektar::UnsteadyViscousBurgers::DoImplicitSolve(), and Nektar::UnsteadyViscousBurgers::v_InitObject().

         {
             int phystot = m_fields[0]->GetTotPoints();
             int nvel = vel.num_elements();
 
             Array<OneD, NekDouble> varcoeff(phystot),tmp;
 
             // calculate magnitude of v
             Vmath::Vmul(phystot,vel[0],1,vel[0],1,varcoeff,1);
             for(int n = 1; n < nvel; ++n)
             {
                 Vmath::Vvtvp(phystot,vel[n],1,vel[n],1,varcoeff,1,varcoeff,1);
             }
             Vmath::Vsqrt(phystot,varcoeff,1,varcoeff,1);
 
             for(int i = 0; i < m_fields[0]->GetNumElmts(); ++i)
             {
                 int offset = m_fields[0]->GetPhys_Offset(i);
                 int nq = m_fields[0]->GetExp(i)->GetTotPoints();
                 Array<OneD, NekDouble> unit(nq,1.0);
 
                 int nmodes = 0;
 
                 for(int n = 0; n < m_fields[0]->GetExp(i)->GetNumBases(); ++n)
                 {
                     nmodes = max(nmodes,
                                  m_fields[0]->GetExp(i)->GetBasisNumModes(n));
                 }
 
                 NekDouble h = m_fields[0]->GetExp(i)->Integral(unit);
                 h = pow(h,(NekDouble) (1.0/nvel))/((NekDouble) nmodes);
 
                 Vmath::Smul(nq,h,varcoeff+offset,1,tmp = varcoeff+offset,1);
             }
 
             // set up map with eVarCoffLaplacian key
             varCoeffMap[StdRegions::eVarCoeffLaplacian] = varcoeff;
         }

void Nektar::SolverUtils::UnsteadySystem::v_AppendOutput1D ( Array< OneD, Array< OneD, NekDouble > > & solution1D )

protectedvirtual

Print the solution at each solution point in a txt file.

Stores the solution in a file for 1D problems only. This method has been implemented to facilitate the post-processing for 1D problems.

Definition at line 506 of file UnsteadySystem.cpp.

References Nektar::SolverUtils::EquationSystem::GetNpoints(), and Nektar::SolverUtils::EquationSystem::m_fields.

Referenced by v_DoSolve().

         {
             // Coordinates of the quadrature points in the real physical space
             Array<OneD,NekDouble> x(GetNpoints());
             Array<OneD,NekDouble> y(GetNpoints());
             Array<OneD,NekDouble> z(GetNpoints());
             m_fields[0]->GetCoords(x, y, z);
             
             // Print out the solution in a txt file
             ofstream outfile;
             outfile.open("solution1D.txt");
             for(int i = 0; i < GetNpoints(); i++)
             {
                 outfile << scientific << setw (17) << setprecision(16) << x[i]
                         << "  " << solution1D[0][i] << endl;
             }
             outfile << endl << endl;
             outfile.close();
         }

void Nektar::SolverUtils::UnsteadySystem::v_DoInitialise ( void )

protectedvirtual

Sets up initial conditions.

Sets the initial conditions.

Reimplemented from Nektar::SolverUtils::EquationSystem.

Reimplemented in Nektar::CoupledLinearNS, Nektar::PulseWaveSystem, Nektar::VelocityCorrectionScheme, and Nektar::VCSMapping.

Definition at line 461 of file UnsteadySystem.cpp.

References CheckForRestartTime(), Nektar::SolverUtils::EquationSystem::m_nchk, Nektar::SolverUtils::EquationSystem::m_time, Nektar::SolverUtils::EquationSystem::SetBoundaryConditions(), and Nektar::SolverUtils::EquationSystem::SetInitialConditions().

Referenced by Nektar::VCSMapping::v_DoInitialise(), and Nektar::VelocityCorrectionScheme::v_DoInitialise().

         {
             CheckForRestartTime(m_time, m_nchk);
             SetBoundaryConditions(m_time);
             SetInitialConditions(m_time);
         }

void Nektar::SolverUtils::UnsteadySystem::v_DoSolve ( void )

protectedvirtual

Solves an unsteady problem.

Initialises the time integration scheme (as specified in the session file), and perform the time integration.

Reimplemented from Nektar::SolverUtils::EquationSystem.

Reimplemented in Nektar::CoupledLinearNS, and Nektar::PulseWaveSystem.

Definition at line 177 of file UnsteadySystem.cpp.

Referenced by Nektar::CoupledLinearNS::v_DoSolve().

         {
             ASSERTL0(m_intScheme != 0, "No time integration scheme.");
 
             int i = 1;
             int nvariables = 0;
             int nfields = m_fields.num_elements();
 
             if (m_intVariables.empty())
             {
                 for (i = 0; i < nfields; ++i)
                 {
                     m_intVariables.push_back(i);
                 }
                 nvariables = nfields;
             }
             else
             {
                 nvariables = m_intVariables.size();
             }
 
             // Integrate in wave-space if using homogeneous1D
             if(m_HomogeneousType != eNotHomogeneous && m_homoInitialFwd)
             {
                 for(i = 0; i < nfields; ++i)
                 {
                     m_fields[i]->HomogeneousFwdTrans(m_fields[i]->GetPhys(),
                                                      m_fields[i]->UpdatePhys());
                     m_fields[i]->SetWaveSpace(true);
                     m_fields[i]->SetPhysState(false);
                 }
             }
 
             // Set up wrapper to fields data storage.
             Array<OneD, Array<OneD, NekDouble> > fields(nvariables);
             Array<OneD, Array<OneD, NekDouble> > tmp   (nvariables);
             
             // Order storage to list time-integrated fields first.
             for(i = 0; i < nvariables; ++i)
             {
                 fields[i] = m_fields[m_intVariables[i]]->GetPhys();
                 m_fields[m_intVariables[i]]->SetPhysState(false);
             }
             
             // Initialise time integration scheme
             m_intSoln = m_intScheme->InitializeScheme(
                 m_timestep, fields, m_time, m_ode);
 
             // Initialise filters
             std::vector<FilterSharedPtr>::iterator x;
             for (x = m_filters.begin(); x != m_filters.end(); ++x)
             {
                 (*x)->Initialise(m_fields, m_time);
             }
 
             // Ensure that there is no conflict of parameters
             if(m_cflSafetyFactor > 0.0)
             {
                 // Check final condition
                 ASSERTL0(m_fintime == 0.0 || m_steps == 0,
                          "Final condition not unique: "
                          "fintime > 0.0 and Nsteps > 0");
                 
                 // Check timestep condition
                 ASSERTL0(m_timestep == 0.0, 
                          "Timestep not unique: timestep > 0.0 & CFL > 0.0");
             }
 
             // Check uniqueness of checkpoint output
             ASSERTL0((m_checktime == 0.0 && m_checksteps == 0) ||
                      (m_checktime >  0.0 && m_checksteps == 0) || 
                      (m_checktime == 0.0 && m_checksteps >  0),
                      "Only one of IO_CheckTime and IO_CheckSteps "
                      "should be set!");
 
             Timer     timer;
             bool      doCheckTime   = false;
             int       step          = m_initialStep;
             int       stepCounter   = 0;
             NekDouble intTime       = 0.0;
             NekDouble lastCheckTime = 0.0;
             NekDouble cpuTime       = 0.0;
             NekDouble elapsed       = 0.0;
 
             while (step   < m_steps ||
                    m_time < m_fintime - NekConstants::kNekZeroTol)
             {
                 if (m_cflSafetyFactor)
                 {
                     m_timestep = GetTimeStep(fields);
                     
                     // Ensure that the final timestep finishes at the final
                     // time, or at a prescribed IO_CheckTime.
                     if (m_time + m_timestep > m_fintime && m_fintime > 0.0)
                     {
                         m_timestep = m_fintime - m_time;
                     }
                     else if (m_checktime && 
                              m_time + m_timestep - lastCheckTime >= m_checktime)
                     {
                         lastCheckTime += m_checktime;
                         m_timestep     = lastCheckTime - m_time;
                         doCheckTime    = true;
                     }
                 }
                 
                 // Perform any solver-specific pre-integration steps
                 timer.Start();
                 if (v_PreIntegrate(step))
                 {
                     break;
                 }
 
                 fields = m_intScheme->TimeIntegrate(
                     stepCounter, m_timestep, m_intSoln, m_ode);
                 timer.Stop();
 
                 m_time  += m_timestep;
                 elapsed  = timer.TimePerTest(1);
                 intTime += elapsed;
                 cpuTime += elapsed;
         
                 // Write out status information
                 if (m_session->GetComm()->GetRank() == 0 && 
                     !((step+1) % m_infosteps))
                 {
                     cout << "Steps: " << setw(8)  << left << step+1 << " "
                          << "Time: "  << setw(12) << left << m_time;
 
                     if (m_cflSafetyFactor)
                     {
                         cout << " Time-step: " << setw(12)
                              << left << m_timestep;
                     }
 
                     stringstream ss;
                     ss << cpuTime << "s";
                     cout << " CPU Time: " << setw(8) << left
                          << ss.str() << endl;
                     cpuTime = 0.0;
                 }
 
                 // Transform data into coefficient space
                 for (i = 0; i < nvariables; ++i)
                 {
                     m_fields[m_intVariables[i]]->SetPhys(fields[i]);
                     if( v_RequireFwdTrans() )
                     {
                         m_fields[m_intVariables[i]]->FwdTrans_IterPerExp(
                             fields[i],
                             m_fields[m_intVariables[i]]->UpdateCoeffs());
                     }
                     m_fields[m_intVariables[i]]->SetPhysState(false);
                 }
 
                 // Perform any solver-specific post-integration steps
                 if (v_PostIntegrate(step))
                 {
                     break;
                 }
 
                 // search for NaN and quit if found
                 if (m_nanSteps && !((step+1) % m_nanSteps) )
                 {
                     int nanFound = 0;
                     for (i = 0; i < nvariables; ++i)
                     {
                         if (Vmath::Nnan(fields[i].num_elements(),
                                 fields[i], 1) > 0)
                         {
                             nanFound = 1;
                         }
                     }
                     m_session->GetComm()->AllReduce(nanFound,
                                 LibUtilities::ReduceMax);
                     ASSERTL0 (!nanFound,
                                 "NaN found during time integration.");
                 }
                 // Update filters
                 std::vector<FilterSharedPtr>::iterator x;
                 for (x = m_filters.begin(); x != m_filters.end(); ++x)
                 {
                     (*x)->Update(m_fields, m_time);
                 }
 
                 // Write out checkpoint files
                 if ((m_checksteps && !((step + 1) % m_checksteps)) ||
                      doCheckTime)
                 {
                     if(m_HomogeneousType != eNotHomogeneous)
                     {
                         vector<bool> transformed(nfields, false);
                         for(i = 0; i < nfields; i++)
                         {
                             if (m_fields[i]->GetWaveSpace())
                             {
                                 m_fields[i]->SetWaveSpace(false);
                                 m_fields[i]->BwdTrans(m_fields[i]->GetCoeffs(),
                                                       m_fields[i]->UpdatePhys());
                                 m_fields[i]->SetPhysState(true);
                                 transformed[i] = true;
                             }
                         }
                         Checkpoint_Output(m_nchk);
                         m_nchk++;
                         for(i = 0; i < nfields; i++)
                         {
                             if (transformed[i])
                             {
                                 m_fields[i]->SetWaveSpace(true);
                                 m_fields[i]->HomogeneousFwdTrans(
                                     m_fields[i]->GetPhys(),
                                     m_fields[i]->UpdatePhys());
                                 m_fields[i]->SetPhysState(false);
                             }
                         }
                     }
                     else
                     {
                         Checkpoint_Output(m_nchk);
                         m_nchk++;
                     }
                     doCheckTime = false;
                 }
 
                 // Step advance
                 ++step;
                 ++stepCounter;
             }
             
             // Print out summary statistics
             if (m_session->GetComm()->GetRank() == 0)
             {
                 if (m_cflSafetyFactor > 0.0)
                 {
                     cout << "CFL safety factor : " << m_cflSafetyFactor << endl
                          << "CFL time-step     : " << m_timestep        << endl;
                 }
 
                 if (m_session->GetSolverInfo("Driver") != "SteadyState")
                 {
                     cout << "Time-integration  : " << intTime  << "s"   << endl;
                 }
             }
             
             // If homogeneous, transform back into physical space if necessary.
             if(m_HomogeneousType != eNotHomogeneous)
             {
                 for(i = 0; i < nfields; i++)
                 {
                     if (m_fields[i]->GetWaveSpace())
                     {
                         m_fields[i]->SetWaveSpace(false);
                         m_fields[i]->BwdTrans(m_fields[i]->GetCoeffs(),
                                               m_fields[i]->UpdatePhys());
                         m_fields[i]->SetPhysState(true);
                     }
                 }
             }
             else
             {
                 for(i = 0; i < nvariables; ++i)
                 {
                     m_fields[m_intVariables[i]]->SetPhys(fields[i]);
                     m_fields[m_intVariables[i]]->SetPhysState(true);
                 }
             }
 
             // Finalise filters
             for (x = m_filters.begin(); x != m_filters.end(); ++x)
             {
                 (*x)->Finalise(m_fields, m_time);
             }
             
             // Print for 1D problems
             if(m_spacedim == 1)
             {
                 v_AppendOutput1D(fields);   
             }
         }

void Nektar::SolverUtils::UnsteadySystem::v_GenerateSummary ( SummaryList & s )

protectedvirtual

Print a summary of time stepping parameters.

Prints a summary with some information regards the time-stepping.

Reimplemented from Nektar::SolverUtils::EquationSystem.

Reimplemented in Nektar::CoupledLinearNS, Nektar::UnsteadyViscousBurgers, Nektar::UnsteadyAdvectionDiffusion, Nektar::VelocityCorrectionScheme, Nektar::CFLtester, Nektar::UnsteadyAdvection, Nektar::NonlinearPeregrine, Nektar::PulseWavePropagation, Nektar::Monodomain, Nektar::Bidomain, Nektar::BidomainRoth, Nektar::ShallowWaterSystem, Nektar::LinearSWE, Nektar::NonlinearSWE, Nektar::ImageWarpingSystem, Nektar::UnsteadyDiffusion, Nektar::VCSWeakPressure, Nektar::IsentropicVortex, and Nektar::RinglebFlow.

Definition at line 472 of file UnsteadySystem.cpp.

References Nektar::SolverUtils::AddSummaryItem(), Nektar::SolverUtils::EquationSystem::m_checksteps, m_explicitAdvection, m_explicitDiffusion, m_explicitReaction, m_intScheme, Nektar::SolverUtils::EquationSystem::m_session, Nektar::SolverUtils::EquationSystem::m_steps, Nektar::SolverUtils::EquationSystem::m_timestep, Nektar::LibUtilities::TimeIntegrationMethodMap, and Nektar::SolverUtils::EquationSystem::v_GenerateSummary().

         {
             EquationSystem::v_GenerateSummary(s);
             AddSummaryItem(s, "Advection",
                            m_explicitAdvection ? "explicit" : "implicit");
 
             if(m_session->DefinesSolverInfo("AdvectionType"))
             {
                 AddSummaryItem(s, "AdvectionType",
                                m_session->GetSolverInfo("AdvectionType"));
             }
 
             AddSummaryItem(s, "Diffusion",
                            m_explicitDiffusion ? "explicit" : "implicit");
 
             if (m_session->GetSolverInfo("EQTYPE")
                     == "SteadyAdvectionDiffusionReaction")
             {
                 AddSummaryItem(s, "Reaction",
                                m_explicitReaction  ? "explicit" : "implicit");
             }
 
             AddSummaryItem(s, "Time Step", m_timestep);
             AddSummaryItem(s, "No. of Steps", m_steps);
             AddSummaryItem(s, "Checkpoints (steps)", m_checksteps);
             AddSummaryItem(s, "Integration Type",
                            LibUtilities::TimeIntegrationMethodMap[
                                m_intScheme->GetIntegrationMethod()]);
         }

NekDouble Nektar::SolverUtils::UnsteadySystem::v_GetTimeStep ( const Array< OneD, const Array< OneD, NekDouble > > & inarray )

protectedvirtual

Return the timestep to be used for the next step in the time-marching loop.

See also: UnsteadySystem::GetTimeStep

Reimplemented in Nektar::CompressibleFlowSystem.

Definition at line 931 of file UnsteadySystem.cpp.

References ASSERTL0.

Referenced by GetTimeStep().

         {
             ASSERTL0(false, "Not defined for this class");
             return 0.0;
         }

void Nektar::SolverUtils::UnsteadySystem::v_InitObject ( )

protectedvirtual

Init object for UnsteadySystem class.

Initialization object for UnsteadySystem class.

Reimplemented from Nektar::SolverUtils::EquationSystem.

Reimplemented in Nektar::CoupledLinearNS, Nektar::IncNavierStokes, Nektar::PulseWaveSystem, Nektar::UnsteadyViscousBurgers, Nektar::UnsteadyAdvectionDiffusion, Nektar::CFLtester, Nektar::CompressibleFlowSystem, Nektar::UnsteadyAdvection, Nektar::UnsteadyInviscidBurger, Nektar::APE, Nektar::ShallowWaterSystem, Nektar::NonlinearPeregrine, Nektar::PulseWavePropagation, Nektar::ImageWarpingSystem, Nektar::UnsteadyDiffusion, Nektar::Monodomain, Nektar::Bidomain, Nektar::BidomainRoth, Nektar::VCSMapping, Nektar::LinearSWE, Nektar::NonlinearSWE, Nektar::PulseWaveSystemOutput, Nektar::NavierStokesCFE, Nektar::VelocityCorrectionScheme, and Nektar::SolverUtils::AdvectionSystem.

Definition at line 78 of file UnsteadySystem.cpp.

References Nektar::SolverUtils::GetFilterFactory(), Nektar::LibUtilities::GetTimeIntegrationWrapperFactory(), m_cflSafetyFactor, m_explicitAdvection, m_explicitDiffusion, m_explicitReaction, Nektar::SolverUtils::EquationSystem::m_fieldMetaDataMap, m_filters, m_homoInitialFwd, m_infosteps, Nektar::SolverUtils::EquationSystem::m_initialStep, m_intScheme, m_nanSteps, Nektar::SolverUtils::EquationSystem::m_session, Nektar::SolverUtils::EquationSystem::m_time, and Nektar::SolverUtils::EquationSystem::v_InitObject().

Referenced by Nektar::SolverUtils::AdvectionSystem::v_InitObject(), Nektar::BidomainRoth::v_InitObject(), Nektar::Bidomain::v_InitObject(), Nektar::Monodomain::v_InitObject(), Nektar::UnsteadyDiffusion::v_InitObject(), Nektar::ImageWarpingSystem::v_InitObject(), Nektar::ShallowWaterSystem::v_InitObject(), Nektar::APE::v_InitObject(), Nektar::CompressibleFlowSystem::v_InitObject(), Nektar::CFLtester::v_InitObject(), and Nektar::PulseWaveSystem::v_InitObject().

         {
             EquationSystem::v_InitObject();
             
             m_initialStep = 0;
 
             // Load SolverInfo parameters
             m_session->MatchSolverInfo("DIFFUSIONADVANCEMENT","Explicit",
                                        m_explicitDiffusion,true);
             m_session->MatchSolverInfo("ADVECTIONADVANCEMENT","Explicit",
                                        m_explicitAdvection,true);
             m_session->MatchSolverInfo("REACTIONADVANCEMENT", "Explicit",
                                        m_explicitReaction, true);
 
             m_session->LoadParameter("CheckNanSteps", m_nanSteps, 1);
 
             // For steady problems, we do not initialise the time integration
             if (m_session->DefinesSolverInfo("TIMEINTEGRATIONMETHOD"))
             {
                 m_intScheme = LibUtilities::GetTimeIntegrationWrapperFactory().
                     CreateInstance(m_session->GetSolverInfo(
                                        "TIMEINTEGRATIONMETHOD"));
 
                 // Load generic input parameters
                 m_session->LoadParameter("IO_InfoSteps", m_infosteps, 0);
                 m_session->LoadParameter("CFL", m_cflSafetyFactor, 0.0);
 
                 // Set up time to be dumped in field information
                 m_fieldMetaDataMap["Time"] =
                         boost::lexical_cast<std::string>(m_time);
             }
 
             // By default attempt to forward transform initial condition.
             m_homoInitialFwd = true;
 
             // Set up filters
             LibUtilities::FilterMap::const_iterator x;
             LibUtilities::FilterMap f = m_session->GetFilters();
             for (x = f.begin(); x != f.end(); ++x)
             {
                 m_filters.push_back(GetFilterFactory().CreateInstance(
                                                                 x->first, 
                                                                 m_session, 
                                                                 x->second));
             }
         }

void Nektar::SolverUtils::UnsteadySystem::v_NumericalFlux	(	Array< OneD, Array< OneD, NekDouble > > &	physfield,
		Array< OneD, Array< OneD, NekDouble > > &	numflux
	)

protectedvirtual

Reimplemented from Nektar::SolverUtils::EquationSystem.

Reimplemented in Nektar::IncNavierStokes, Nektar::CFLtester, Nektar::PulseWavePropagation, and Nektar::ImageWarpingSystem.

Definition at line 527 of file UnsteadySystem.cpp.

References ASSERTL0.

         {
             ASSERTL0(false, 
                      "This function is not implemented for this equation.");
         }

void Nektar::SolverUtils::UnsteadySystem::v_NumericalFlux	(	Array< OneD, Array< OneD, NekDouble > > &	physfield,
		Array< OneD, Array< OneD, NekDouble > > &	numfluxX,
		Array< OneD, Array< OneD, NekDouble > > &	numfluxY
	)

protectedvirtual

Reimplemented from Nektar::SolverUtils::EquationSystem.

Definition at line 535 of file UnsteadySystem.cpp.

References ASSERTL0.

         {
             ASSERTL0(false, 
                      "This function is not implemented for this equation.");
         }

void Nektar::SolverUtils::UnsteadySystem::v_NumFluxforScalar	(	const Array< OneD, Array< OneD, NekDouble > > &	ufield,
		Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &	uflux
	)

protectedvirtual

Reimplemented from Nektar::SolverUtils::EquationSystem.

Definition at line 544 of file UnsteadySystem.cpp.

References Nektar::SolverUtils::EquationSystem::GetTraceNpoints(), Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_traceNormals, Vmath::Vmul(), and WeakPenaltyforScalar().

         {
             int i, j;
             int nTraceNumPoints = GetTraceNpoints();
             int nvariables      = m_fields.num_elements();
             int nqvar           = uflux.num_elements();
 
             Array<OneD, NekDouble > Fwd     (nTraceNumPoints);
             Array<OneD, NekDouble > Bwd     (nTraceNumPoints);
             Array<OneD, NekDouble > Vn      (nTraceNumPoints, 0.0);
             Array<OneD, NekDouble > fluxtemp(nTraceNumPoints, 0.0);
 
             // Get the sign of (v \cdot n), v = an arbitrary vector
 
             // Evaulate upwind flux:
             // uflux = \hat{u} \phi \cdot u = u^{(+,-)} n
             for (j = 0; j < nqvar; ++j)
             {
                 for (i = 0; i < nvariables ; ++i)
                 {
                     // Compute Fwd and Bwd value of ufield of i direction
                     m_fields[i]->GetFwdBwdTracePhys(ufield[i], Fwd, Bwd);
 
                     // if Vn >= 0, flux = uFwd, i.e.,
                     // edge::eForward, if V*n>=0 <=> V*n_F>=0, pick uflux = uFwd
                     // edge::eBackward, if V*n>=0 <=> V*n_B<0, pick uflux = uFwd
 
                     // else if Vn < 0, flux = uBwd, i.e.,
                     // edge::eForward, if V*n<0 <=> V*n_F<0, pick uflux = uBwd
                     // edge::eBackward, if V*n<0 <=> V*n_B>=0, pick uflux = uBwd
 
                     m_fields[i]->GetTrace()->Upwind(m_traceNormals[j], 
                                                     Fwd, Bwd, fluxtemp);
 
                     // Imposing weak boundary condition with flux
                     // if Vn >= 0, uflux = uBwd at Neumann, i.e.,
                     // edge::eForward, if V*n>=0 <=> V*n_F>=0, pick uflux = uBwd
                     // edge::eBackward, if V*n>=0 <=> V*n_B<0, pick uflux = uBwd
 
                     // if Vn >= 0, uflux = uFwd at Neumann, i.e.,
                     // edge::eForward, if V*n<0 <=> V*n_F<0, pick uflux = uFwd
                     // edge::eBackward, if V*n<0 <=> V*n_B>=0, pick uflux = uFwd
 
                     if(m_fields[0]->GetBndCondExpansions().num_elements())
                     {
                         WeakPenaltyforScalar(i, ufield[i], fluxtemp);
                     }
 
                     // if Vn >= 0, flux = uFwd*(tan_{\xi}^- \cdot \vec{n}), 
                     // i.e,
                     // edge::eForward, uFwd \(\tan_{\xi}^Fwd \cdot \vec{n})
                     // edge::eBackward, uFwd \(\tan_{\xi}^Bwd \cdot \vec{n})
 
                     // else if Vn < 0, flux = uBwd*(tan_{\xi}^- \cdot \vec{n}), 
                     // i.e,
                     // edge::eForward, uBwd \(\tan_{\xi}^Fwd \cdot \vec{n})
                     // edge::eBackward, uBwd \(\tan_{\xi}^Bwd \cdot \vec{n})
 
                     Vmath::Vmul(nTraceNumPoints, 
                                 m_traceNormals[j], 1, 
                                 fluxtemp, 1, 
                                 uflux[j][i], 1);
                 }
             }
         }

void Nektar::SolverUtils::UnsteadySystem::v_NumFluxforVector	(	const Array< OneD, Array< OneD, NekDouble > > &	ufield,
		Array< OneD, Array< OneD, Array< OneD, NekDouble > > > &	qfield,
		Array< OneD, Array< OneD, NekDouble > > &	qflux
	)

protectedvirtual

Reimplemented from Nektar::SolverUtils::EquationSystem.

Definition at line 614 of file UnsteadySystem.cpp.

References Nektar::SolverUtils::EquationSystem::GetTraceNpoints(), Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_traceNormals, Vmath::Smul(), Vmath::Vadd(), Vmath::Vmul(), Vmath::Vsub(), and WeakPenaltyforVector().

         {
             int nTraceNumPoints = GetTraceNpoints();
             int nvariables = m_fields.num_elements();
             int nqvar = qfield.num_elements();
 
             NekDouble C11 = 1.0;
             Array<OneD, NekDouble > Fwd(nTraceNumPoints);
             Array<OneD, NekDouble > Bwd(nTraceNumPoints);
             Array<OneD, NekDouble > Vn (nTraceNumPoints, 0.0);
 
             Array<OneD, NekDouble > qFwd     (nTraceNumPoints);
             Array<OneD, NekDouble > qBwd     (nTraceNumPoints);
             Array<OneD, NekDouble > qfluxtemp(nTraceNumPoints, 0.0);
 
             Array<OneD, NekDouble > uterm(nTraceNumPoints);
 
             // Evaulate upwind flux:
             // qflux = \hat{q} \cdot u = q \cdot n - C_(11)*(u^+ - u^-)
             for (int i = 0; i < nvariables; ++i)
             {
                 qflux[i] = Array<OneD, NekDouble> (nTraceNumPoints, 0.0);
                 for (int j = 0; j < nqvar; ++j)
                 {
                     //  Compute Fwd and Bwd value of ufield of jth direction
                     m_fields[i]->GetFwdBwdTracePhys(qfield[j][i],qFwd,qBwd);
 
                     // if Vn >= 0, flux = uFwd, i.e.,
                     // edge::eForward, if V*n>=0 <=> V*n_F>=0, pick 
                     // qflux = qBwd = q+
                     // edge::eBackward, if V*n>=0 <=> V*n_B<0, pick 
                     // qflux = qBwd = q-
 
                     // else if Vn < 0, flux = uBwd, i.e.,
                     // edge::eForward, if V*n<0 <=> V*n_F<0, pick 
                     // qflux = qFwd = q-
                     // edge::eBackward, if V*n<0 <=> V*n_B>=0, pick 
                     // qflux = qFwd = q+
 
                     m_fields[i]->GetTrace()->Upwind(m_traceNormals[j], 
                                                     qBwd, qFwd, 
                                                     qfluxtemp);
                     
                     Vmath::Vmul(nTraceNumPoints, 
                                 m_traceNormals[j], 1, 
                                 qfluxtemp, 1, 
                                 qfluxtemp, 1);
 
                     // Generate Stability term = - C11 ( u- - u+ )
                     m_fields[i]->GetFwdBwdTracePhys(ufield[i], Fwd, Bwd);
                     
                     Vmath::Vsub(nTraceNumPoints, 
                                 Fwd, 1, Bwd, 1, 
                                 uterm, 1);
                     
                     Vmath::Smul(nTraceNumPoints, 
                                 -1.0 * C11, uterm, 1, 
                                 uterm, 1);
 
                     // Flux = {Fwd, Bwd} * (nx, ny, nz) + uterm * (nx, ny)
                     Vmath::Vadd(nTraceNumPoints, 
                                 uterm, 1, 
                                 qfluxtemp, 1, 
                                 qfluxtemp, 1);
 
                     // Imposing weak boundary condition with flux
                     if (m_fields[0]->GetBndCondExpansions().num_elements())
                     {
                         WeakPenaltyforVector(i, j, 
                                              qfield[j][i], 
                                              qfluxtemp, 
                                              C11);
                     }
 
                     // q_hat \cdot n = (q_xi \cdot n_xi) or (q_eta \cdot n_eta)
                     // n_xi = n_x * tan_xi_x + n_y * tan_xi_y + n_z * tan_xi_z
                     // n_xi = n_x * tan_eta_x + n_y * tan_eta_y + n_z*tan_eta_z
                     Vmath::Vadd(nTraceNumPoints, 
                                 qfluxtemp, 1, 
                                 qflux[i], 1, 
                                 qflux[i], 1);
                 }
             }
         }

bool Nektar::SolverUtils::UnsteadySystem::v_PostIntegrate ( int step )

protectedvirtual

Reimplemented in Nektar::IncNavierStokes, Nektar::CompressibleFlowSystem, and Nektar::APE.

Definition at line 943 of file UnsteadySystem.cpp.

Referenced by v_DoSolve(), and Nektar::APE::v_PostIntegrate().

         {
             return false;
         }

bool Nektar::SolverUtils::UnsteadySystem::v_PreIntegrate ( int step )

protectedvirtual

Reimplemented in Nektar::IncNavierStokes, Nektar::UnsteadyAdvectionDiffusion, and Nektar::APE.

Definition at line 938 of file UnsteadySystem.cpp.

Referenced by v_DoSolve(), and Nektar::APE::v_PreIntegrate().

         {
             return false;
         }

virtual SOLVER_UTILS_EXPORT bool Nektar::SolverUtils::UnsteadySystem::v_RequireFwdTrans ( )

inlineprotectedvirtual

Reimplemented in Nektar::VelocityCorrectionScheme.

Definition at line 140 of file UnsteadySystem.h.

Referenced by v_DoSolve().

             {
                 return true;
             }

bool Nektar::SolverUtils::UnsteadySystem::v_SteadyStateCheck ( int step )

protectedvirtual

Definition at line 948 of file UnsteadySystem.cpp.

         {
             return false;
         }

void Nektar::SolverUtils::UnsteadySystem::WeakPenaltyforScalar	(	const int	var,
		const Array< OneD, const NekDouble > &	physfield,
		Array< OneD, NekDouble > &	penaltyflux,
		NekDouble	time = `0.0`
	)

private

Definition at line 760 of file UnsteadySystem.cpp.

References Nektar::SpatialDomains::eDirichlet, Nektar::SpatialDomains::eNeumann, Nektar::SolverUtils::EquationSystem::GetPhys_Offset(), Nektar::SolverUtils::EquationSystem::GetTraceNpoints(), Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_session, and Vmath::Vcopy().

Referenced by v_NumFluxforScalar().

         {
             int i, e, npoints, id1, id2;
             
             // Number of boundary regions
             int nbnd = m_fields[var]->GetBndCondExpansions().num_elements();
             int Nfps, numBDEdge;
             int nTraceNumPoints = GetTraceNpoints();
             int cnt = 0;
 
             Array<OneD, NekDouble > uplus(nTraceNumPoints);
 
             m_fields[var]->ExtractTracePhys(physfield, uplus);
             for (i = 0; i < nbnd; ++i)
             {
                 // Number of boundary expansion related to that region
                 numBDEdge = m_fields[var]->
                     GetBndCondExpansions()[i]->GetExpSize();
                 
                 // Evaluate boundary values g_D or g_N from input files
                 LibUtilities::EquationSharedPtr ifunc = 
                     m_session->GetFunction("InitialConditions", 0);
                 
                 npoints = m_fields[var]->
                     GetBndCondExpansions()[i]->GetNpoints();
                 
                 Array<OneD,NekDouble> BDphysics(npoints);
                 Array<OneD,NekDouble> x0(npoints,0.0);
                 Array<OneD,NekDouble> x1(npoints,0.0);
                 Array<OneD,NekDouble> x2(npoints,0.0);
 
                 m_fields[var]->GetBndCondExpansions()[i]->GetCoords(x0,x1,x2);
                 ifunc->Evaluate(x0,x1,x2,time,BDphysics);
 
                 // Weakly impose boundary conditions by modifying flux values
                 for (e = 0; e < numBDEdge ; ++e)
                 {
                     // Number of points on the expansion
                     Nfps = m_fields[var]->
                         GetBndCondExpansions()[i]->GetExp(e)->GetNumPoints(0);
                     
                     id1 = m_fields[var]->
                         GetBndCondExpansions()[i]->GetPhys_Offset(e);
                     
                     id2 = m_fields[0]->GetTrace()->
                         GetPhys_Offset(m_fields[0]->GetTraceMap()->
                                         GetBndCondTraceToGlobalTraceMap(cnt++));
 
                     // For Dirichlet boundary condition: uflux = g_D
                     if (m_fields[var]->GetBndConditions()[i]->
                     GetBoundaryConditionType() == SpatialDomains::eDirichlet)
                     {
                         Vmath::Vcopy(Nfps, 
                                      &BDphysics[id1], 1, 
                                      &penaltyflux[id2], 1);
                     }
                     // For Neumann boundary condition: uflux = u+
                     else if ((m_fields[var]->GetBndConditions()[i])->
                     GetBoundaryConditionType() == SpatialDomains::eNeumann)
                     {
                         Vmath::Vcopy(Nfps, 
                                      &uplus[id2], 1, 
                                      &penaltyflux[id2], 1);
                     }
                 }
             }
         }

void Nektar::SolverUtils::UnsteadySystem::WeakPenaltyforVector	(	const int	var,
		const int	dir,
		const Array< OneD, const NekDouble > &	physfield,
		Array< OneD, NekDouble > &	penaltyflux,
		NekDouble	C11,
		NekDouble	time = `0.0`
	)

private

Diffusion: Imposing weak boundary condition for q with flux uflux = g_D on Dirichlet boundary condition uflux = u_Fwd on Neumann boundary condition

Definition at line 837 of file UnsteadySystem.cpp.

References Nektar::SpatialDomains::eDirichlet, Nektar::SpatialDomains::eNeumann, Nektar::SolverUtils::EquationSystem::GetPhys_Offset(), Nektar::SolverUtils::EquationSystem::GetTraceNpoints(), Nektar::SolverUtils::EquationSystem::m_fields, Nektar::SolverUtils::EquationSystem::m_session, Nektar::SolverUtils::EquationSystem::m_traceNormals, and Vmath::Vmul().

Referenced by v_NumFluxforVector().

         {
             int i, e, npoints, id1, id2;
             int nbnd = m_fields[var]->GetBndCondExpansions().num_elements();
             int numBDEdge, Nfps;
             int nTraceNumPoints = GetTraceNpoints();
             Array<OneD, NekDouble > uterm(nTraceNumPoints);
             Array<OneD, NekDouble > qtemp(nTraceNumPoints);
             int cnt = 0;
 
             m_fields[var]->ExtractTracePhys(physfield,qtemp);
 
             for (i = 0; i < nbnd; ++i)
             {
                 numBDEdge = m_fields[var]->
                     GetBndCondExpansions()[i]->GetExpSize();
                 
                 // Evaluate boundary values g_D or g_N from input files
                 LibUtilities::EquationSharedPtr ifunc = 
                     m_session->GetFunction("InitialConditions", 0);
                 
                 npoints = m_fields[var]->
                     GetBndCondExpansions()[i]->GetNpoints();
 
                 Array<OneD,NekDouble> BDphysics(npoints);
                 Array<OneD,NekDouble> x0(npoints,0.0);
                 Array<OneD,NekDouble> x1(npoints,0.0);
                 Array<OneD,NekDouble> x2(npoints,0.0);
 
                 m_fields[var]->GetBndCondExpansions()[i]->GetCoords(x0,x1,x2);
                 ifunc->Evaluate(x0,x1,x2,time,BDphysics);
 
                 // Weakly impose boundary conditions by modifying flux values
                 for (e = 0; e < numBDEdge ; ++e)
                 {
                     Nfps = m_fields[var]->
                         GetBndCondExpansions()[i]->GetExp(e)->GetNumPoints(0);
 
                     id1 = m_fields[var]->
                         GetBndCondExpansions()[i]->GetPhys_Offset(e);
                     
                     id2 = m_fields[0]->GetTrace()->
                         GetPhys_Offset(m_fields[0]->GetTraceMap()->
                                        GetBndCondTraceToGlobalTraceMap(cnt++));
 
                     // For Dirichlet boundary condition: 
                     //qflux = q+ - C_11 (u+ -    g_D) (nx, ny)
                     if(m_fields[var]->GetBndConditions()[i]->
                     GetBoundaryConditionType() == SpatialDomains::eDirichlet)
                     {
                         Vmath::Vmul(Nfps, 
                                     &m_traceNormals[dir][id2], 1, 
                                     &qtemp[id2], 1, 
                                     &penaltyflux[id2], 1);
                     }
                     // For Neumann boundary condition: qflux = g_N
                     else if((m_fields[var]->GetBndConditions()[i])->
                     GetBoundaryConditionType() == SpatialDomains::eNeumann)
                     {
                         Vmath::Vmul(Nfps,
                                     &m_traceNormals[dir][id2], 1, 
                                     &BDphysics[id1], 1, 
                                     &penaltyflux[id2], 1);
                     }
                 }
             }
         }